prot_S-ischiensis_contig9.20405.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20405.1
Unique Nameprot_S-ischiensis_contig9.20405.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length223
Homology
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BLAST of mRNA_S-ischiensis_contig9.20405.1 vs. uniprot
Match: D8LN63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN63_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.910e-28
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:   82 LEEVPDDMVDTIFTISDPETGSTIDCYAERFACIGGERYLVAYPKDDAVAIAFQEQGEIAPVPLDDVLMDSLFQVVEE---ELAPSGLTILRTPGTLTMRGLGEVESPYED 189
            LEEV D++      +  P+TG  + CYAER A +GGERYLVA+PKD AVAIAF E GE++PVP DD +MD LF + E    +L P G+T+LRTP TLT++GL E+    +D
Sbjct:   11 LEEVSDELASKPVALGCPKTGKELVCYAERIAVVGGERYLVAFPKDPAVAIAFDENGEVSPVPNDDPIMDELFPLAEACVADLGP-GVTLLRTPTTLTVQGLNELVDEAKD 120
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BLAST of mRNA_S-ischiensis_contig9.20405.1 vs. uniprot
Match: D8LHY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.070e-12
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 0 
Query:   82 LEEVPDDMVDTIFTISDPETGST---IDCYAERFACIGGERYLVAYPKDDAVAIAF-QEQGEIAPVPLDDVLMDSLFQVVEEELAPSGLTILRTPGTLTMRG 179
            LE VP+D +D  +       G T   I+CYA+RFA +GG RY++ +P D AV++   +++G +  VPLD  LM+ L   ++ EL    + +  TP TLT++G
Sbjct:  124 LETVPEDKLDQAYVFRQERPGQTPRVIECYADRFAVVGGRRYMIGHPCDWAVSVCTPKDEGNVEAVPLDSELMEELLPGLQRELEAEDVHLFVTPITLTLQG 225
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN63_ECTSI3.910e-2853.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LHY2_ECTSI1.070e-1238.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:229267..230877 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20405.1mRNA_S-ischiensis_contig9.20405.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 229267..230877 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20405.1 ID=prot_S-ischiensis_contig9.20405.1|Name=mRNA_S-ischiensis_contig9.20405.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=223bp
RSCILRCRFAPDMATCVPFVAVLAILALSGAWAFVPVPPSWHAPVREGAA
YAKTCGHPGWTSGWVGASGQGVRGVPLRAQGLEEVPDDMVDTIFTISDPE
TGSTIDCYAERFACIGGERYLVAYPKDDAVAIAFQEQGEIAPVPLDDVLM
DSLFQVVEEELAPSGLTILRTPGTLTMRGLGEVESPYEDADNWEDGEAEA
AVGQEIVAGSAGSAVDVSLVEEE
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