mRNA_S-ischiensis_contig9.20812.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA) HSP 1 Score: 171 bits (432), Expect = 4.700e-47 Identity = 99/265 (37.36%), Postives = 141/265 (53.21%), Query Frame = 3
Query: 348 FPADMRTDTAVVNDGRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKG-GGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDMLDVLFTEFALNDYNSFPNRGES----YELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAW 1127
+ AD TA+ N G T+++LE+++ KC+TPG+ I +G +GGSI+ G S G+++ +LQ MCP ATV + GT+ S MC + LG +DVL EF+LNDY + NRG++ YEL +R+ L+ A PA+ + FWG F + + QE + RHYG++GIS+RD VWPY +AP+ A+ V D HHPTNA HA+ +LALY A+RFL W
Sbjct: 3 WAADQLWQTALTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQK--------FLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHA-------------------------------PAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDW 228
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A836CKM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM3_9STRA) HSP 1 Score: 174 bits (440), Expect = 7.560e-47 Identity = 108/265 (40.75%), Postives = 138/265 (52.08%), Query Frame = 3
Query: 348 FPADMRTDTAVVNDGRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDMLDVLFTEFALNDYNSFPNRGE----SYELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTD-RHHPTNAVHAHLADILALYTAQRFLAW 1127
FP DT TN++LE +F+KC+TPGA I VGAVGGSIT G GA GV + AY R A +QR CP ATV+ V +G + S MCL +LG +D+L EF+LND + GE YELL R+ALS A PA+ GI FWG +F H + Q V R YG++G+S+RDVVWP PY ++ V D RHHP+ AVHAHL DI++L+ A+ W
Sbjct: 20 FPLAANADT--------TNEQLEVLFQKCVTPGASITVGAVGGSITAGAGA---GVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHA-------------------------------PALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRW 242
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A836CKC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC8_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.420e-41 Identity = 99/284 (34.86%), Postives = 143/284 (50.35%), Query Frame = 3
Query: 297 RGLAKRLQKFTADV---HARFPADMRTDTAVVNDGRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDMLDVLFTEFALNDYNSFPNRGE----SYELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAW 1127
+ LA Q TA + A P D A+ N G T ++L+ +F KC+TPGA I +G +GGSI+ D +YQ +L+ +CP ATV V G + S MC LG +D+L EF+LND++ + E SYEL +R+AL+ A PAV+G+ FWGP F + Q+ + +HYG++GIS+RD+VWPY +AP+ + VC+D HHPT AVH + A+++ALY + FL W
Sbjct: 32 KALALATQFATAHIAKMQAVRPEDQLLLNALKNHGASTERQLQVLFWKCITPGARIVLGVLGGSIS---------AFEDVSYQYPLGKFLRGLCPFATVEVHNGARAAHGSLTVGMCARCGLGQHVDMLILEFSLNDWSHYHRHNETACASYELALRTALTSFQHA-------------------------------PAVLGLFFWGPYFTKQSAQDYHEPLCKHYGVTGISMRDLVWPYIEAQKAPWTKRTDVCSDSHHPTPAVHLYTANLIALYVSGVFLDW 275
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A835ZGF8_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF8_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.580e-41 Identity = 96/249 (38.55%), Postives = 130/249 (52.21%), Query Frame = 3
Query: 396 LTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDMLDVLFTEFALNDYNSFPNRGE----SYELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTD-RHHPTNAVHAHLADILALYTAQRFLAW 1127
+T Q+LE +F KC+TPGA I V + GGSIT GGGA +V Y R A + ++CP A VT + +G + S MCL +LG +D+L EF+LND+ + G YELL+R+AL+ A PAV ++FWG F H++ QE V R YG++G+S+RDVVW APY KE + D +HHP VH HL DILAL+ AQ+ + W
