mRNA_S-ischiensis_contig9.20752.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20752.1
Unique NamemRNA_S-ischiensis_contig9.20752.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A6H5L6F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F9_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 8.610e-78
Identity = 120/186 (64.52%), Postives = 143/186 (76.88%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRV-AQHYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLVAERCPWDRVDCVIKSV 555
            PGSGKTTLA++VC+RV ++   A+C+PMDG+HLYR ELD +PD  EAHRRRGAHWTFDG +F + L  ARR G GSFP FDHA GDPVE+   V  +H +V+VEGNYLLL+G++PWD  + GLFD  WAI CP   C ERVRRRH +TGL E  A  RVEGNDLPNARLV+E+CPW  VD VI S+
Sbjct:  207 PGSGKTTLAAEVCQRVQSEEISAICLPMDGYHLYRRELDLLPDPREAHRRRGAHWTFDGRRFLSELGDARRSGSGSFPGFDHARGDPVENQWVVQPSHSVVIVEGNYLLLKGVDPWDQ-VGGLFDVTWAIRCPPEVCGERVRRRHMSTGLGEEEACARVEGNDLPNARLVSEKCPWSEVDVVIDSL 391
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: D8LSL3_ECTSI (Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL3_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 3.940e-74
Identity = 118/186 (63.44%), Postives = 142/186 (76.34%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRV-AQHYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLVAERCPWDRVDCVIKSV 555
            PGSGKTTLA++VC+RV ++   A+C+PMDG+HLYR ELD +PD  EAHRRRGAHWTFDG +F + L  ARR G GSFP FDHA GDPVE+   V  +H +V+VEGNYLLL+G++PW+  + GLFD  WAI CP   C ERVRRRH +TGL E  A  RVEGNDL NARLV+E+CPW  VD VI S+
Sbjct:  342 PGSGKTTLAAEVCQRVQSEEISAICLPMDGYHLYRRELDLLPDPREAHRRRGAHWTFDGRRFLSELGDARRSGRGSFPGFDHARGDPVENQWMVQPSHSVVIVEGNYLLLKGVDPWNQ-VGGLFDVTWAIRCPPEVCGERVRRRHMSTGLEEEEARARVEGNDLLNARLVSEKCPWSEVDVVIDSL 526
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A835YY10_9STRA (Phosphoribulokinase/uridine kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY10_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.010e-57
Identity = 101/187 (54.01%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRV-AQHYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRG--LEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLVAERCPWDRVDCVIKS 552
            PG+GKTT+ + V   + ++      + MDGFHLYR ELDAMPD  EAHR+RGAHWTFD  KF  RLR+ R +G G+FPSFDH VGDPVEDDI V   H++V+VEGNYLLL G    PW+  +R LFD+ W +DCP  E   R+ +RH  TGLS+ AA  R E NDLPN   +        VD VI S
Sbjct:   10 PGAGKTTVCAGVAAALLSRGVGTAVVGMDGFHLYRRELDAMPDPAEAHRKRGAHWTFDAPKFLQRLREVRANGRGAFPSFDHCVGDPVEDDIVVGPEHQVVIVEGNYLLLSGDDASPWNE-IRPLFDQAWFLDCPESERRLRLVKRHMLTGLSKEAAELRTEDNDLPNGAFIVSHLDRAAVDRVISS 195
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A7S2UVB4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVB4_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.010e-55
