mRNA_S-ischiensis_contig90.20851.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20851.1
Unique NamemRNA_S-ischiensis_contig90.20851.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: A0A7C1VJE0_9BACT (HNH endonuclease n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1VJE0_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 5.210e-12
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    7 ERLVLDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVFKAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQKTYW 267
            E L  DH D +K NN  +NL  V+H+ N R R   N   TSG  GV    GKWRATI ++GK +HLGYF +KR A +   +  ++ W
Sbjct:   64 EGLETDHIDGDKLNNLRENLRSVTHSQNCRNRKFVN---TSGYRGVSWHQGKWRATITINGKHKHLGYFDNKRLAYEKYCETLESVW 147          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: A0A3B9N2H4_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3B9N2H4_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 3.440e-8
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   13 LVLDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVFKAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQKTY 264
            LV++HKD NK NNNA+NLE V++  N   +   +S+   GV G  K   KW++ I ++GK  HLGYF       K  L+A   Y
Sbjct:   85 LVVNHKDFNKLNNNAENLEIVTNRENCNLKHIKSSSEYVGV-GFHKLTNKWQSRIYINGKREHLGYF-------KTELEAHNVY 160          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: UPI0011173C8F (HNH endonuclease n=1 Tax=Aeromonas veronii TaxID=654 RepID=UPI0011173C8F)

HSP 1 Score: 56.6 bits (135), Expect = 6.670e-8
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   10 RLVLDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVFKAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDA 252
            + V+DH +  + +N  +NL  V+   N +  A H S    G    +KAAGKWR+ I VDGK+ HLG F  ++ A +A L A
Sbjct:   78 KFVIDHINGRRYDNRPENLRVVTARQNQQNHASHRSGRLVGTT-FYKAAGKWRSQIKVDGKIVHLGLFDTEQIAHEAYLAA 157          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: A0A258MS26_9BACT (AP2/ERF domain-containing protein n=1 Tax=Sphingobacteriia bacterium 35-40-8 TaxID=1970576 RepID=A0A258MS26_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.070e-7
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   13 LVLDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGV--FKAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQKTY 264
            L +DH++ +  +N   NL   +   N+R R   N+ +TSGV GV   K  GKW A I +DGK RHLGYFL+   A  A   A   +
Sbjct:   82 LQVDHRNGDGLDNQRVNLRLATRAQNNRNRR-MNATSTSGVKGVRWHKRRGKWFAAITLDGKQRHLGYFLNTAEAAAAYAAASAQF 166          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: A0A1W6DXL7_9CAUD (Uncharacterized protein n=1 Tax=Citrobacter phage CF1 DK-2017 TaxID=2267237 RepID=A0A1W6DXL7_9CAUD)

HSP 1 Score: 53.5 bits (127), Expect = 9.790e-7
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   19 LDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVF--KAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQKTY 264
            +DH ++++ +N  +NL  VS + N R +    S  +SG  GV+  KAAG+W A++ VDGK R+LG F     A +AR+ A K Y
Sbjct:   74 IDHINHDRTDNIIENLRLVSRSDNLRNKGKVLS--SSGEMGVYWSKAAGRWEASLTVDGKKRYLGLFDTVEQAREARVKADKIY 155          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: A0A291AXK3_9CAUD (HNH homing endonuclease n=1 Tax=Shigella phage Sf12 TaxID=2024315 RepID=A0A291AXK3_9CAUD)

HSP 1 Score: 51.2 bits (121), Expect = 8.300e-6
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   13 LVLDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVF--KAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQK 258
            + +DH ++ + +N  +NL  VS   N + ++  N +NTSGV GV   K   K+RA I ++GK +H+GYF+D ++A  AR   +K
Sbjct:   78 MEIDHINHIRDDNRIENLRLVSKQDNLKNQSKRN-DNTSGVTGVSWNKREQKFRAYININGKEKHIGYFVDLKSAVLARKSLEK 160          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: UPI001CD623A2 (HNH endonuclease n=1 Tax=Salipiger bermudensis TaxID=344736 RepID=UPI001CD623A2)

