mRNA_S-ischiensis_contig9.20733.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20733.1
Unique NamemRNA_S-ischiensis_contig9.20733.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20733.1 vs. uniprot
Match: A0A6H5KQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.560e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 LATVCRERQAENLALVGSLPGMGFASLARAAEAEGVPLVARAALADLLECLHLDVEPLVPQPPIRYIRVWD 213
            LA++C+ER   N+ALV SL G  +  L     +E VP   RAA A LLE  HL+V PL+P+PP+RY+R+ D
Sbjct:  669 LASLCQERHEGNIALVRSLKGTTYKELMEVVRSETVPPTVRAAFAQLLEHCHLNVAPLLPRPPVRYVRLKD 739
[Close]
BLAST of mRNA_S-ischiensis_contig9.20733.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.580e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 LATVCRERQAENLALVGSLPGMGFASLARAAEAEGVPLVARAALADLLECLHLDVEPLVPQPPIRYIRVWD 213
            LA++C+ER   N+ALV SL G  +  L     +E VP   RAA A LLE  HL+V PL+P+PP+RY+R+ D
Sbjct: 1431 LASLCQERHKGNIALVRSLKGTTYKELMEVVRSETVPPTVRAAFAQLLEHCHLNVAPLLPRPPVRYVRLKD 1501
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQK2_9PHAE2.560e-1149.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMW8_ECTSI2.580e-1149.30Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2865908..2866484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue4e-10
Seed eggNOG ortholog2880.D7FMW8
Preferred nameRYR1
KEGG koko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963
KEGG TC1.A.3.1,1.A.3.1.2,1.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414
EggNOG free text desc.inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
EggNOG OGsKOG3533@1,KOG3533@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04040,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.1588254-CDS-S-ischiensis_contig9:2865909..28660181622817398.1588254-CDS-S-ischiensis_contig9:2865909..2866018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2865910..2866018 -
1695741084.329164-CDS-S-ischiensis_contig9:2865909..28660181695741084.329164-CDS-S-ischiensis_contig9:2865909..2866018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2865910..2866018 -
1622817398.1737194-CDS-S-ischiensis_contig9:2866290..28664841622817398.1737194-CDS-S-ischiensis_contig9:2866290..2866484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2866291..2866484 -
1695741084.3441305-CDS-S-ischiensis_contig9:2866290..28664841695741084.3441305-CDS-S-ischiensis_contig9:2866290..2866484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2866291..2866484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20733.1prot_S-ischiensis_contig9.20733.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2865910..2866484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20733.1

>prot_S-ischiensis_contig9.20733.1 ID=prot_S-ischiensis_contig9.20733.1|Name=mRNA_S-ischiensis_contig9.20733.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
LATVCRERQAENLALVGSLPGMGFASLARAAEAEGVPLVARAALADLLEC
LHLDVEPLVPQPPIRYIRVWDRIRVAGATAAEEAAVAAAGGAAAVEDEEQ
E
back to top

mRNA from alignment at S-ischiensis_contig9:2865908..2866484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20733.1 ID=mRNA_S-ischiensis_contig9.20733.1|Name=mRNA_S-ischiensis_contig9.20733.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=577bp|location=Sequence derived from alignment at S-ischiensis_contig9:2865908..2866484- (Schizocladia ischiensis KU_0333)
CTGGCGACGGTCTGCCGGGAGAGGCAGGCGGAGAACCTGGCGCTCGTGGG
CTCGCTGCCGGGCATGGGGTTTGCCAGCCTTGCGAGGGCGGCGGAGGCGG
AGGGGGTGCCGCTGGTGGCGCGGGCAGCGCTGGCGGACCTCCTGGAGTGC
CTCCACCTGGACGTGGAGCCCTTGGTGCCCCAGCCGCCCATCCGGTGGGT
GTGGGTAGGTCGTGCTTGGGGGTTGGGAGGTTGACGGCGTGTTTGTTTCA
GTGATGGAATATCGATCAGCAGATACCTATCGGGCTCCACTGACTTTGTG
GGTGGCGCTACCAACTACTTGGATTTAGTGTGGGTCAAACTATCGAATAT
CGACTATCGATAGATATATAGATCAGTACTGTCAATAAATAGGTTGATTG
CTTAGATATTCCGTCACTGATATGCACCGGCCTGCTGCTGTACTGCACCC
ACGACGCTCGCAACAGGTACATACGGGTGTGGGATCGGATACGCGTCGCA
GGCGCCACGGCGGCTGAGGAGGCAGCAGTGGCGGCGGCGGGGGGGGCAGC
AGCGGTGGAGGACGAGGAGCAGGAGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2865908..2866484-

>mRNA_S-ischiensis_contig9.20733.1 ID=mRNA_S-ischiensis_contig9.20733.1|Name=mRNA_S-ischiensis_contig9.20733.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig9:2865908..2866484- (Schizocladia ischiensis KU_0333)
CTGGCGACGGTCTGCCGGGAGAGGCAGGCGGAGAACCTGGCGCTCGTGGG
CTCGCTGCCGGGCATGGGGTTTGCCAGCCTTGCGAGGGCGGCGGAGGCGG
AGGGGGTGCCGCTGGTGGCGCGGGCAGCGCTGGCGGACCTCCTGGAGTGC
CTCCACCTGGACGTGGAGCCCTTGGTGCCCCAGCCGCCCATCCGCTGGCG
ACGGTCTGCCGGGAGAGGCAGGCGGAGAACCTGGCGCTCGTGGGCTCGCT
GCCGGGCATGGGGTTTGCCAGCCTTGCGAGGGCGGCGGAGGCGGAGGGGG
TGCCGCTGGTGGCGCGGGCAGCGCTGGCGGACCTCCTGGAGTGCCTCCAC
CTGGACGTGGAGCCCTTGGTGCCCCAGCCGCCCATCCGGTACATACGGGT
GTGGGATCGGATACGCGTCGCAGGCGCCACGGCGGCTGAGGAGGCAGCAG
TGGCGGCGGCGGGGGGGGCAGCAGCGGTGGAGGACGAGGAGCAGGAGGTA
CATACGGGTGTGGGATCGGATACGCGTCGCAGGCGCCACGGCGGCTGAGG
AGGCAGCAGTGGCGGCGGCGGGGGGGGCAGCAGCGGTGGAGGACGAGGAG
CAGGAG
back to top