mRNA_S-ischiensis_contig9.20442.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI) HSP 1 Score: 114 bits (285), Expect = 6.340e-26 Identity = 74/153 (48.37%), Postives = 85/153 (55.56%), Query Frame = 1
Query: 118 GTGGHHPERVLLEQAHGKKFLVRMAARGPGPWALAVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDILCRTLDPSFLH 576
G+GG E+ L QAH ++FL M+A G W A SA V V VLSGR NA C +E PGRHA P S G G L+ E CAVN+VAVGALYA QWS+ RVAVVD A GT DILCRTLDP+FL+
Sbjct: 1305 GSGGD--EKRYLAQAHTQEFLAHMSAMGRQEWGAASASAACVVRGVSAVLSGRCTNALCLLENPGRHA--------------PSGGYSVGHGCGVPKLK-EGACCAVNSVAVGALYAHMQWSVGRVAVVDFGTHLATGTADILCRTLDPAFLY 1440
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: A0A7S2SRP9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRP9_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.280e-11 Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 229 SARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQW--SLCRVAVVDMDALPAAGTQDILCRTLDP 564
+A +V EAVD V SG+ARNAFCA+ PG HA LRG++ E+ A G +G C +NNVA+GA YA+H W ++ +VA+VD D GT+D++ R L P
Sbjct: 51 AAGVVCEAVDRVCSGKARNAFCAIRPPGHHAG-------LRGVV--ESGDDAHGSSGF---------CLLNNVAIGAAYAKHMWRGTVQKVAIVDFDVHHGNGTEDVV-RNLVP 145
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: H3KEJ4_9BURK (Histone deacetylase family protein n=1 Tax=Sutterella parvirubra YIT 11816 TaxID=762967 RepID=H3KEJ4_9BURK) HSP 1 Score: 69.7 bits (169), Expect = 9.930e-11 Identity = 51/127 (40.16%), Postives = 60/127 (47.24%), Query Frame = 1
Query: 199 GPGPWALAVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDILCRTLDPSFLHI 579
GPG + A+ S V AVD V S RNAFCAV PG HA A A GG C +NNVAVGALYAR +W + RVAV+D D GT++IL FL +
Sbjct: 101 GPGTFDAAMRSVGAVVAAVDAVFSRTCRNAFCAVRPPGHHAGRARA-----------------GGF-----------CFLNNVAVGALYARARWGVERVAVLDFDVHHGDGTEEILAGREGVKFLSL 199
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: A0A6N6VHY3_9HYPH (Histone deacetylase family protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VHY3_9HYPH) HSP 1 Score: 68.9 bits (167), Expect = 1.730e-10 Identity = 49/127 (38.58%), Postives = 59/127 (46.46%), Query Frame = 1
Query: 202 PGPWALAVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDILCRTLDPSFLHIS 582
PG A+ +A V AVD V+SGR RNAFCA+ PG HA+ R G C NNVA+GAL+ARH L R+AVVD D GTQ C DP+ + S
Sbjct: 87 PGSVEAALRAAGAVTFAVDEVMSGRVRNAFCAIRPPGHHAEP----DRAMGF------------------------CFFNNVAIGALHARHVHGLSRIAVVDFDVHHGNGTQ--ACFETDPNLFYAS 183
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: UPI001C9E5F87 (histone deacetylase family protein n=1 Tax=Chitinolyticbacter meiyuanensis TaxID=682798 RepID=UPI001C9E5F87) HSP 1 Score: 68.9 bits (167), Expect = 1.750e-10 Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 1
Query: 250 AVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDILCR 552
AVDLV+SGRARNAFCAV PG HA+ H + G C +NNVAV +A Q + RVAVVD D GT+DI CR
Sbjct: 108 AVDLVMSGRARNAFCAVRPPGHHAE----HDKAMGF------------------------CLINNVAVAVAHAIEQHGMQRVAVVDFDVHHGNGTEDIFCR 180
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: A0A2U1VDK3_9PROT (Acetoin utilization protein n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1VDK3_9PROT) HSP 1 Score: 67.0 bits (162), Expect = 8.350e-10 Identity = 52/121 (42.98%), Postives = 59/121 (48.76%), Query Frame = 1
Query: 220 AVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDILCRTLDPSFLHIS 582
A+ +A V AVDLV SGR+RNAFCAV PG HA+ A A G C NNVAVGAL+AR L RVAV+D D GTQDI DP L+ S
Sbjct: 93 ALRAAGAVCAAVDLVASGRSRNAFCAVRPPGHHAERAKA----MGF------------------------CLFNNVAVGALHARAVHGLQRVAVMDFDVHHGNGTQDIFQD--DPDLLYCS 183
