mRNA_S-ischiensis_contig9.20456.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20456.1
Unique NamemRNA_S-ischiensis_contig9.20456.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: A0A7J7QH65_9CHLO (DNA polymerase n=4 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7QH65_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.080e-7
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   37 AYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPL--PSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            +YE NV + LRFMVD+N+ GG WL++  G+      P G   R S   +EA   W A+  HAP+
Sbjct:  218 SYESNVLYALRFMVDTNMGGGQWLQIPAGTWKAATGPEGGAGRASWCQVEAHCVWSAIIAHAPE 281          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: A0A6A4XBW8_AMPAM (DNA polymerase n=5 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4XBW8_AMPAM)

HSP 1 Score: 56.2 bits (134), Expect = 5.100e-7
Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 1
Query:   19 GGGTCDAYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPL---PSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            GG    AYE NV F +RFM+D+NV G  W+ +  GS       PSG P  +S   +E  V+W     H P+
Sbjct:  220 GGWQYRAYESNVDFEIRFMIDTNVVGCNWITLPAGSWRRRAVDPSGGPQPVSLSQLEVDVAWNKFISHPPE 290          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: A0A087STN1_AUXPR (DNA polymerase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087STN1_AUXPR)

HSP 1 Score: 55.1 bits (131), Expect = 1.310e-6
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   40 YEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPLPSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            YE NV + LRFMVD+ + GG W+E+  G     P   PS+LS   +EA ++   L  HAP+
Sbjct:  227 YESNVLYALRFMVDTGIVGGNWVELPAGKYVLTPG--PSQLSHCQLEAHIAAADLVSHAPE 285          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: E9RHQ0_TENAI (DNA polymerase n=1 Tax=Tenodera aridifolia TaxID=186144 RepID=E9RHQ0_TENAI)

HSP 1 Score: 54.3 bits (129), Expect = 2.430e-6
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   16 PGGGTC-DAYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLS-PLPSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            P G  C  A+E NV F +RFMVD+++ G  W+E+  GS     PS + SR     +E  VSW AL  H P+
Sbjct:  162 PAGSHCFQAFESNVDFDIRFMVDTDIVGCSWVELPAGSWKLRSPSTYVSRCQ---IETDVSWEALISHQPE 229          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: E9GG78_DAPPU (DNA polymerase n=7 Tax=Daphnia TaxID=6668 RepID=E9GG78_DAPPU)

HSP 1 Score: 54.3 bits (129), Expect = 2.440e-6
Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   37 AYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPLPSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            AYE N+ F +R+MVD+++ G  W+E+  GS    P      ++R  +E  V+W  +  HAP+
Sbjct:  281 AYESNIDFEIRYMVDADIVGCNWIELPPGSWRLRPHSTVKPMTRCQIEVDVAWNKVISHAPE 342          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: A0A067QVI5_ZOONE (DNA polymerase n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QVI5_ZOONE)

HSP 1 Score: 53.5 bits (127), Expect = 4.550e-6
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 1
Query:   19 GGGTCDAYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPLPSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            G  +  A+E N+ F +RFMVD+ + G  W+E+  G  +  P+     +SR  +EA VSW  L  H P+
Sbjct:  225 GSHSFQAFESNIDFDIRFMVDTGLVGCSWVELPAGQWTMRPAAR--HVSRCQIEADVSWERLVSHTPE 290          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: E9RHN9_PHRIL (DNA polymerase n=1 Tax=Phraortes illepidus TaxID=590990 RepID=E9RHN9_PHRIL)

HSP 1 Score: 53.1 bits (126), Expect = 6.210e-6
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1
Query:   28 TCDAYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPLPSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            T  AYE N+ F +RFMVD+++ G  W+E+  G       GH   +SR  +E  VSW  +  H P+
Sbjct:  232 TYQAYETNIDFDIRFMVDADLVGCSWVELPVGKW--YLRGHNEHVSRCQLEVDVSWELMISHPPE 294          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: E9RHS0_9NEOP (DNA polymerase n=1 Tax=Panorpa takenouchii TaxID=115692 RepID=E9RHS0_9NEOP)