Identity = 91/180 (50.56%), Postives = 125/180 (69.44%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRVAQH-YPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLVAER-CPWDRV 534
            PGSGK+T+AS+VC+RV       V +PMDGFHL R +LD M D +EAH RRGA +TFD      R+R+ RR+G G FPSFDH VGDPVEDD++V++ H++V+VEGNY+LL G+E W+  +   FDE WA+ C +    ER+ +RH  TG +   A++R + ND+ NA+LV    CP D++
Sbjct:   46 PGSGKSTIASEVCKRVLDSGVGCVVVPMDGFHLTRAQLDQMEDPQEAHARRGAPFTFDPRGLLERIRETRRNGRGLFPSFDHGVGDPVEDDVEVTRDHKIVIVEGNYVLLDGVEVWEE-ISSCFDETWAVKCSIETIRERIIKRHMITGDTHERAMKRADNNDVLNAKLVLNNYCPSDKI 224
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A7J7QPK4_9CHLO (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QPK4_9CHLO)

HSP 1 Score: 196 bits (498), Expect = 6.750e-55
Identity = 106/208 (50.96%), Postives = 134/208 (64.42%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRVAQ-------HYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKA-HRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLV----AERCPWDRVDCVIKSV*VLHQERVSTV 588
            PGSGK+TLA QV +R+ Q          A   PMDGFH Y+ +LDAMPD +EA+ RRGAHWTFDG  F A +R+ ++ G  S PSFDH VGDPVEDDI +  A H +VLVEGNYLLL  LEPW   LRG+FD+ W +DCP+    +RV  R  A GL+   +L R+EGND PNA LV    A R  W R    +++  +LH++ +  V
Sbjct:  103 PGSGKSTLAQQVAQRITQLCQQRGLSRTAAVAPMDGFHYYKQQLDAMPDPQEAYARRGAHWTFDGNAFVAAVRRLKQHGAASLPSFDHGVGDPVEDDIHIDSAQHAVVLVEGNYLLLE-LEPWVQ-LRGVFDDAWFVDCPVDLAMQRVFDRQVAIGLAPEVSLGRIEGNDKPNALLVNAVRALRDCWCRQPFHLQTARLLHEQVLQAV 308
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A383VR80_TETOB (PRK domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VR80_TETOB)

HSP 1 Score: 182 bits (462), Expect = 1.100e-50
Identity = 94/177 (53.11%), Postives = 118/177 (66.67%), Query Frame = 1 
Query:    1 PGSGKTTLA-------SQVCRRVAQHYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKA-HRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLV 507
            PGSGK+TLA       SQ+CR+      A   PMDGFH Y+ +LD+MP+ +EA+ RRGAHWTFDG  F A +R+ ++ G  S PSFDH VGDP+EDDIQ+  A H +VLVEGNYL L   +PW   LRGLFD+ W +DCP+    +RV  R  A GL+   +L R+ GND PNA LV
Sbjct:   79 PGSGKSTLAQQVACRISQLCRQRGMSRTAAVAPMDGFHYYKKQLDSMPEPQEAYARRGAHWTFDGAAFVAAIRRLKQHGAASLPSFDHGVGDPIEDDIQIDAAQHAVVLVEGNYLFLEQ-DPWVQ-LRGLFDDAWFVDCPVDLAMQRVFDRQVAIGLAPDVSLGRIAGNDRPNAVLV 253
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A4R1FA34_9GAMM (Pantothenate kinase n=2 Tax=Cocleimonas flava TaxID=634765 RepID=A0A4R1FA34_9GAMM)

HSP 1 Score: 176 bits (447), Expect = 2.010e-49
Identity = 89/174 (51.15%), Postives = 118/174 (67.82%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRVAQHYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLVAERCP 522
