mRNA_S-ischiensis_contig9.20544.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20544.1
Unique NamemRNA_S-ischiensis_contig9.20544.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20544.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.810e-14
Identity = 95/314 (30.25%), Postives = 136/314 (43.31%), Query Frame = 3 
Query:  417 KLTLTYTDAEGDDVTFDTDAELALAVRTCSSPLRVTVK--------------CQGTAPQTQATAADAMD-------------------EDDADIVLLDAEDEEMGRSDNDPVSGTTTADQXXXXXXXXXXXX-----EAEASKSPEASPLFKRAARRLGRVHSVDITPTQLAAALTLLQLRPRVLAKRGLAPARFLRAGAAGGEATSSDAEEDVDKDSKDKKSTEEASAQPEPSGVRAAARPCPEGRGHCGHRGGHRHGPGGRVPPMGPVAVAFWKNGIELAPPQVRALLRALGVGPRRLVKVGLLDMNTLRSL 1244
            +LT TY D EGD+V FDT+AEL LA+RT S PLR+ V                  + P  +AT+A                        DDAD++++D   E    +   P  G+    Q                 EA A++ PE S L+++++ RL +   V +TPTQL   + L Q++ R L   GLAP R L       +A++S A  DVD       S++E   + +PS VR   R   +                 R      V      NG+EL   +V+ LL+AL V  RRLV++GLL    L  +
Sbjct:   13 QLTFTYKDNEGDEVRFDTNAELDLALRTSSVPLRIMVANPXXXXXXXXXXXXXXRSTPNPEATSAAPPSIPSTPGYAVASNVGSVVGGGDDADMIMVDMPGEAAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKSSMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSL-------DASASAAASDVD-------SSDEEGGENKPSAVRGLKRSKSQVA---------------RTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDM 297
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BLAST of mRNA_S-ischiensis_contig9.20544.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.410e-13
Identity = 102/355 (28.73%), Postives = 151/355 (42.54%), Query Frame = 3 
Query:  294 VIKTNMGENKRMVELGSASAAASFAELEKAIRLTYE--TSPNDKLTLTYTDAEGDDVTFDTDAELALAVRTCSSPLRVTVK----------CQGTAPQTQATAADAMD-------------------EDDADIVLLDAEDEEMGRSDNDPVSGTTTADQXXXXXXXXXXXX-----EAEASKSPEASPLFKRAARRLGRVHSVDITPTQLAAALTLLQLRPRVLAKRGLAPARFLRAGAAGGEATSSDAEEDVDKDSKDKKSTEEASAQPEPSGVRAAARPCPEGRGH--CGHRGGHRHGPGGRVPPMGPVAVAFWKNGIELAPPQVRALLRALGVGPRRLVKVGLLDMNTLRSL 1244
            ++K  +  + R++E+ +      F EL K +   Y        +LT TY D +GD+V FDT+AEL LA+RT S PLR+ V              + P  +AT+A                        D+ D++++D   E    +   P  G+    Q                 EA A++ PE S L+++A+ RL +   V +TPTQL   + L Q++ R L   GLAP R L A AA        A  D+D       S++E   + +PS VR   R   +  G     H                 V      NG+EL   +V+ LL+AL V  RRLV++GLL    L  +