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: Q02CA3_SOLUE (Histone deacetylase superfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) TaxID=234267 RepID=Q02CA3_SOLUE) HSP 1 Score: 66.2 bits (160), Expect = 1.590e-9 Identity = 46/117 (39.32%), Postives = 59/117 (50.43%), Query Frame = 1
Query: 202 PGPWALAVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDILCR 552
P W +AV ++ V AVD VL+G ARNAFCAV PG HA++A RG+ C +NNVA+ A YA+ + + RVA+VD D GTQDI R
Sbjct: 88 PNSWDVAVRASGGVLNAVDAVLTGAARNAFCAVRPPGHHANAA------RGMGF----------------------CLLNNVAIAARYAQRRHGIERVAIVDWDVHHGNGTQDIFYR 176
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: A0A840SKM8_9RHOB (Acetoin utilization deacetylase AcuC-like enzyme n=1 Tax=Amaricoccus macauensis TaxID=57001 RepID=A0A840SKM8_9RHOB) HSP 1 Score: 66.2 bits (160), Expect = 1.590e-9 Identity = 44/116 (37.93%), Postives = 55/116 (47.41%), Query Frame = 1
Query: 199 GPGPWALAVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDIL 546
GPG A A + AVDLV+SG RNAFCAV PG HA++ +R G C VA+GAL+A H+ L RVA++D D GTQD+L
Sbjct: 86 GPGTIRAARRGAGAICRAVDLVMSGEVRNAFCAVRPPGHHAET----ERAMGF------------------------CYFGTVAIGALHAIHEHGLSRVAIMDFDVHHGNGTQDLL 173
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: A0A3M1JND3_9PROT (Histone deacetylase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JND3_9PROT) HSP 1 Score: 65.9 bits (159), Expect = 2.130e-9 Identity = 51/150 (34.00%), Postives = 65/150 (43.33%), Query Frame = 1
Query: 139 ERVLLEQAHGKKFLVR----MAARG-----------PGPWALAVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDI 543
++ LE+ H K ++ R M A G P A+ +A V AVD V++G RNAFCAV PG HA+ R G C NNVAVGAL+A H++ L R AVVD D GTQ +
Sbjct: 51 DKAALERVHAKTYVRRVLSSMPAEGYRRLDPDTVVCPDSGEAALRAAGAVVAAVDAVMAGEVRNAFCAVRPPGHHAEP----DRAMGF------------------------CLFNNVAVGALHAVHRYGLARAAVVDFDVHHGNGTQTV 172
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Match: A0A7S1I0E1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I0E1_9EUGL) HSP 1 Score: 65.5 bits (158), Expect = 3.660e-9 Identity = 48/125 (38.40%), Postives = 58/125 (46.40%), Query Frame = 1
Query: 202 PGPWALAVGSARLVAEAVDLVLSGRARNAFCAVETPGRHADSATAHQRLRGLLAPEAAASAKGGAGTGSLEAEAWPCAVNNVAVGALYARHQWSLCRVAVVDMDALPAAGTQDILCRTLDPSFLH 576
PG W A+ +A A+AVDLVL G+ARNAFCAV PG HA A RG+ C NN+AV A YA+ + +V +VD D GTQD DPS L
Sbjct: 128 PGTWKAALRAAGAAADAVDLVLGGQARNAFCAVRPPGHHATPA------RGMGF----------------------CVFNNIAVAARYAQRHHGVEKVLIVDWDYHHGNGTQDAFYE--DPSVLQ 222 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20442.1 >prot_S-ischiensis_contig9.20442.1 ID=prot_S-ischiensis_contig9.20442.1|Name=mRNA_S-ischiensis_contig9.20442.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=194bp GGGGGGEATSAEVAPPPPPPSATPPPTPPCSVGGPGGGTGTGGHHPERVLback to top mRNA from alignment at S-ischiensis_contig9:438529..440249+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20442.1 ID=mRNA_S-ischiensis_contig9.20442.1|Name=mRNA_S-ischiensis_contig9.20442.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1721bp|location=Sequence derived from alignment at S-ischiensis_contig9:438529..440249+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:438529..440249+ >mRNA_S-ischiensis_contig9.20442.1 ID=mRNA_S-ischiensis_contig9.20442.1|Name=mRNA_S-ischiensis_contig9.20442.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1164bp|location=Sequence derived from alignment at S-ischiensis_contig9:438529..440249+ (Schizocladia ischiensis KU_0333)back to top |