            PGSGK+TLA+++ +R+      + IP+DG+H YR ELD M D  EAH RRGA +TF+  +F   L +A+R GEGSFPSFDH +GDP+EDDI++ K HR+VLVEGNYLLL   +PW      +FDE W ++  + EC  R+ +RH   GLSE  AL+RV  +D  NA L+A   P
Sbjct:   32 PGSGKSTLAAELQKRLVDLL--LVIPLDGYHYYRSELDQMDDPAEAHMRRGAPFTFNSARFTNELIEAKRSGEGSFPSFDHRIGDPIEDDIKLLKPHRIVLVEGNYLLLDA-DPWSQLRDLVFDEAWYLNVSVDECKRRLMKRHVDVGLSEEQALQRVMTSDGMNAELIAAESP 202
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A7S0UY95_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0UY95_9CRYP)

HSP 1 Score: 174 bits (441), Expect = 1.970e-48
Identity = 91/173 (52.60%), Postives = 114/173 (65.90%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRVAQHYPAVC--IPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRAT-GLSEAAALERVEGNDLPNARLVA 510
            PGSGK+TL ++V  ++ Q     C  +PMDGFH YR ELDAM ++EEAH RRGAHWTF+  +  A L+ AR+ G    PSFDHAVGDPVE DI+V ++ ++V+VEGNYLLL G  PW   L GLFDE W + C  G   +RV  R+ A  G       ER + NDL NARL+A
Sbjct:   40 PGSGKSTLCAKVAEKI-QEMGIECKVLPMDGFHFYRRELDAMANSEEAHARRGAHWTFNATRMVAELQSARKTGARRMPSFDHAVGDPVEGDIEVCESDQIVIVEGNYLLLYGESPWGE-LEGLFDERWFVSCEEGVLRDRVVTRNSAAWGWDRKRTEERFDANDLLNARLIA 210
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: A0A7S2V868_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V868_9STRA)

HSP 1 Score: 175 bits (443), Expect = 5.670e-48
Identity = 89/172 (51.74%), Postives = 117/172 (68.02%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRV-AQHYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLVAE 513
            PGSGKTTL  +VC+RV A     + +PMDGFHL R +L  M + +EA  RRGA +TFD +    RLR+AR+ G G FPSFDHAVGDPV+DDI+V++ HR+V+VEGNYLLL G + W   +   FDE W + C + +  ER+  RH +TG S   A+ R + NDL NA+LV +
Sbjct:   88 PGSGKTTLTGEVCKRVVASGVGCIVVPMDGFHLSRAQLGQMDNPKEAFSRRGAPFTFDPKGLLERLREARQIGCGLFPSFDHAVGDPVQDDIEVTRKHRIVIVEGNYLLLDGFDVWKE-MPSCFDETWVVKCDVQKIRERIIERHISTGDSLENAVRRADHNDLLNAKLVLD 258
[Close]
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Match: L1J7P8_GUITC (PRK domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J7P8_GUITC)

HSP 1 Score: 173 bits (438), Expect = 5.960e-48
Identity = 89/173 (51.45%), Postives = 114/173 (65.90%), Query Frame = 1 
Query:    1 PGSGKTTLASQVCRRVA-QHYPAVCIPMDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSFPSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEEWAIDCPLGECAERVRRRHR-ATGLSEAAALERVEGNDLPNARLVAE 513
            PGSGK+T+ S++   ++ +  PA  +PMDGFH YR ELD M + EEAH RRGAHWTF+  KF   L + + +G G  PSFDHA GDPVED I + + HR++LVEGNY+LL  +EPW   L+ LFDE+W I CP     ERV +R+  A G        RV+ ND+ NARLV E
Sbjct:   36 PGSGKSTICSKLVSSLSGRGVPAAILPMDGFHYYRSELDTMQNREEAHARRGAHWTFNAHKFVDMLARMKDEGSGRAPSFDHAHGDPVEDAISIEREHRVILVEGNYVLLYDIEPWRK-LQHLFDEKWLIVCPEHVLRERVIQRNSVAWGWDRERTARRVDENDMVNARLVME 207
