mRNA_S-ischiensis_contig11.2078.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2078.1
Unique NamemRNA_S-ischiensis_contig11.2078.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1001019..1001672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2078.1prot_S-ischiensis_contig11.2078.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1001262..1001642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.5176568-UTR-S-ischiensis_contig11:1001018..10012611622815582.5176568-UTR-S-ischiensis_contig11:1001018..1001261Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1001019..1001261 +
1695739784.2305615-UTR-S-ischiensis_contig11:1001018..10012611695739784.2305615-UTR-S-ischiensis_contig11:1001018..1001261Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1001019..1001261 +
1622815582.537789-UTR-S-ischiensis_contig11:1001642..10016721622815582.537789-UTR-S-ischiensis_contig11:1001642..1001672Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1001643..1001672 +
1695739784.2468233-UTR-S-ischiensis_contig11:1001642..10016721695739784.2468233-UTR-S-ischiensis_contig11:1001642..1001672Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1001643..1001672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.5277143-CDS-S-ischiensis_contig11:1001261..10016421622815582.5277143-CDS-S-ischiensis_contig11:1001261..1001642Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1001262..1001642 +
1695739784.2385778-CDS-S-ischiensis_contig11:1001261..10016421695739784.2385778-CDS-S-ischiensis_contig11:1001261..1001642Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1001262..1001642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2078.1

>prot_S-ischiensis_contig11.2078.1 ID=prot_S-ischiensis_contig11.2078.1|Name=mRNA_S-ischiensis_contig11.2078.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
MSRIPKRGWGHNVCTCARPVSAREQYEASTTQGSSFSFRWQGPQSRVNRG
KNGNSKGNGRHGDETTSCFVRNTAIPVCVAQQHEKQPRRPSFTPKPTYER
HGGQEAGESLTAHRSYAPCPCRQTGP*
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mRNA from alignment at S-ischiensis_contig11:1001019..1001672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2078.1 ID=mRNA_S-ischiensis_contig11.2078.1|Name=mRNA_S-ischiensis_contig11.2078.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig11:1001019..1001672+ (Schizocladia ischiensis KU_0333)
GGGCGCACAAACGTACATTAAAGGAGGTTGGACGTGAAACGGCGGGGGAA
AGGCTGCCATCAGCGCAGGACGGGGAGGGTCGCAGGCCTGGTTCTTGACC
CTAACAGATCCCCGGAAATGGTCAAATAGAAACGCTTCTGGTCACCGCCA
TCAAAGGGAAACGAAAAAACATTCGTATGTGCTTCCAGAGCCCGCGACTT
CTACGCCCAGTGGCAGGCATCTCCCCGCCTACATACATATGCAATGTCCC
GGATTCCAAAGCGTGGTTGGGGCCACAACGTGTGTACATGCGCGCGCCCG
GTGTCAGCGAGGGAACAGTATGAGGCCTCCACCACACAGGGCAGCTCGTT
CTCCTTCAGGTGGCAGGGGCCGCAAAGTCGCGTCAACCGTGGGAAGAACG
GAAATAGTAAAGGAAACGGCAGGCACGGTGACGAAACCACGTCTTGCTTC
GTGAGAAACACGGCCATTCCTGTTTGTGTCGCACAACAACACGAAAAACA
GCCAAGGCGCCCAAGTTTCACGCCCAAGCCCACTTATGAGCGGCATGGAG
GACAAGAAGCTGGGGAATCTCTTACAGCGCACAGATCATACGCACCTTGT
CCATGTCGACAAACAGGCCCGTGACGCCGTGCGCGCCCATGGTGCGCTTT
GCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1001019..1001672+

>mRNA_S-ischiensis_contig11.2078.1 ID=mRNA_S-ischiensis_contig11.2078.1|Name=mRNA_S-ischiensis_contig11.2078.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig11:1001019..1001672+ (Schizocladia ischiensis KU_0333)
ATGTCCCGGATTCCAAAGCGTGGTTGGGGCCACAACGTGTGTACATGCGC
GCGCCCGGTGTCAGCGAGGGAACAGTATGAGGCCTCCACCACACAGGGCA
GCTCGTTCTCCTTCAGGTGGCAGGGGCCGCAAAGTCGCGTCAACCGTGGG
AAGAACGGAAATAGTAAAGGAAACGGCAGGCACGGTGACGAAACCACGTC
TTGCTTCGTGAGAAACACGGCCATTCCTGTTTGTGTCGCACAACAACACG
AAAAACAGCCAAGGCGCCCAAGTTTCACGCCCAAGCCCACTTATGAGCGG
CATGGAGGACAAGAAGCTGGGGAATCTCTTACAGCGCACAGATCATACGC
ACCTTGTCCATGTCGACAAACAGGCCCGTGAATGTCCCGGATTCCAAAGC
GTGGTTGGGGCCACAACGTGTGTACATGCGCGCGCCCGGTGTCAGCGAGG
GAACAGTATGAGGCCTCCACCACACAGGGCAGCTCGTTCTCCTTCAGGTG
GCAGGGGCCGCAAAGTCGCGTCAACCGTGGGAAGAACGGAAATAGTAAAG
GAAACGGCAGGCACGGTGACGAAACCACGTCTTGCTTCGTGAGAAACACG
GCCATTCCTGTTTGTGTCGCACAACAACACGAAAAACAGCCAAGGCGCCC
AAGTTTCACGCCCAAGCCCACTTATGAGCGGCATGGAGGACAAGAAGCTG
GGGAATCTCTTACAGCGCACAGATCATACGCACCTTGTCCATGTCGACAA
ACAGGCCCGTGA
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