Sbjct: 12 ITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANV---YIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHA-------------------------------PAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRW 226
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.450e-37 Identity = 91/286 (31.82%), Postives = 134/286 (46.85%), Query Frame = 3
Query: 285 PDLERGLAKRLQKFTADVHARFPADMRTDTAVVNDGRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDMLDVLFTEFALNDYNSFPNRGESY-----ELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAW 1127
PD + K +H +P D + ++ + G +T+Q+L +F KC+TPG+ IR+GA+GGSIT + ++Y + +MCP ATV G + + + MC T+ LD+ +EF+LND + ++ ELL R+ LS A PAV + FWG F HD+ Q V HY ++GIS+RD+VWPYY +APY ++ VC D HHP + A++L LY AQRF W
Sbjct: 50 PDAATATQLWVAKHIRHMHTTYPPDRLFENSLKHRGAITDQQLHPLFLKCITPGSTIRIGALGGSITH----------LPSSYIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCARTVTAPALDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPA-------------------------------PAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDGHHPNDRFQKFTAELLLLYVAQRFQEW 294
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A835YK35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK35_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.130e-35 Identity = 86/252 (34.13%), Postives = 120/252 (47.62%), Query Frame = 3
Query: 390 GRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILG--DMLDVLFTEFALNDYNSFPNRGE----SYELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAW 1127
G + ++++ FRKC+TPGA I VG +GGSI++ G YQ + L MCP A V + G + ++ S C T +G LD+ +EF ND + G YEL++RS L+ P P+V+ +HFWG DF H T Q K+ R Y +S +SIRDV+WPYY G+ PY +K+ D HP+ AVH AD+L + RFLAW
Sbjct: 1 GSSADVQMQNFFRKCVTPGAVINVGILGGSISQFG----------YGYQVTFIKQLAEMCPSAEVKLYNGARSSTPSMTLGYCAVTAMGGPSELDLFISEFTYNDGVKYTTDGAFSSLPYELMLRSVLTAF-------------------------------PYSPSVLTLHFWGLDFTHKTPQAALVKLARRYKVSALSIRDVIWPYYTAGRDPYGSKDKCTIDGRHPSLAVHQLTADLLQTHFVTRFLAW 211
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.720e-34 Identity = 85/251 (33.86%), Postives = 123/251 (49.00%), Query Frame = 3
Query: 390 GRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDMLDVLFTEFALNDYNSF--PNRGES---YELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAW 1127
G T +L +VF KC+TPGA+I VGA+GGSIT+ D ++ ++ L +CP A V + G + + + +C ++ LD+ EF+LND + PN S YEL R+ L T T+ PAV GI FWG F +D+ Q +V + YG++GIS+RD+VWPY+ +G+AP+ K VC+D HHP VH A + A +T L W
Sbjct: 11 GASTEAQLRNVFLKCVTPGADINVGAIGGSITEH----------DDSWAGNFSALLSHLCPRAQVRMHNGARASHGALTLGLCARAVMAPELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVL-----------------TGTDPT--------------PAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWPYFSKGRAPFATKADVCSDVHHPNAFVHGLTAQVSA-HTNMNELTW 219
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A835YLT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT4_9STRA) HSP 1 Score: 140 bits (352), Expect = 6.170e-33 Identity = 85/273 (31.14%), Postives = 125/273 (45.79%), Query Frame = 3
Query: 336 VHARFPADMRTDTAVVNDGRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDMLDVLFTEFALNDYNSFPN-----RGE----SYELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAW 1127
+ A +P D + ++ G +T+ +LE FRKC+TPG+ +RVGA+GGSIT T+Y L MCPHA VT + G + + + +C + LDV EFALND + RG+ YEL+MR+A F H++ QE +V R YG++G+S+RD+VWPY+ +APY A+ VC+D HHP A+++ LY A+RF+ W