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F9_9PHAE8.610e-7864.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSL3_ECTSI3.940e-7463.44Phosphoribulokinase/uridine kinase family protein ... [more]
A0A835YY10_9STRA2.010e-5754.01Phosphoribulokinase/uridine kinase (Fragment) n=1 ... [more]
A0A7S2UVB4_9STRA6.010e-5550.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7J7QPK4_9CHLO6.750e-5550.96P-loop containing nucleoside triphosphate hydrolas... [more]
A0A383VR80_TETOB1.100e-5053.11PRK domain-containing protein n=1 Tax=Tetradesmus ... [more]
A0A4R1FA34_9GAMM2.010e-4951.15Pantothenate kinase n=2 Tax=Cocleimonas flava TaxI... [more]
A0A7S0UY95_9CRYP1.970e-4852.60Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2V868_9STRA5.670e-4851.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
L1J7P8_GUITC5.960e-4851.45PRK domain-containing protein n=2 Tax=Guillardia t... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2960842..2965132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue2.4e-54
Seed eggNOG ortholog2880.D8LSL3
Preferred nameCAMKMT
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K18826,ko:K21804
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008277,GO:0008757,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016043,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018025,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031072,GO:0031323,GO:0031326,GO:0032101,GO:0032259,GO:0032268,GO:0032991,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.calmodulin-lysine N-methyltransferase activity
EggNOG OGsCOG1072@1,KOG2702@2759,KOG3201@1,KOG3201@2759
EC2.1.1.60
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-09_002060.1
Exons4
Model size1315
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20752.1prot_S-ischiensis_contig9.20752.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2961116..2964375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.5760021-UTR-S-ischiensis_contig9:2960841..29608741622817399.5760021-UTR-S-ischiensis_contig9:2960841..2960874Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2960842..2960874 +
1695741085.3815994-UTR-S-ischiensis_contig9:2960841..29608741695741085.3815994-UTR-S-ischiensis_contig9:2960841..2960874Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2960842..2960874 +
1622817399.5902236-UTR-S-ischiensis_contig9:2961070..29611151622817399.5902236-UTR-S-ischiensis_contig9:2961070..2961115Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2961071..2961115 +
1695741085.3970327-UTR-S-ischiensis_contig9:2961070..29611151695741085.3970327-UTR-S-ischiensis_contig9:2961070..2961115Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2961071..2961115 +
