mRNA_S-ischiensis_contig11.2215.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: E0VFA3_PEDHC (RBR-type E3 ubiquitin transferase n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VFA3_PEDHC) HSP 1 Score: 88.6 bits (218), Expect = 1.710e-16 Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = -3
Query: 7 REQQDSEVEALAAVFFEEEEFIAESFLDPSDDRQPRHRFRISCKPVQE---DLTLNPGG-----FRVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 387
R Q E+++L ++++ EE + ++ + + Q + F CK +E L PG +V+HLPPI LR +FP YP K PP F +SC WL + ++S+LC+ LD +W + +VY+WC+ L+ L
Sbjct: 3 RSSQLDEIDSLQSIYYAEEFQVTDT---SNQNEQIQAIFWAFCKLPEEYAIKFLLVPGSHEPSYLKVKHLPPIELRLTFPKDYPSKNPPIFVISCKWLPKSKISLLCKKLDELWSEYGPVEIVYIWCDFLKNDAL 134
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: UPI001E671457 (E3 ubiquitin-protein ligase RNF14-like isoform X1 n=3 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E671457) HSP 1 Score: 87.4 bits (215), Expect = 4.280e-16 Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = -3
Query: 7 EQQDSEVEALAAVFFEEEEFIAESFLDPSDD----RQPRHRFRISCKPVQEDLTLNPG--------GFRVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 384
E+QD E+ ALA+++ E + + P + R + P LT + G + V HLP IYL +FPA YP K PP+FTLSC WL+R QL+ LC+ LDR+W +G V++ W + L++ L
Sbjct: 29 EEQDDELLALASIYEESFTSVQDQETGPMETQDFIRGGELAIHLELPPDFTLLTRHTGENGEVQEQSYVVEHLPAIYLHFTFPATYPSKHPPSFTLSCKWLNRAQLTQLCQQLDRLWAENKGCVVMFTWAQFLKDESL 166
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A8J4Y237_CHIOP (RBR-type E3 ubiquitin transferase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4Y237_CHIOP) HSP 1 Score: 85.1 bits (209), Expect = 2.610e-15 Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = -3
Query: 16 RVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLRE 216
+V HLPPI L +FPA YP + PP FTLSC WL R QLSVLC+ LD +WE G + Y W + L+E
Sbjct: 74 QVEHLPPINLHFTFPAAYPSQHPPGFTLSCKWLSRAQLSVLCQKLDSLWEENEGCVITYTWAQFLKE 140
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A2P2I4I4_9CRUS (RBR-type E3 ubiquitin transferase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I4I4_9CRUS) HSP 1 Score: 82.4 bits (202), Expect = 2.270e-14 Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = -3
Query: 7 EQQDSEVEALAAVFFEEEEFIAESFLDPSDDRQPRHRFRISCKPVQEDLTLNPGGFR-----VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 384
E QD E+ L++++ EEF S + D++ + + + +TL R V++LPPIYL +P+ YP PP +TL+C W+ R QLS++C+ LDR+WE +G ++Y W + ++E CL
Sbjct: 4 EAQDDELLVLSSIY---EEFFHRSTAE-GDNKGGELMIHLD---LTDSITLTAVNGRGRQEQVQYLPPIYLHFWYPSDYPSAAPPVYTLTCKWITRPQLSLVCQELDRLWEENKGDVILYTWSQYIKEECL 127
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A6J8BE21_MYTCO (RBR-type E3 ubiquitin transferase n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8BE21_MYTCO) HSP 1 Score: 80.5 bits (197), Expect = 8.670e-14 Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = -3
Query: 16 EQQDSEVEALAAVFFEEEEFIAESFLDPSDD-RQPRHRFRISCKPVQEDLTLNPGG-------FRVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLRE 384
EQQ+ E+ AL +++ E+ L SDD +P +F +S + E+ ++ V+HLPPI L P YP PP FTLSC WL+R+QLS LC+ LD IWE + VV++W L++
Sbjct: 5 EQQEDELLALTSIY-------DETVLSVSDDTEEPGGQFLVSSH-IPENFSIKSLSKDNKTEEHVVKHLPPIALNFQLPKDYPSVNPPQFTLSCKWLNRKQLSKLCQRLDEIWEENKPCVVVFLWTSFLQD 127
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A8B8D7N6_CRAVI (RBR-type E3 ubiquitin transferase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D7N6_CRAVI) HSP 1 Score: 79.3 bits (194), Expect = 2.160e-13 Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -3
Query: 22 REQQDSEVEALAAVFFEEEEFIAESFLDP----SDDRQPRHRFRISCKPVQEDLTLNPGGFR-VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELL 387
