mRNA_S-ischiensis_contig91.20897.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig91.20897.1
Unique NamemRNA_S-ischiensis_contig91.20897.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig91.20897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig91contigS-ischiensis_contig91:124529..125148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size620
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig91.20897.1prot_S-ischiensis_contig91.20897.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig91 124762..125112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.553801-UTR-S-ischiensis_contig91:124528..1247611622817412.553801-UTR-S-ischiensis_contig91:124528..124761Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 124529..124761 +
1695741095.7364733-UTR-S-ischiensis_contig91:124528..1247611695741095.7364733-UTR-S-ischiensis_contig91:124528..124761Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 124529..124761 +
1622817412.5792654-UTR-S-ischiensis_contig91:125112..1251481622817412.5792654-UTR-S-ischiensis_contig91:125112..125148Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 125113..125148 +
1695741095.7636797-UTR-S-ischiensis_contig91:125112..1251481695741095.7636797-UTR-S-ischiensis_contig91:125112..125148Schizocladia ischiensis KU_0333UTRS-ischiensis_contig91 125113..125148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817412.56708-CDS-S-ischiensis_contig91:124761..1251121622817412.56708-CDS-S-ischiensis_contig91:124761..125112Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 124762..125112 +
1695741095.7496858-CDS-S-ischiensis_contig91:124761..1251121695741095.7496858-CDS-S-ischiensis_contig91:124761..125112Schizocladia ischiensis KU_0333CDSS-ischiensis_contig91 124762..125112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig91.20897.1

>prot_S-ischiensis_contig91.20897.1 ID=prot_S-ischiensis_contig91.20897.1|Name=mRNA_S-ischiensis_contig91.20897.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
MVGQGCSAAGPLDDKRTGGAAAMAWPYRTLGLALQDFFSLSETLASTSMC
LLEGVIASRDRYSRYSFHMSIIYTYMYSRGACRSPAAIDHCPLPSNLQSP
PPPPPPLPQPPPPQPP*
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mRNA from alignment at S-ischiensis_contig91:124529..125148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig91.20897.1 ID=mRNA_S-ischiensis_contig91.20897.1|Name=mRNA_S-ischiensis_contig91.20897.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=620bp|location=Sequence derived from alignment at S-ischiensis_contig91:124529..125148+ (Schizocladia ischiensis KU_0333)
GTAGCTTATGCGCTCTGCAGCAGTTCTTGCGACATAACCTTGCGTATAGC
CTAGCATAATCCTTGAGTGCAAACTGCCGTAAATTGCACCCATGGGGTTG
CCAGTTGCCGATTGGCTGGCGCACAAGCGGCATATTCCACACGGGATCGC
AGAGCTCTACATAGGACTCAGCGCCAAATGCCCTCAGGCTATTTACTCAT
GTGACGGCTACATCAATCCGGGACTTATGGACCATGGTGGGACAAGGCTG
TAGTGCTGCTGGCCCCCTCGATGATAAGAGAACCGGAGGTGCCGCGGCGA
TGGCATGGCCCTATCGTACCCTGGGCTTAGCATTACAGGACTTTTTTTCG
CTCAGCGAAACACTTGCAAGTACTAGCATGTGCTTGCTTGAGGGTGTGAT
TGCATCAAGAGATAGATACAGTAGATATTCCTTTCACATGTCCATTATAT
ATACGTATATGTACTCACGTGGTGCTTGCCGTAGTCCCGCGGCCATTGAC
CACTGTCCATTGCCTAGCAATCTGCAGTCACCACCACCACCGCCGCCGCC
TCTGCCACAACCGCCGCCGCCGCAACCGCCATGAAAACCACGAATCCATT
GCTTTTTTTGCTTGGCAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig91:124529..125148+

>mRNA_S-ischiensis_contig91.20897.1 ID=mRNA_S-ischiensis_contig91.20897.1|Name=mRNA_S-ischiensis_contig91.20897.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig91:124529..125148+ (Schizocladia ischiensis KU_0333)
ATGGTGGGACAAGGCTGTAGTGCTGCTGGCCCCCTCGATGATAAGAGAAC
CGGAGGTGCCGCGGCGATGGCATGGCCCTATCGTACCCTGGGCTTAGCAT
TACAGGACTTTTTTTCGCTCAGCGAAACACTTGCAAGTACTAGCATGTGC
TTGCTTGAGGGTGTGATTGCATCAAGAGATAGATACAGTAGATATTCCTT
TCACATGTCCATTATATATACGTATATGTACTCACGTGGTGCTTGCCGTA
GTCCCGCGGCCATTGACCACTGTCCATTGCCTAGCAATCTGCAGTCACCA
CCACCACCGCCGCCGCCTCTGCCACAACCGCCGCCGCCGCAACCGCCATG
AATGGTGGGACAAGGCTGTAGTGCTGCTGGCCCCCTCGATGATAAGAGAA
CCGGAGGTGCCGCGGCGATGGCATGGCCCTATCGTACCCTGGGCTTAGCA
TTACAGGACTTTTTTTCGCTCAGCGAAACACTTGCAAGTACTAGCATGTG
CTTGCTTGAGGGTGTGATTGCATCAAGAGATAGATACAGTAGATATTCCT
TTCACATGTCCATTATATATACGTATATGTACTCACGTGGTGCTTGCCGT
AGTCCCGCGGCCATTGACCACTGTCCATTGCCTAGCAATCTGCAGTCACC
ACCACCACCGCCGCCGCCTCTGCCACAACCGCCGCCGCCGCAACCGCCAT
GA
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