1622817399.6371934-UTR-S-ischiensis_contig9:2964375..29651321622817399.6371934-UTR-S-ischiensis_contig9:2964375..2965132Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2964376..2965132 +
1695741085.4456272-UTR-S-ischiensis_contig9:2964375..29651321695741085.4456272-UTR-S-ischiensis_contig9:2964375..2965132Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2964376..2965132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.6032622-CDS-S-ischiensis_contig9:2961115..29611381622817399.6032622-CDS-S-ischiensis_contig9:2961115..2961138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2961116..2961138 +
1695741085.4076254-CDS-S-ischiensis_contig9:2961115..29611381695741085.4076254-CDS-S-ischiensis_contig9:2961115..2961138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2961116..2961138 +
1622817399.6140537-CDS-S-ischiensis_contig9:2962963..29631381622817399.6140537-CDS-S-ischiensis_contig9:2962963..2963138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2962964..2963138 +
1695741085.41849-CDS-S-ischiensis_contig9:2962963..29631381695741085.41849-CDS-S-ischiensis_contig9:2962963..2963138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2962964..2963138 +
1622817399.6247823-CDS-S-ischiensis_contig9:2964093..29643751622817399.6247823-CDS-S-ischiensis_contig9:2964093..2964375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2964094..2964375 +
1695741085.4297056-CDS-S-ischiensis_contig9:2964093..29643751695741085.4297056-CDS-S-ischiensis_contig9:2964093..2964375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2964094..2964375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20752.1

>prot_S-ischiensis_contig9.20752.1 ID=prot_S-ischiensis_contig9.20752.1|Name=mRNA_S-ischiensis_contig9.20752.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=160bp
MDGFHLYRCELDAMPDAEEAHRRRGAHWTFDGEKFAARLRQARRDGEGSF
PSFDHAVGDPVEDDIQVSKAHRLVLVEGNYLLLRGLEPWDPGLRGLFDEE
WAIDCPLGECAERVRRRHRATGLSEAAALERVEGNDLPNARLVAERCPWD
RVDCVIKSV*
back to top

mRNA from alignment at S-ischiensis_contig9:2960842..2965132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20752.1 ID=mRNA_S-ischiensis_contig9.20752.1|Name=mRNA_S-ischiensis_contig9.20752.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4291bp|location=Sequence derived from alignment at S-ischiensis_contig9:2960842..2965132+ (Schizocladia ischiensis KU_0333)
CCTGGGTCAGGGAAAACAACTCTGGCGAGCCAGGTGCGTTTCGGTGGCCG
CAGTGCACACCACTGGCATACGATGTGACGTGCGTGTCGCGGAGGGTTTT
TTCACGCATACTGTTGACCCCATGGGATATTCCTTCCCACCCATCTCATT
TCAAACTCATCACGGACCCAGTGCTGGCGTTCCATTGCATTTGCGCGTAA
CTGCAATGACGCCCGTTGCCCACACTCAGGTCTGTCGCCGTGTGGCACAA
CACTACCCTGCGGTCTGCATCCCCATGGACGGTTTCCACCTGTACAGGTG
