mRNA_S-ischiensis_contig9.20391.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20391.1
Unique NamemRNA_S-ischiensis_contig9.20391.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.080e-59
Identity = 118/207 (57.00%), Postives = 135/207 (65.22%), Query Frame = 3
Query:  339 QLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGA-GFGTTPPWMDSRWEVGPADVAGRRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            Q++GQRLVV V+ WD    +P GHYV SLGPVGE+SSE AALLVE  A+F PFSF+ALA LP                        P T +   R   GFG  P W DS W V  +DVAGRR+LR  R  SVDPPGCQDIDDAMH++  P G      + E+GVHIADVTRFV+A +PLDREARAR TTVYL H R+DMLP LLSSD
Sbjct:  456 QISGQRLVVMVDGWDVGHVFPFGHYVTSLGPVGEVSSEAAALLVECEASFQPFSFNALASLP------LVPNPPKESQKPRDALLPPATLAERERPEDGFGKAPRWQDSGWRVQESDVAGRRDLRKERAMSVDPPGCQDIDDAMHVKRKPNG------KLEIGVHIADVTRFVEADSPLDREARARATTVYLVHRRIDMLPALLSSD 650          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A836CJZ0_9STRA (DIS3-like exonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ0_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.660e-50
Identity = 107/210 (50.95%), Postives = 127/210 (60.48%), Query Frame = 3
Query:  336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRH--LRVFSVDPPGCQDIDDAMHIRELPRGSGSGG-RRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            ++L GQRL+V+V+ W+    +P+GHYVR+LGP G+  +E+AALL+E  AAF PFS  ALACLP                                RG        W DS W V   D   R++LR    RVFSVDPPGCQDIDDAMH+RE+    GSG  RR EVGVHIADV RFV  G+PLDREAR RGTT YL+H R DMLP LL+ D
Sbjct:   16 SRLMGQRLLVQVDAWERGMRFPSGHYVRALGPAGDAETEVAALLLEHDAAFPPFSARALACLPR-------------------------------RG--------WRDSGWTVPEEDSTARKDLRGGGYRVFSVDPPGCQDIDDAMHVREI---GGSGMVRRLEVGVHIADVARFVAHGSPLDREARQRGTTTYLSHRRFDMLPALLAGD 183          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A6H5JSW4_9PHAE (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW4_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 8.460e-49
Identity = 111/214 (51.87%), Postives = 129/214 (60.28%), Query Frame = 3
Query:  324 VLVHTQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAG---RRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            + + T+   QRLVV V+ WD    +P+GHYV SLGPVGE+SSE AALLVE  A+F PFSF+ALA LP                          T S   R A     PP   +  E  P D  G   RR+LR  R  SVDPPGCQDIDDAMH++  P G      + E+GVHIADVTRFV+A +PLDREARAR TTVYL H R+DMLP LLSSD
Sbjct:   51 IRIKTRQLAQRLVVTVDGWDVGQVFPSGHYVTSLGPVGEVSSEAAALLVECEASFQPFSFNALASLPLVPNPPKVRRKRPVFS----------TESQKPRDA---LLPPATLAERE-RPEDGFGKAPRRDLRRERAMSVDPPGCQDIDDAMHVKRKPNG------KLEIGVHIADVTRFVEADSPLDREARARATTVYLVHRRIDMLPALLSSD 244          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A453J2J3_AEGTS (RNB domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J2J3_AEGTS)

HSP 1 Score: 154 bits (390), Expect = 2.810e-41
Identity = 87/207 (42.03%), Postives = 110/207 (53.14%), Query Frame = 3
Query:  342 LTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAG--RRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            L  +R++V V+ WD  S YP+GHYVR++G +G+  +E   +L+E+     PFS   LACLP                                               W + P DVA   R++LRH+RVFSVDPPGC+DIDDA+H   LP G+      FEVGVHIADVT FV  GTPLD EA  R T+VYL   R+DMLP  L+ D
Sbjct:  128 LLNKRIIVAVDSWDVMSRYPSGHYVRTIGDIGDKETETEVVLIENDINTRPFSTQVLACLPPLP--------------------------------------------WTLSPEDVANPNRQDLRHVRVFSVDPPGCRDIDDALHCTPLPNGN------FEVGVHIADVTNFVHPGTPLDEEASQRATSVYLVGQRIDMLPKPLTED 284          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A1V9YYU9_9STRA (DIS3-like exonuclease 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYU9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.090e-40
Identity = 97/208 (46.63%), Postives = 115/208 (55.29%), Query Frame = 3
Query:  336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRHL-RVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            T+L   RL V ++ W  DSFYP GHYV+ LGPVG+L +E+AALLV+       FS  ALACLP                             P+TR              W +  A++A RR+LR   RVFSVDPPGCQDIDDAM +R LP G       +E+GVHIADV  FV A + LDR+AR R TTVYL   R DMLP LLS D
Sbjct:  386 TELVDHRLTVAIDAWPLDSFYPAGHYVQVLGPVGDLETEVAALLVQHATHAARFSERALACLPDVGDVDWDAVAICDTSRRPRV--------PLTR-------------EWCMPAAEIAARRDLRASHRVFSVDPPGCQDIDDAMSVRRLPNG------HWELGVHIADVGYFVAADSALDRDARHRATTVYLVDRRFDMLPVLLSGD 566          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A2V0P7U5_9CHLO (Exosome complex exonuclease n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7U5_9CHLO)