HSP 1 Score: 50.4 bits (119), Expect = 2.070e-5
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   19 LDHKDNNKANNNADNLEFVSHTAN--SRKRAGHNSNNTSGVNGVF--KAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQKTY 264
            +DH + N+ +N   NL  VS+  N  + KR    +NNTSG  GVF     G+W A I   G+ RHLG F++K  A KAR  A++ +
Sbjct:  104 IDHINGNRTDNALANLRLVSNIENHMNTKRP---TNNTSGCVGVFLEPRTGRWVAQIYAQGRRRHLGTFIEKEEAIKARNLAERAH 186          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: UPI001C95C2DD (HNH endonuclease n=2 Tax=Burkholderia TaxID=32008 RepID=UPI001C95C2DD)

HSP 1 Score: 49.3 bits (116), Expect = 3.740e-5
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   19 LDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVFKAAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQKTY 264
            +DH + ++ +N   NL  V H  N +      + + +G+ GV K  GK+RA I +DGK +HLG F     A  A + A++ Y
Sbjct:   74 IDHINGDRTDNRLANLRDVPHAENMQNMRKPKAYSATGLLGVAKFRGKFRAEIRIDGKKKHLGVFDTAEEAHAAYMSAKRAY 155          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: UPI00138EE8D0 (HNH endonuclease n=1 Tax=Methylobacterium sp. Leaf117 TaxID=1736260 RepID=UPI00138EE8D0)

HSP 1 Score: 49.3 bits (116), Expect = 3.940e-5
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   19 LDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVFKAAGK--WRATIPVDGKLRHLGYFLDKRAAEKARLDAQ 255
            +DH +N++++N   NL   + + N         NNTSGV GV++ AG+  W A +  +G  RHLG F  K AAE A L A+
Sbjct:   75 VDHINNDRSDNRWSNLRRATSSQNCCNTY-RMKNNTSGVKGVYRPAGRKNWTARLSFEGTTRHLGCFPTKEAAEAAVLSAR 154          
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Match: A0A1Q7UWM7_9BACT (AP2/ERF domain-containing protein n=1 Tax=Acidobacteria bacterium 13_1_20CM_4_56_7 TaxID=1803434 RepID=A0A1Q7UWM7_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 4.220e-5
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 LVLDHKDNNKANNNADNLEFVSHTANSRKR-AGHNSNNTSGVNGVFKAAGKWRATIPVDGKLRHLGYFLDKRAAEK 237
            + +DH D N  NN   NL   +   N + R    +S+   GV+  +K+ GKW A+I V+GK RHLGYF D+  A K
Sbjct:   10 IGVDHVDGNPLNNQRANLRQANRYQNGQNRKVQKHSSRFKGVS-FWKSVGKWVASINVNGKKRHLGYFKDETDAAK 84          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7C1VJE0_9BACT5.210e-1244.83HNH endonuclease n=1 Tax=bacterium TaxID=1869227 R... [more]
A0A3B9N2H4_9BACT3.440e-841.67Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
UPI0011173C8F6.670e-839.51HNH endonuclease n=1 Tax=Aeromonas veronii TaxID=6... [more]
A0A258MS26_9BACT2.070e-740.70AP2/ERF domain-containing protein n=1 Tax=Sphingob... [more]
A0A1W6DXL7_9CAUD9.790e-740.48Uncharacterized protein n=1 Tax=Citrobacter phage ... [more]
A0A291AXK3_9CAUD8.300e-638.10HNH homing endonuclease n=1 Tax=Shigella phage Sf1... [more]
UPI001CD623A22.070e-540.70HNH endonuclease n=1 Tax=Salipiger bermudensis Tax... [more]
UPI001C95C2DD3.740e-534.15HNH endonuclease n=2 Tax=Burkholderia TaxID=32008 ... [more]
UPI00138EE8D03.940e-539.51HNH endonuclease n=1 Tax=Methylobacterium sp. Leaf... [more]
A0A1Q7UWM7_9BACT4.220e-540.79AP2/ERF domain-containing protein n=1 Tax=Acidobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:106411..106680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score60.1
Seed ortholog evalue6.2e-07
Seed eggNOG ortholog1526550.A0A088F6U4_9VIRU
EggNOG free text desc.HNH endonuclease
EggNOG OGs4QAIU@10239
COG Functional cat.S
Best tax levelViruses
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817408.6874235-CDS-S-ischiensis_contig90:106410..1066801622817408.6874235-CDS-S-ischiensis_contig90:106410..106680Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 106411..106680 +
1695741092.702733-CDS-S-ischiensis_contig90:106410..1066801695741092.702733-CDS-S-ischiensis_contig90:106410..106680Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 106411..106680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20851.1prot_S-ischiensis_contig90.20851.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 106411..106680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20851.1