Sbjct:    4 LVKIKLDGDLRIMEIPNPPR---FDELVKTVMDAYSMPAGVEQQLTFTYKDNDGDEVRFDTNAELDLAIRTSSVPLRIMVANPPXXXXXXXXSRSTPNPEATSAAPPSIPSTPGYAVASNVGSAVGGGDEPDMIMVDMPGEAAAAAAG-PSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKASMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDAAAA--------AASDLD-------SSDEEGGENKPSAVRGLKRSKSQVAGTIVADH-----------------VQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDM 322
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BLAST of mRNA_S-ischiensis_contig9.20544.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.380e-5
Identity = 59/170 (34.71%), Postives = 75/170 (44.12%), Query Frame = 3 
Query:  750 LFKRAARRLGRVHSV-DITPTQLAAALTLLQLRPRVLAKRGLAPARFLRAGAAGGEATSSDAEEDVDKDSKDKKSTEEASAQPEPSGVRAAARPCPEGRGHCGHRGGHRHGPGG---RVPPMGPVAVAFWKNGIELAPPQVRALLRALGVGPRRLVKVGLLDMNTLRSLR 1247
            L+K  AR L   H V  +T   L   + LL+LRP  L  +GLAP + L+  +A      +DA  D   DS     +E    Q + + V           G   H    +H   G         PV  A    GI L P + R LLRALGVGP RLVK+GL+    LR  R
Sbjct:   26 LYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSA------ADAHADTT-DSSGSSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSR 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFK7_ECTSI1.810e-1430.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ0_9PHAE1.410e-1328.73PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVV7_9PHAE5.380e-534.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1229375..1230714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1340
Cds size1062
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817384.6303103-UTR-S-ischiensis_contig9:1229374..12296521622817384.6303103-UTR-S-ischiensis_contig9:1229374..1229652Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1229375..1229652 +
1695741073.196931-UTR-S-ischiensis_contig9:1229374..12296521695741073.196931-UTR-S-ischiensis_contig9:1229374..1229652Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1229375..1229652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817384.64128-CDS-S-ischiensis_contig9:1229652..12307141622817384.64128-CDS-S-ischiensis_contig9:1229652..1230714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1229653..1230714 +
1695741073.209487-CDS-S-ischiensis_contig9:1229652..12307141695741073.209487-CDS-S-ischiensis_contig9:1229652..1230714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1229653..1230714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20544.1prot_S-ischiensis_contig9.20544.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1229653..1230714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20544.1