Sbjct: 60 MRAHYPPDRLFENSLKLRGEVTDLQLEPFFRKCVTPGSAVRVGAIGGSITH----------APTSYVWSLGALLGEMCPHANVTALNGARSSHGALTLGLCARAVTHAALDVAVAEFALNDLGQYTRAEGAFRGQFSALPYELMMRNA--------------------------------------------------FTHESAQEAHEEVGRRYGVTGLSLRDLVWPYFTAKRAPYAARGDVCSDLHHPNAQFQHFTAELVLLYIAERFVEW 272
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A836CAR2_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR2_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.590e-31 Identity = 83/278 (29.86%), Postives = 130/278 (46.76%), Query Frame = 3
Query: 321 KFTADVHARFPADMRTDTAVVNDGRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDT-AYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPT-ILGDMLDVLFTEFALNDYNSFPNR------GESYELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAWL 1130
KF +H+ + + ++ G T+++LE+ +R+C+T GA I +G +GGSI SVD Y +A ++ MCP A V V G + + S MC T +L LD+ +F LND + + YE+++R+ L+ PPAV ++FWG F +DT Q+ + + Y +GIS+RD+VWP+Y G P+ K+H+ D HHP V D+L LY A+RF+ W+
Sbjct: 1268 KFMQQMHSNYTSAALFQNSLKTQGANTDKQLENFYRRCVTSGATIHIGILGGSI-----------SVDKEGYVGMFANRVREMCPSAYVAVHSGARNAAGSLTLGMCASTAMLTTKLDLFVADFTLNDSYKYKHTIKGIFTSTPYEIMLRNVLTQFEV-------------------------------PPAVFNLYFWGGAFTYDTQQDELDTLAKLYSTTGISLRDLVWPFYTSGTLPFSTKDHIVKDIHHPNRRVCQLTGDLLVLYMAERFVGWV 1503
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Match: A0A835YI83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI83_9STRA) HSP 1 Score: 128 bits (321), Expect = 4.080e-29 Identity = 86/273 (31.50%), Postives = 125/273 (45.79%), Query Frame = 3
Query: 324 FTADVHARFPADMRTDTAVVNDGRLTNQRLESVFRKCLTPGAEIRVGAVGGSITKGGGASGSGVSVDTAYQTRYAGWLQRMCPHATVTVVQGGKGTSNSFLPAMCLPTILGDM-LDVLFTEFALNDYNSFPNR-GES---YELLMRSALSLSTEAKDTHASRGDGATATESADGGAPVGAAGAPGPPAVMGIHFWGPDFIHDTNQEVDTKVLRHYGISGISIRDVVWPYYIRGQAPYDAKEHVCTDRHHPTNAVHAHLADILALYTAQRFLAW 1127
F + A FP D+ ++ +DG +T+++LE+VFRKC+ G IR+G MCP + V + G +G++ S MC T + +D+ EFALND + + G S YEL++R AL TA E PPA+ ++FWGP + T Q + + Y ++GISIRD+VWP+Y +APY + V D HHPT +H H AD+L LY + F AW
Sbjct: 71 FITMMQASFPPDLLFKNSLKDDGAVTDRQLENVFRKCVK-GDTIRLG--------------------------------EMCPLSEVILHNGSRGSTGSLTLGMCATTAMDTKAVDIFIAEFALNDTTQYTLKTGFSSLPYELMLRDAL-----------------TAFEV--------------PPAIFNLYFWGPGLTYKTGQPEYVALEKKYQLTGISIRDLVWPFYSHHRAPYALRSDVAVDIHHPTRQIHQHTADLLTLYMSFHFNAW 279 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20812.1 >prot_S-ischiensis_contig9.20812.1 ID=prot_S-ischiensis_contig9.20812.1|Name=mRNA_S-ischiensis_contig9.20812.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=331bp MSRQRYLLPVAMAWALVAEVSRVHGVAVEMLKQQPDLERGLAKRLQKFTAback to top mRNA from alignment at S-ischiensis_contig9:3482452..3484289- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20812.1 ID=mRNA_S-ischiensis_contig9.20812.1|Name=mRNA_S-ischiensis_contig9.20812.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1838bp|location=Sequence derived from alignment at S-ischiensis_contig9:3482452..3484289- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:3482452..3484289- >mRNA_S-ischiensis_contig9.20812.1 ID=mRNA_S-ischiensis_contig9.20812.1|Name=mRNA_S-ischiensis_contig9.20812.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1986bp|location=Sequence derived from alignment at S-ischiensis_contig9:3482452..3484289- (Schizocladia ischiensis KU_0333)back to top |