>prot_S-ischiensis_contig90.20851.1 ID=prot_S-ischiensis_contig90.20851.1|Name=mRNA_S-ischiensis_contig90.20851.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
MAERLVLDHKDNNKANNNADNLEFVSHTANSRKRAGHNSNNTSGVNGVFK
AAGKWRATIPVDGKLRHLGYFLDKRAAEKARLDAQKTYW*
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mRNA from alignment at S-ischiensis_contig90:106411..106680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20851.1 ID=mRNA_S-ischiensis_contig90.20851.1|Name=mRNA_S-ischiensis_contig90.20851.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=270bp|location=Sequence derived from alignment at S-ischiensis_contig90:106411..106680+ (Schizocladia ischiensis KU_0333)
ATGGCGGAGCGGCTTGTCCTGGACCACAAGGACAACAACAAGGCCAACAA CAATGCCGACAACTTGGAGTTCGTGTCTCATACGGCAAACAGCCGCAAGC GCGCCGGGCACAACAGCAACAACACCAGCGGCGTCAACGGCGTGTTCAAG GCCGCGGGGAAGTGGCGTGCAACGATCCCTGTAGACGGCAAGCTCAGGCA CCTGGGCTACTTCCTGGACAAGAGGGCCGCCGAGAAAGCCCGCCTCGATG CACAGAAGACGTACTGGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:106411..106680+

>mRNA_S-ischiensis_contig90.20851.1 ID=mRNA_S-ischiensis_contig90.20851.1|Name=mRNA_S-ischiensis_contig90.20851.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig90:106411..106680+ (Schizocladia ischiensis KU_0333)
ATGGCGGAGCGGCTTGTCCTGGACCACAAGGACAACAACAAGGCCAACAA
CAATGCCGACAACTTGGAGTTCGTGTCTCATACGGCAAACAGCCGCAAGC
GCGCCGGGCACAACAGCAACAACACCAGCGGCGTCAACGGCGTGTTCAAG
GCCGCGGGGAAGTGGCGTGCAACGATCCCTGTAGACGGCAAGCTCAGGCA
CCTGGGCTACTTCCTGGACAAGAGGGCCGCCGAGAAAGCCCGCCTCGATG
CACAGAAGACGTACTGGTGAATGGCGGAGCGGCTTGTCCTGGACCACAAG
GACAACAACAAGGCCAACAACAATGCCGACAACTTGGAGTTCGTGTCTCA
TACGGCAAACAGCCGCAAGCGCGCCGGGCACAACAGCAACAACACCAGCG
GCGTCAACGGCGTGTTCAAGGCCGCGGGGAAGTGGCGTGCAACGATCCCT
GTAGACGGCAAGCTCAGGCACCTGGGCTACTTCCTGGACAAGAGGGCCGC
CGAGAAAGCCCGCCTCGATGCACAGAAGACGTACTGGTGA
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