>prot_S-ischiensis_contig9.20544.1 ID=prot_S-ischiensis_contig9.20544.1|Name=mRNA_S-ischiensis_contig9.20544.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=354bp
MSNSIVIKTNMGENKRMVELGSASAAASFAELEKAIRLTYETSPNDKLTL
TYTDAEGDDVTFDTDAELALAVRTCSSPLRVTVKCQGTAPQTQATAADAM
DEDDADIVLLDAEDEEMGRSDNDPVSGTTTADQGDSDNGPVSAAAEAEAS
KSPEASPLFKRAARRLGRVHSVDITPTQLAAALTLLQLRPRVLAKRGLAP
ARFLRAGAAGGEATSSDAEEDVDKDSKDKKSTEEASAQPEPSGVRAAARP
CPEGRGHCGHRGGHRHGPGGRVPPMGPVAVAFWKNGIELAPPQVRALLRA
LGVGPRRLVKVGLLDMNTLRSLRAFRLGWQAAAHAHGARAGRHCGGRGGG
GGGG
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mRNA from alignment at S-ischiensis_contig9:1229375..1230714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20544.1 ID=mRNA_S-ischiensis_contig9.20544.1|Name=mRNA_S-ischiensis_contig9.20544.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1340bp|location=Sequence derived from alignment at S-ischiensis_contig9:1229375..1230714+ (Schizocladia ischiensis KU_0333)
GCCCTACTCACAACAATGATGAACACCAACAACAAGACCACCGACAACAA
GGTGAGCGCCCATGAGCTGAGAAGCTGAGGGGGAGGACGGGGGCTGGGTT
GAACACAGCACCGGTAGTCAGTTCCGTAGCAAGAGGGAGACTGCCTTGTC
GTCGCTCGAGTGAGAAGAGACGGTCCGCCGTCGTCGCCTCTCCGGCTATA
GTAGTCGTCGCCTTCACCAAGTCTTACGCGCCCTCGACATTTCGCCTCCC
GTCTTGGCTGCTTTCGTGCCCTTACCAGATGAGCAACTCTATCGTGATCA
AGACCAACATGGGCGAGAACAAGCGCATGGTGGAACTCGGGAGCGCCTCC
GCCGCCGCTTCCTTCGCGGAGCTCGAGAAGGCCATCCGCCTGACCTACGA
GACCTCCCCTAACGACAAGCTCACCCTCACCTACACGGACGCCGAGGGCG
ACGACGTGACGTTCGACACGGACGCCGAGCTTGCCCTTGCTGTCCGCACC
TGCAGCTCGCCGCTGCGGGTGACCGTCAAGTGCCAGGGGACAGCTCCGCA
GACCCAGGCCACTGCCGCCGATGCCATGGATGAGGACGACGCGGACATCG
TGCTCCTGGATGCCGAGGATGAGGAGATGGGCCGCTCCGATAACGACCCT
GTCTCCGGCACGACAACGGCGGACCAAGGTGACTCCGACAACGGACCTGT
CTCCGCCGCCGCCGAGGCCGAGGCTTCCAAGAGCCCCGAGGCGAGCCCGC
TGTTCAAGAGGGCTGCTCGGCGCCTGGGCCGGGTGCACAGCGTGGACATC
ACGCCGACGCAGCTGGCGGCGGCACTGACCCTCCTGCAGCTCCGCCCCCG
GGTGCTTGCGAAGCGGGGCCTTGCCCCCGCCCGCTTCCTCCGTGCCGGGG
CCGCAGGGGGGGAAGCCACGTCCTCTGACGCTGAGGAGGACGTCGACAAG
GACAGCAAGGACAAGAAGAGCACGGAGGAGGCGTCCGCGCAGCCCGAGCC
CTCGGGTGTGAGGGCCGCCGCCCGGCCTTGCCCCGAGGGGCGGGGTCACT
GTGGCCACCGGGGCGGCCACCGCCACGGCCCCGGCGGCCGCGTGCCCCCC
ATGGGGCCGGTGGCCGTCGCCTTCTGGAAGAACGGCATCGAGCTGGCGCC
CCCGCAGGTCCGTGCGCTGCTGCGCGCGCTCGGCGTGGGCCCGCGGCGGC
TGGTCAAGGTCGGCCTGCTGGACATGAACACGCTGAGGAGCCTCCGGGCG
TTCCGGCTCGGCTGGCAGGCGGCCGCCCATGCCCATGGGGCCCGGGCTGG
CCGCCACTGCGGGGGCCGCGGCGGCGGTGGTGGGGGTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1229375..1230714+