AGCTTAGTCCAGCTCTAGTACAAGCATAGGGTCAGGATTGCCCGGAGCTG
CCGCACGCTCGGGAGGTGGGGGGGCAGTCGAATGATCTCTGGTCTAACGT
AAGCAAAACACAATGCCTTAGTTGTATATTGACAAATCTATTCCTGCCGT
TACTGCAACTCACGGTGCCAACACCTGGTTTAGAGCTGTGGTTTTTTCGA
ATGATGCAAAGATGGAAAGCCTGCCTTCTTTTTGCTCCCCCCCGTCCTCT
ACAGATGTGCGCCAAAGCTCCCACGTCACCTGCATCTCCCGGGATCTTGC
AGCTTGAGAAGCCCCGGGTATTTTTACCATCTTCTAATCCTCCTTGCCGC
GAGTCCATCGACATCCCTGCCCGCCCCTTGCCTCTCCGCTACCTACCACC
GAAGTGACCATCTCTGCAGCACCTTGGCGCCCTGTTTCGCCCACCTCCTT
GGTGTGGCTTGCGCGTGAGTCGTTCACCTGAATCCTCGAGTTGCAGATTC
ACGGAAGAACCCGGCAATGCGTTTTCATCGCCATATTAAGCCCGGTTGTC
CAGTGTTTAAACCTGGCTGCCCGATTGACTTGCCCCGTCCCATTCCTCTG
CCTCCTCTTCCTTCCCCCCCCCCCCCGCTcCCCCCCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCCCGTCCACCTCCCCTTCCCCACACAAA
TTTCCCCTGGCGAGCTATAAGGAAGAGCCACTGCTGGTCTCTAAGTGAAG
TGGCCCGCACCTCGCCCTGTATTGGTCCTGTTAGTACTGCCGTACACGCC
ATAGTACCCCTCTTTCCAAACTGGGCCAGACACCACTCTGGTAAGCTACT
TATAAGTGAGGTTTAAACGAGTGTAATGCTGAGTTCGCTTGGTTTATGAA
CTGCCCACCCGCTTCATTCTTTCTTCCATTCCCCTGCCCGCCCCGGTGAT
CATGCCACCACGGCCGCCCTCCAACGCCGGCGCCACAGGCCTGCTTTGGC
ACACGATTTCAAAACTGTTGCGGCTCTACGCCTGGCGCACTTACCTAACC
CTGTCATCTATAAGTTATGTGGGCCACACCGCATGGCAAGCACGACGTGA
GTAGCGCAGTACTCGAGTACCTACTCTACATCTACAAGAGAGTGCTTCCA
AGTAGTTTGTAGTGCAGTACAGTAGAGTCCTGCCCCTCCCACCCCGGCTC
TGCCAGGGGCGGCGGGGGGGTGCCCCATCTCGGTCGGGGGGCGCGCGGCC
CTGGCCCATGGTCTCGGGACTACCTACAGCAACAACAACGTACAGTAAAT
CGCATGCTTCCAAGGCACTTGAAGTGCACCGTAGCATGCACACGGGTGCC
CCCACCCCCCCCGTCCATGGCGGGTGTAGTTTGACATAACATAACATCAC
GTCACATCACACCACAGTGGTGTCCCGTCGTCCGCTAAGGGTTAAGTAGT
GCCTACTGCAAAGTACTTGGTAGTACGGTACAGCAGGTGGTCTGTAGGTA
CTTGCGGAAGTACGGCACAGCACCTGCAAGACAAGCTGAACAACTGTACA
GTATCAACAGGAAAAACACCGGGCGAGGTGCGGGCCACGTCACTAGTAGT
ACGGTCCAGCAGATGGTCTGCAGGTACTTGCGGAAGTACGGCACAGCACC
TGCAAGACAACCTGAACAACTGTACAGTATCAACAGGAACAACACTGGGC
GAGGTGCGGGCCACGTCACTAGAGACCTCAGCGCCTTCCTTATAGCTCGC
CGGGGGTAATTTGTGCGTACAGTAGCTATAAGCAAGTTCTGTCCTTCCCT
CCTCCCCCCTCTACCCCTGCAGATGCGAGCTAGACGCTATGCCCGACGCG
GAGGAGGCCCACCGGAGACGTGGGGCGCACTGGACCTTTGACGGCGAGAA
ATTCGCGGCCCGGCTGCGCCAGGCACGGCGGGACGGGGAGGGCTCCTTCC
CCAGCTTTGACCACGCCGTGGGCGACCCGGTCGAGGACGACATACAGGTG
CGCGGGGTCCGGTGGGGTGGGTGGGTGGCTGGTTGGACAGTGATGGAATA
TCGATCAGCAGATAGTTGGCGGGCTCGACTGATTTTGTGGGTGACACCAC
TAGCTACTTCTTGGATTTAGTGTGGGTCAAACTATCGAATATTGACTATC
GATAGATATATACGAGTACTTTGAAGTAGATCAGTACATATACTGTCCAT
AAATAGGTTGATTTGTTTAGATTTTCCATCACTGTGGTTGGGTGGTGCAG
AGAACGACGCCGGGTAGGTGGGTGGGGGAGGGGGCTCAAAGGTGTGATGT
ATGCGGGGGCAGCGGTGTTTGCAACGAGACACAGGGAGGGCTCCTTCCCC
AGCTTGGGTGGTGGCACGTGCTTTGGGGGCATTGCCACGACGCATGCTCA
GGCACTCATCACGCACGCACGCACACATGCACGCGCACACACGCTCGGAC
GTCCGACGCGAACGCCTTGCCCGGTGTCCGAGGCCCGCCGCCTCATCCTC
GCCCTATAGTGCCTCGCAAGCACGCACACACACACACACACACACACACA
CACGGCACATGCGTGCACTTGACGTCCCAAAAAAAACGCCTCATGAGGTG