HSP 1 Score: 52.8 bits (125), Expect = 8.480e-6
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1
Query:   13 WPGGGTCD--AYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPLPS-GHPSRLSRYPMEAFVSWGALRGHAPD 222
            +P GG  D  A+E N+ F +RFMVD+NV G  W+E+  G+ +       P  +SR  +E  V+W     H P+
Sbjct:  217 YPEGGHHDYRAFESNIDFDIRFMVDTNVVGCSWIELPAGTWTIRNKLRDPKPISRCQLEVDVAWDQFIAHEPE 289          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: E9RHQ1_9NEOP (DNA polymerase n=2 Tax=Blattella TaxID=6972 RepID=E9RHQ1_9NEOP)

HSP 1 Score: 52.4 bits (124), Expect = 1.160e-5
Identity = 28/69 (40.58%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   19 GGGTCDAYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSP-LPSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            G     A+E N+ F +RFMVD+ V G  W+E+  G  +   PS     +SR  +EA VSW  L  HAP+
Sbjct:  173 GSHQFQAFESNIDFDIRFMVDTEVVGCSWVELPAGQWTKRAPSAF---ISRCQIEADVSWEELVSHAPE 238          
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Match: W6JP55_9MYRI (DNA polymerase n=1 Tax=Trigoniulus corallinus TaxID=1366115 RepID=W6JP55_9MYRI)

HSP 1 Score: 52.0 bits (123), Expect = 1.580e-5
Identity = 28/69 (40.58%), Postives = 35/69 (50.72%), Query Frame = 1
Query:   37 AYEDNVSFPLRFMVDSNVSGGGWLEVDQG-------SLSPLPSGHPSRLSRYPMEAFVSWGALRGHAPD 222
            AYE N+ F +RFMVD NV G  W+E+  G       S     S  P R+SR  +E  VS      HAP+
Sbjct:  220 AYESNIDFEIRFMVDYNVVGCSWIEIAAGHYKIRQASQESSTSSQPLRVSRCQLEVDVSVDHFISHAPE 288          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J7QH65_9CHLO1.080e-742.19DNA polymerase n=4 Tax=Scenedesmaceae TaxID=3086 R... [more]
A0A6A4XBW8_AMPAM5.100e-739.44DNA polymerase n=5 Tax=Amphibalanus amphitrite Tax... [more]
A0A087STN1_AUXPR1.310e-642.62DNA polymerase n=2 Tax=Auxenochlorella protothecoi... [more]
E9RHQ0_TENAI2.430e-642.25DNA polymerase n=1 Tax=Tenodera aridifolia TaxID=1... [more]
E9GG78_DAPPU2.440e-635.48DNA polymerase n=7 Tax=Daphnia TaxID=6668 RepID=E9... [more]
A0A067QVI5_ZOONE4.550e-636.76DNA polymerase n=2 Tax=Zootermopsis nevadensis Tax... [more]
E9RHN9_PHRIL6.210e-638.46DNA polymerase n=1 Tax=Phraortes illepidus TaxID=5... [more]
E9RHS0_9NEOP8.480e-636.99DNA polymerase n=1 Tax=Panorpa takenouchii TaxID=1... [more]
E9RHQ1_9NEOP1.160e-540.58DNA polymerase n=2 Tax=Blattella TaxID=6972 RepID=... [more]
W6JP55_9MYRI1.580e-540.58DNA polymerase n=1 Tax=Trigoniulus corallinus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:527513..528183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817378.5900044-CDS-S-ischiensis_contig9:527514..5277691622817378.5900044-CDS-S-ischiensis_contig9:527514..527769Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 527515..527769 -
1695741068.100097-CDS-S-ischiensis_contig9:527514..5277691695741068.100097-CDS-S-ischiensis_contig9:527514..527769Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 527515..527769 -
1622817378.6011672-CDS-S-ischiensis_contig9:528138..5281831622817378.6011672-CDS-S-ischiensis_contig9:528138..528183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 528139..528183 -
1695741068.1161299-CDS-S-ischiensis_contig9:528138..5281831695741068.1161299-CDS-S-ischiensis_contig9:528138..528183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 528139..528183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20456.1prot_S-ischiensis_contig9.20456.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 527515..528183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20456.1

