mRNA_S-ischiensis_contig9.20755.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20755.1
Unique NamemRNA_S-ischiensis_contig9.20755.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2972126..2972644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002100.1
Exons2
Model size204
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.7733142-CDS-S-ischiensis_contig9:2972125..29722071622817399.7733142-CDS-S-ischiensis_contig9:2972125..2972207Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2972126..2972207 +
1695741085.5314832-CDS-S-ischiensis_contig9:2972125..29722071695741085.5314832-CDS-S-ischiensis_contig9:2972125..2972207Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2972126..2972207 +
1622817399.7846096-CDS-S-ischiensis_contig9:2972523..29726421622817399.7846096-CDS-S-ischiensis_contig9:2972523..2972642Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2972524..2972642 +
1695741085.5472822-CDS-S-ischiensis_contig9:2972523..29726421695741085.5472822-CDS-S-ischiensis_contig9:2972523..2972642Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2972524..2972642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20755.1prot_S-ischiensis_contig9.20755.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2972126..2972642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20755.1

>prot_S-ischiensis_contig9.20755.1 ID=prot_S-ischiensis_contig9.20755.1|Name=mRNA_S-ischiensis_contig9.20755.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
PYRGALTSYGLRFTYRNSGTAKSNPGPGMYEARHITGGVQVKRPKSASPC
FSNTARRMDFTRDRPPC
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mRNA from alignment at S-ischiensis_contig9:2972126..2972644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20755.1 ID=mRNA_S-ischiensis_contig9.20755.1|Name=mRNA_S-ischiensis_contig9.20755.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=519bp|location=Sequence derived from alignment at S-ischiensis_contig9:2972126..2972644+ (Schizocladia ischiensis KU_0333)
CCGTACAGAGGGGCCCTGACATCGTATGGCCTCCGCTTCACATACCGCAA
TAGCGGCACGGCCAAGTCCAACCCAGGCCCAGGCAAGTGCTCTTTGATCC
GCGCAAAACACAAGGCCTGGAACTGGCGAGCAAGGGGTTTCAGATGCTTA
ACCTGAAACTGAACCATGAGGGACACTTACTCTACACGCAGGGGAAAGTG
TATGTTCTATGTGCACCCACTGGCATAGGGGCAGCTGCAGGAACTTGGCA
TTCGGCCGGGAGTGGCTCCAAAGGTGGCTGCATTGTGCACTATGCAACTT
TAGATGTGTGTTGAACAGCAGGGAGGAGCTTCTGGAGGGCAGGCATATTC
CCAACGTATTTTGTGAGCCGTCCTCACTCGTCTCGCTTGCCACTCCAGGC
ATGTACGAGGCACGACATATCACCGGGGGGGTCCAGGTGAAGCGACCAAA
GTCAGCGTCTCCGTGCTTTTCCAACACGGCCCGGAGGATGGATTTCACTC
GTGACAGGCCGCCCTGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2972126..2972644+

>mRNA_S-ischiensis_contig9.20755.1 ID=mRNA_S-ischiensis_contig9.20755.1|Name=mRNA_S-ischiensis_contig9.20755.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig9:2972126..2972644+ (Schizocladia ischiensis KU_0333)
CCGTACAGAGGGGCCCTGACATCGTATGGCCTCCGCTTCACATACCGCAA
TAGCGGCACGGCCAAGTCCAACCCAGGCCCAGCCGTACAGAGGGGCCCTG
ACATCGTATGGCCTCCGCTTCACATACCGCAATAGCGGCACGGCCAAGTC
CAACCCAGGCCCAGGCATGTACGAGGCACGACATATCACCGGGGGGGTCC
AGGTGAAGCGACCAAAGTCAGCGTCTCCGTGCTTTTCCAACACGGCCCGG
AGGATGGATTTCACTCGTGACAGGCCGCCCTGCGCATGTACGAGGCACGA
CATATCACCGGGGGGGTCCAGGTGAAGCGACCAAAGTCAGCGTCTCCGTG
CTTTTCCAACACGGCCCGGAGGATGGATTTCACTCGTGACAGGCCGCCCT
GC
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