>mRNA_S-ischiensis_contig9.20544.1 ID=mRNA_S-ischiensis_contig9.20544.1|Name=mRNA_S-ischiensis_contig9.20544.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2124bp|location=Sequence derived from alignment at S-ischiensis_contig9:1229375..1230714+ (Schizocladia ischiensis KU_0333)
ATGAGCAACTCTATCGTGATCAAGACCAACATGGGCGAGAACAAGCGCAT
GGTGGAACTCGGGAGCGCCTCCGCCGCCGCTTCCTTCGCGGAGCTCGAGA
AGGCCATCCGCCTGACCTACGAGACCTCCCCTAACGACAAGCTCACCCTC
ACCTACACGGACGCCGAGGGCGACGACGTGACGTTCGACACGGACGCCGA
GCTTGCCCTTGCTGTCCGCACCTGCAGCTCGCCGCTGCGGGTGACCGTCA
AGTGCCAGGGGACAGCTCCGCAGACCCAGGCCACTGCCGCCGATGCCATG
GATGAGGACGACGCGGACATCGTGCTCCTGGATGCCGAGGATGAGGAGAT
GGGCCGCTCCGATAACGACCCTGTCTCCGGCACGACAACGGCGGACCAAG
GTGACTCCGACAACGGACCTGTCTCCGCCGCCGCCGAGGCCGAGGCTTCC
AAGAGCCCCGAGGCGAGCCCGCTGTTCAAGAGGGCTGCTCGGCGCCTGGG
CCGGGTGCACAGCGTGGACATCACGCCGACGCAGCTGGCGGCGGCACTGA
CCCTCCTGCAGCTCCGCCCCCGGGTGCTTGCGAAGCGGGGCCTTGCCCCC
GCCCGCTTCCTCCGTGCCGGGGCCGCAGGGGGGGAAGCCACGTCCTCTGA
CGCTGAGGAGGACGTCGACAAGGACAGCAAGGACAAGAAGAGCACGGAGG
AGGCGTCCGCGCAGCCCGAGCCCTCGGGTGTGAGGGCCGCCGCCCGGCCT
TGCCCCGAGGGGCGGGGTCACTGTGGCCACCGGGGCGGCCACCGCCACGG
CCCCGGCGGCCGCGTGCCCCCCATGGGGCCGGTGGCCGTCGCCTTCTGGA
AGAACGGCATCGAGCTGGCGCCCCCGCAGGTCCGTGCGCTGCTGCGCGCG
CTCGGCGTGGGCCCGCGGCGGCTGGTCAAGGTCGGCCTGCTGGACATGAA
CACGCTGAGGAGCCTCCGGGCGTTCCGGCTCGGCTGGCAGGCGGCCGCCC
ATGCCCATGGGGCCCGGGCTGGCCGCCACTGCGGGGGCCGCGGCGGCGGT
GGTGGGGGTGGGATGAGCAACTCTATCGTGATCAAGACCAACATGGGCGA
GAACAAGCGCATGGTGGAACTCGGGAGCGCCTCCGCCGCCGCTTCCTTCG
CGGAGCTCGAGAAGGCCATCCGCCTGACCTACGAGACCTCCCCTAACGAC
AAGCTCACCCTCACCTACACGGACGCCGAGGGCGACGACGTGACGTTCGA
CACGGACGCCGAGCTTGCCCTTGCTGTCCGCACCTGCAGCTCGCCGCTGC
GGGTGACCGTCAAGTGCCAGGGGACAGCTCCGCAGACCCAGGCCACTGCC
GCCGATGCCATGGATGAGGACGACGCGGACATCGTGCTCCTGGATGCCGA
GGATGAGGAGATGGGCCGCTCCGATAACGACCCTGTCTCCGGCACGACAA
CGGCGGACCAAGGTGACTCCGACAACGGACCTGTCTCCGCCGCCGCCGAG
GCCGAGGCTTCCAAGAGCCCCGAGGCGAGCCCGCTGTTCAAGAGGGCTGC
TCGGCGCCTGGGCCGGGTGCACAGCGTGGACATCACGCCGACGCAGCTGG
CGGCGGCACTGACCCTCCTGCAGCTCCGCCCCCGGGTGCTTGCGAAGCGG
GGCCTTGCCCCCGCCCGCTTCCTCCGTGCCGGGGCCGCAGGGGGGGAAGC
CACGTCCTCTGACGCTGAGGAGGACGTCGACAAGGACAGCAAGGACAAGA
AGAGCACGGAGGAGGCGTCCGCGCAGCCCGAGCCCTCGGGTGTGAGGGCC
GCCGCCCGGCCTTGCCCCGAGGGGCGGGGTCACTGTGGCCACCGGGGCGG
CCACCGCCACGGCCCCGGCGGCCGCGTGCCCCCCATGGGGCCGGTGGCCG
TCGCCTTCTGGAAGAACGGCATCGAGCTGGCGCCCCCGCAGGTCCGTGCG
CTGCTGCGCGCGCTCGGCGTGGGCCCGCGGCGGCTGGTCAAGGTCGGCCT
GCTGGACATGAACACGCTGAGGAGCCTCCGGGCGTTCCGGCTCGGCTGGC
AGGCGGCCGCCCATGCCCATGGGGCCCGGGCTGGCCGCCACTGCGGGGGC
CGCGGCGGCGGTGGTGGGGGTGGG
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