TCCCCGCCCCCCCGGGCCATCGCCTTCCCAGCAGGCATGAACGCACAACA
CACACACGCGCGAACACACGTTCCGGGAGACGCGTTTCAGCCCGGTATAC
TAAATATAAACGCGTAGAGTAACAACACACATCCTCCGATGCTGAAGACC
CTATACTTGCCAGTATTAACAGGAACAACACGGGGCGAGGTGCGAGCCAC
GTCACTAGAGACCTCAGCAGTGGCCCTTCCTGATAGCTCGCCAGGAGAAA
AAAAATGTGTTACACTTACTATGTAGCAGTGTTGCGAGGAGATTTCTACT
CAACACTACTGGGTTCCGGATGCCTGAAACGAGCAAAACGCCGCCTTGCC
AGGTGTCCAAGGCCCACCGGCTCGTCCTCGTGGAGGGCAACTACCTGCTG
CTGCGGGGGCTGGAGCCCTGGGACCCGGGCCTGCGTGGTCTCTTCGACGA
GGAGTGGGCCATCGACTGCCCCCTCGGCGAGTGCGCGGAGCGGGTGCGCC
GGCGGCACCGGGCCACGGGCTTGAGCGAGGCAGCCGCCCTTGAGCGGGTG
GAGGGCAACGACCTGCCCAACGCCCGGCTGGTGGCGGAGCGGTGCCCGTG
GGACCGGGTGGACTGTGTCATCAAGAGCGTGTAAGTTCTTCATCAAGAGC
GTGTAAGTACTGTACAGTAGTAGCCTTGTGTTAGAGCTATACTGTGCGAT
AGTTTATGGCAGACTGAGAAGTCACTTGCTGGTCCAACGCCCGGCTGGTG
GCGGAGTGGTGCCCGTGGGACCGGGCAGACCATGTCATCAAGAGCGTGTA
CAGTAGTACCGCATTCGTCGGAGCGATCTTTCCCCCCCATGCCAAACTTC
GCGAGGGCATTTCTCGCCAAATACTGGTCGGATCCGCGCAGGAAAGCTCG
GAAAATCTCCCTCAGGACCTGGGGGAACTTTTCCGACTGGGGGAACTTTT
CCGAGGGCTTTCGGGACAATCCAGAGCCTTCCCGGCTAGAAATATTCCCC
CGAAAATGGCCTGTGGAGGCAAAATCTCTCCGACGGTTGCGGTAGCCTTG
TGTTGTAGACAAGGAGCGGCCTGGGCGGCTTCGCCGCCCCCGCACTTCTC
GAGCTTCGCCCTAGGCTCGCCTTGGGGATTTCCACCAAGTCGTTACAAAG
AGCTGCCCAGTGAACCGGCCGAGCGAACCGCGAGCATGACAACGGCAGGA
CCACCCCCAACGCGATCCGCACAATCTCCGTGGCCGATCCGACACTCGGT
CGGACGGTCGCTCTACATCTGCCTGCAGACCGCGGGAAAAATTCAAAGCG
ATCGAGCCGGCCCGGACCGGTGCGCCGATTGCCCGCCGACCGGCCTCGGC
GACACCGATTGCTCATTGGCAACAGTGCATGCAAACTGGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2960842..2965132+

>mRNA_S-ischiensis_contig9.20752.1 ID=mRNA_S-ischiensis_contig9.20752.1|Name=mRNA_S-ischiensis_contig9.20752.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig9:2960842..2965132+ (Schizocladia ischiensis KU_0333)
ATGGACGGTTTCCACCTGTACAGATGGACGGTTTCCACCTGTACAGATGC
GAGCTAGACGCTATGCCCGACGCGGAGGAGGCCCACCGGAGACGTGGGGC
GCACTGGACCTTTGACGGCGAGAAATTCGCGGCCCGGCTGCGCCAGGCAC
GGCGGGACGGGGAGGGCTCCTTCCCCAGCTTTGACCACGCCGTGGGCGAC
CCGGTCGAGGACGACATACAGATGCGAGCTAGACGCTATGCCCGACGCGG
AGGAGGCCCACCGGAGACGTGGGGCGCACTGGACCTTTGACGGCGAGAAA
TTCGCGGCCCGGCTGCGCCAGGCACGGCGGGACGGGGAGGGCTCCTTCCC
CAGCTTTGACCACGCCGTGGGCGACCCGGTCGAGGACGACATACAGGTGT
CCAAGGCCCACCGGCTCGTCCTCGTGGAGGGCAACTACCTGCTGCTGCGG
GGGCTGGAGCCCTGGGACCCGGGCCTGCGTGGTCTCTTCGACGAGGAGTG
GGCCATCGACTGCCCCCTCGGCGAGTGCGCGGAGCGGGTGCGCCGGCGGC
ACCGGGCCACGGGCTTGAGCGAGGCAGCCGCCCTTGAGCGGGTGGAGGGC
AACGACCTGCCCAACGCCCGGCTGGTGGCGGAGCGGTGCCCGTGGGACCG
GGTGGACTGTGTCATCAAGAGCGTGTAAGTGTCCAAGGCCCACCGGCTCG
TCCTCGTGGAGGGCAACTACCTGCTGCTGCGGGGGCTGGAGCCCTGGGAC
CCGGGCCTGCGTGGTCTCTTCGACGAGGAGTGGGCCATCGACTGCCCCCT
CGGCGAGTGCGCGGAGCGGGTGCGCCGGCGGCACCGGGCCACGGGCTTGA
GCGAGGCAGCCGCCCTTGAGCGGGTGGAGGGCAACGACCTGCCCAACGCC
CGGCTGGTGGCGGAGCGGTGCCCGTGGGACCGGGTGGACTGTGTCATCAA
GAGCGTGTAA
back to top