+EQQD E+ AL+++F E I + D S + F ++ + + P + ++HLPP+ L P YP + PP FTLSC WL+R+QLS+LC LD +WE +G +++ W L
Sbjct: 5 KEQQDDELLALSSIFDETVISIVQDSNDCGGQFSANLHLPENFMLAVITDSTNDEIKPEEYHNLKHLPPLVLDFQLPPNYPSESPPKFTLSCKWLNRKQLSLLCEKLDELWEEDKGSVILFTWTNFL 131
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: UPI00112C1C9F (E3 ubiquitin-protein ligase RNF14 isoform X1 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112C1C9F) HSP 1 Score: 79.3 bits (194), Expect = 2.270e-13 Identity = 50/130 (38.46%), Postives = 69/130 (53.08%), Query Frame = -3
Query: 16 REQQDSEVEALAAVFFEEEEFIAESF----LDPSDDRQPRHRFRISCKPVQEDLTLNPGGFR--VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLRE 387
RE Q+ E+ ALA+++ E+E AE+ + + P R +S LN F V LPP+ L PA YP PPAFTLSC WL R QL+ LC+ LD +W+ RG V++ W + L+E
Sbjct: 6 REAQEDELLALASIYPEDEFKRAETAQGGEIRVCLELPPNFRIFVSGNAA---TNLNNDDFEDSVCFLPPVVLNFELPADYPSASPPAFTLSCKWLSRIQLTALCKQLDNLWDENRGCVVLFAWMQFLKE 132
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A5N5T8F4_9CRUS (RBR-type E3 ubiquitin transferase n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5T8F4_9CRUS) HSP 1 Score: 79.0 bits (193), Expect = 3.200e-13 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = -3
Query: 7 VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 213
+RHLPP++L +FP YP ++PP +TLSC W++R QLS LC+ LD +WE G V++ W + L++ L
Sbjct: 69 IRHLPPLHLYFTFPHNYPSEDPPEYTLSCKWINRSQLSYLCKRLDALWEENVGNEVMFTWAQCLKDETL 137
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: K1R3Z9_CRAGI (RBR-type E3 ubiquitin transferase n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1R3Z9_CRAGI) HSP 1 Score: 78.6 bits (192), Expect = 4.530e-13 Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = -3
Query: 22 REQQDSEVEALAAVFFEEEEFIAESFLDPSDDRQPR----HRFRISCKPVQEDLTLNPGGFR-VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELL 387
+EQQ+ E+ AL++++ + + + D R F+++ + D + P F ++HLPP+ L P YP PP FTLSC WL+R+QLS+LC LD +WE +G +++ W L
Sbjct: 81 KEQQEDELLALSSIYDDTVISLVQDDNDCGGQFSARLHFPENFQLAVITDKTDDEIKPEEFHTLKHLPPLILDFQLPPDYPSDNPPQFTLSCKWLNRKQLSLLCAKLDELWEEDKGSVILFTWTNFL 207
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A210QAL9_MIZYE (RBR-type E3 ubiquitin transferase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QAL9_MIZYE) HSP 1 Score: 77.4 bits (189), Expect = 1.010e-12 Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = -3
Query: 4 VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCLQ 213
V+ LPP+ L PA YP PP FTLSC WL+R+QL+ LC LD IWE +G +++MW L E ++
Sbjct: 70 VKFLPPVILNFQLPADYPSCSPPQFTLSCKWLNRKQLTALCHKLDEIWEENKGNEILFMWTSFLAEETME 139 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2215.1 >prot_S-ischiensis_contig11.2215.1 ID=prot_S-ischiensis_contig11.2215.1|Name=mRNA_S-ischiensis_contig11.2215.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp FLETPLPQQLAPHVHHAPPPKRLPDSVQSSTEDRELPAVQPPTREGERRGback to top mRNA from alignment at S-ischiensis_contig11:2046422..2047155+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2215.1 ID=mRNA_S-ischiensis_contig11.2215.1|Name=mRNA_S-ischiensis_contig11.2215.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=734bp|location=Sequence derived from alignment at S-ischiensis_contig11:2046422..2047155+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:2046422..2047155+ >mRNA_S-ischiensis_contig11.2215.1 ID=mRNA_S-ischiensis_contig11.2215.1|Name=mRNA_S-ischiensis_contig11.2215.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1146bp|location=Sequence derived from alignment at S-ischiensis_contig11:2046422..2047155+ (Schizocladia ischiensis KU_0333)back to top |