>prot_S-ischiensis_contig9.20456.1 ID=prot_S-ischiensis_contig9.20456.1|Name=mRNA_S-ischiensis_contig9.20456.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
FSLRWPGGGTCDAYEDNVSFPLRFMVDSNVSGGGWLEVDQGSLSPLPSGH
PSRLSRYPMEAFVSWGALRGHAPDILAGAGEGSLGGQQCQQEEEDGDGGR
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mRNA from alignment at S-ischiensis_contig9:527513..528183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20456.1 ID=mRNA_S-ischiensis_contig9.20456.1|Name=mRNA_S-ischiensis_contig9.20456.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=671bp|location=Sequence derived from alignment at S-ischiensis_contig9:527513..528183- (Schizocladia ischiensis KU_0333)
TTTTCGCTAAGGTGGCCCGGGGGAGGCACCTGCGACGCGTACGAGGTGAG TAGAGTTCTGTATTGAACAAAACATTGATTGAGTATTGATTGAAAATCGC TGGAAATATTTGAATAACTGATATTGACGATTTTCGGCGTCAAGATGGAA CTCAAGAGGTGAGCTAGCAATGTGGAGTTTTTTCTAGTGTGGTGGGGGCG TCCATGGACCTCCCAAGCCCTCTTTTGGTGTAATCGTACAAGCTATTGCT TGGTGCTGCACTTCTTGCTCGAAGCATACGATTGCCCTCACACGCTTCAT GCTCGAGTATAGGCATATCCTGGAGGTATTCATATGTCTCGCGCACATCC AAGTGCTTGAGAACATACTTACAGTTGCCCTCACTCCCTCGCCCCCCCCT CCCTTTCCAACCAGGACAATGTGTCGTTCCCCCTCCGCTTCATGGTGGAC TCCAACGTCAGCGGTGGCGGCTGGCTGGAGGTTGATCAAGGGTCCCTCTC CCCCCTCCCGAGCGGCCACCCCTCCCGCCTGTCGAGGTACCCCATGGAGG CGTTTGTCAGCTGGGGCGCCCTGCGGGGGCACGCCCCCGACATCTTGGCC GGGGCAGGCGAGGGCAGTCTTGGCGGTCAGCAGTGCCAGCAGGAGGAGGA GGACGGGGACGGGGGCCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:527513..528183-

>mRNA_S-ischiensis_contig9.20456.1 ID=mRNA_S-ischiensis_contig9.20456.1|Name=mRNA_S-ischiensis_contig9.20456.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig9:527513..528183- (Schizocladia ischiensis KU_0333)
TTTTCGCTAAGGTGGCCCGGGGGAGGCACCTGCGACGCGTACGAGTTTTC
GCTAAGGTGGCCCGGGGGAGGCACCTGCGACGCGTACGAGGACAATGTGT
CGTTCCCCCTCCGCTTCATGGTGGACTCCAACGTCAGCGGTGGCGGCTGG
CTGGAGGTTGATCAAGGGTCCCTCTCCCCCCTCCCGAGCGGCCACCCCTC
CCGCCTGTCGAGGTACCCCATGGAGGCGTTTGTCAGCTGGGGCGCCCTGC
GGGGGCACGCCCCCGACATCTTGGCCGGGGCAGGCGAGGGCAGTCTTGGC
GGTCAGCAGTGCCAGCAGGAGGAGGAGGACGGGGACGGGGGCCGGGACAA
TGTGTCGTTCCCCCTCCGCTTCATGGTGGACTCCAACGTCAGCGGTGGCG
GCTGGCTGGAGGTTGATCAAGGGTCCCTCTCCCCCCTCCCGAGCGGCCAC
CCCTCCCGCCTGTCGAGGTACCCCATGGAGGCGTTTGTCAGCTGGGGCGC
CCTGCGGGGGCACGCCCCCGACATCTTGGCCGGGGCAGGCGAGGGCAGTC
TTGGCGGTCAGCAGTGCCAGCAGGAGGAGGAGGACGGGGACGGGGGCCGG
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