mRNA_S-ischiensis_contig9.20719.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20719.1
Unique NamemRNA_S-ischiensis_contig9.20719.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20719.1 vs. uniprot
Match: D8LSM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.050e-21
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:  112 TDVEVLLELPVGGSKSLGVTLARNPREDKIFVKAFPRGPGGQRGLLESTRLVEVGDCLAAVNGGPVDQSN-LALATSILRSAEWPLSL 372
            T+VEV L +P   S   GVT A++PR++KIF+KAFPRGP G+RG+LEST LVE+ DCL A+NG  VD+S+ L    + +R+AE PLSL
Sbjct:    6 TEVEVELHVPDDVSTFFGVTWAQDPRKNKIFIKAFPRGPNGRRGILESTGLVELDDCLTAINGVSVDKSSALHEVMASIRAAESPLSL 93
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM8_ECTSI2.050e-2156.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2820651..2821390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-09_002240.1
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817397.7502522-CDS-S-ischiensis_contig9:2820650..28208241622817397.7502522-CDS-S-ischiensis_contig9:2820650..2820824Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2820651..2820824 -
1695741083.9778776-CDS-S-ischiensis_contig9:2820650..28208241695741083.9778776-CDS-S-ischiensis_contig9:2820650..2820824Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2820651..2820824 -
1622817397.7627342-CDS-S-ischiensis_contig9:2821192..28213901622817397.7627342-CDS-S-ischiensis_contig9:2821192..2821390Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2821193..2821390 -
1695741083.9907506-CDS-S-ischiensis_contig9:2821192..28213901695741083.9907506-CDS-S-ischiensis_contig9:2821192..2821390Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2821193..2821390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20719.1prot_S-ischiensis_contig9.20719.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2820651..2821390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20719.1

>prot_S-ischiensis_contig9.20719.1 ID=prot_S-ischiensis_contig9.20719.1|Name=mRNA_S-ischiensis_contig9.20719.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
MQLWRLQFTPNPLGALTMDVPRAWTPARARGGQRGHDTDVEVLLELPVGG
SKSLGVTLARNPREDKIFVKAFPRGPGGQRGLLESTRLVEVGDCLAAVNG
GPVDQSNLALATSILRSAEWPLSL
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mRNA from alignment at S-ischiensis_contig9:2820651..2821390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20719.1 ID=mRNA_S-ischiensis_contig9.20719.1|Name=mRNA_S-ischiensis_contig9.20719.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=740bp|location=Sequence derived from alignment at S-ischiensis_contig9:2820651..2821390- (Schizocladia ischiensis KU_0333)
ATGCAGCTCTGGAGGTTGCAATTCACGCCAAACCCCCTTGGTGCTCTCAC
CATGGATGTGCCGAGGGCATGGACGCCGGCAAGAGCTCGAGGAGGGCAGA
GAGGACACGACACCGACGTAGAGGTGTTGTTGGAATTGCCGGTGGGCGGG
TCCAAGTCCCTGGGGGTCACGCTCGCTCGCAATCCTCGCGAGGACAAGGT
GCGGGAACATGATCAGGGGGGGAAAGCGCTGGCTGCTTGCTAGTGCGCAG
GGAGCGGCGGAGCGCGCCCAGGGACCTCATTTGCAAATGCTCCCGTCTGT
GTTTCCCAGACATTCAGGGTGTGTGGTCTGAGCTCCACAATCCCCCTCGA
GTACTTCGAAGCATATACACATAGTACATACTCGAGTACCCGTGTATATA
TATATGTACTCACACTGTGCTTGTCGCAGTCCCGAGACCATTGACCACGC
GACTCAATCGAGACGGAGCAGTACACAGCGTATCGTTGCAGATTACGCTC
CTTGCCACGGACCTATTAAAGTCGGTGGTGCCCTCCTGCCTGCCTGCTTT
TGTCCGGCCGTTTCAGATCTTCGTCAAAGCATTCCCCCGCGGGCCGGGCG
GCCAGCGGGGTCTGCTAGAGTCCACCAGGCTGGTGGAGGTGGGAGACTGC
CTGGCCGCCGTTAACGGAGGCCCCGTCGACCAATCGAACCTCGCCCTGGC
CACATCGATCCTCCGCTCGGCCGAGTGGCCGCTGTCTCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2820651..2821390-

>mRNA_S-ischiensis_contig9.20719.1 ID=mRNA_S-ischiensis_contig9.20719.1|Name=mRNA_S-ischiensis_contig9.20719.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig9:2820651..2821390- (Schizocladia ischiensis KU_0333)
ATGCAGCTCTGGAGGTTGCAATTCACGCCAAACCCCCTTGGTGCTCTCAC
CATGGATGTGCCGAGGGCATGGACGCCGGCAAGAGCTCGAGGAGGGCAGA
GAGGACACGACACCGACGTAGAGGTGTTGTTGGAATTGCCGGTGGGCGGG
TCCAAGTCCCTGGGGGTCACGCTCGCTCGCAATCCTCGCGAGGACAAGAT
GCAGCTCTGGAGGTTGCAATTCACGCCAAACCCCCTTGGTGCTCTCACCA
TGGATGTGCCGAGGGCATGGACGCCGGCAAGAGCTCGAGGAGGGCAGAGA
GGACACGACACCGACGTAGAGGTGTTGTTGGAATTGCCGGTGGGCGGGTC
CAAGTCCCTGGGGGTCACGCTCGCTCGCAATCCTCGCGAGGACAAGATCT
TCGTCAAAGCATTCCCCCGCGGGCCGGGCGGCCAGCGGGGTCTGCTAGAG
TCCACCAGGCTGGTGGAGGTGGGAGACTGCCTGGCCGCCGTTAACGGAGG
CCCCGTCGACCAATCGAACCTCGCCCTGGCCACATCGATCCTCCGCTCGG
CCGAGTGGCCGCTGTCTCTGATCTTCGTCAAAGCATTCCCCCGCGGGCCG
GGCGGCCAGCGGGGTCTGCTAGAGTCCACCAGGCTGGTGGAGGTGGGAGA
CTGCCTGGCCGCCGTTAACGGAGGCCCCGTCGACCAATCGAACCTCGCCC
TGGCCACATCGATCCTCCGCTCGGCCGAGTGGCCGCTGTCTCTG
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