HSP 1 Score: 161 bits (407), Expect = 1.390e-40
Identity = 91/207 (43.96%), Postives = 112/207 (54.11%), Query Frame = 3
Query:  342 LTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVA--GRRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            L  QR+VV V+ WDSDS YP+GHYVRSLG +G   +E   LL+E+     PF+ +   C+P                                            +  WEV  AD+A   R +LRHL V SVDPPGC+DIDDA+H+RELP G+       EVGVHIADVT F+K GTP+D EA AR TT YL   R+DMLP  L+ D
Sbjct:  435 LMSQRIVVAVDGWDSDSAYPHGHYVRSLGEIGTKDTETEVLLIENDINTAPFAPAVYECVP--------------------------------------------EQPWEVAAADLADPNREDLRHLPVCSVDPPGCRDIDDALHVRELPNGN------LEVGVHIADVTHFLKPGTPMDDEAAARATTTYLVGRRIDMLPKALTED 591          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A1W0A8G9_9STRA (DIS3-like exonuclease 1 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8G9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.460e-40
Identity = 95/216 (43.98%), Postives = 120/216 (55.56%), Query Frame = 3
Query:  312 LRNPVLVHTQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRHL-RVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            +R   L   +L  QRL + ++ W  DSFYP GHYV+ LGPVG L +E+ ALLV+       FS SALACLP                             P+TR              W++   ++  RR+LR+  RVFSVDPPGCQDIDDAM I +LP G+      +E+GVHIADV+ FV+A + LD+EA+ R TTVYL   R DMLP LLS D
Sbjct:  383 VRMRTLNAAELVDQRLTILIDDWALDSFYPAGHYVQILGPVGNLETEIQALLVQHAVHASRFSESALACLPDVNDVKWDDVAICDTSRRPRV--------PLTR-------------EWQIPTDELQNRRDLRNTHRVFSVDPPGCQDIDDAMSITQLPNGN------YELGVHIADVSHFVEADSSLDKEAQHRATTVYLVDRRYDMLPVLLSGD 571          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A0X3PRS6_SCHSO (DIS3-like exonuclease 1 n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PRS6_SCHSO)

HSP 1 Score: 160 bits (405), Expect = 2.400e-40
Identity = 92/218 (42.20%), Postives = 119/218 (54.59%), Query Frame = 3
Query:  336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRH-----------LRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            TQL  +R +VR++RWD++S YP+GH+V+SLGP+G+L +E   +LVE G    PF+ + L  L S                                           D +W+V P +VA RR+LR              VFS+DPPGCQD+DDA+ +R LP  +  G RR ++GVHIADVT FVKAG  LD EAR R T+VYL   R DMLP LLS D
Sbjct:  442 TQLAKERFIVRIDRWDTNSNYPHGHFVQSLGPIGDLETETQTILVEHGLLHRPFTDAQLQELKSYA----------------------------------------SDRKWKVDPKEVANRRDLRPPSVSGNKKSEGTLVFSIDPPGCQDVDDALSVRWLP-ANAEGRRRIQLGVHIADVTYFVKAGGNLDAEARRRSTSVYLADRRYDMLPGLLSGD 618          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A183TB91_SCHSO (DIS3-like exonuclease 1 n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TB91_SCHSO)

HSP 1 Score: 160 bits (405), Expect = 2.760e-40
Identity = 92/218 (42.20%), Postives = 119/218 (54.59%), Query Frame = 3
Query:  336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRH-----------LRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            TQL  +R +VR++RWD++S YP+GH+V+SLGP+G+L +E   +LVE G    PF+ + L  L S                                           D +W+V P +VA RR+LR              VFS+DPPGCQD+DDA+ +R LP  +  G RR ++GVHIADVT FVKAG  LD EAR R T+VYL   R DMLP LLS D
Sbjct:  467 TQLAKERFIVRIDRWDTNSNYPHGHFVQSLGPIGDLETETQTILVEHGLLHRPFTDAQLQELKSYA----------------------------------------SDRKWKVDPKEVANRRDLRPPSVSGNKKSEGTLVFSIDPPGCQDVDDALSVRWLP-ANAEGRRRIQLGVHIADVTYFVKAGGNLDAEARRRSTSVYLADRRYDMLPGLLSGD 643          
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A6P4A3C1_ZIZJJ (exosome complex exonuclease RRP44 homolog A isoform X2 n=15 Tax=rosids TaxID=71275 RepID=A0A6P4A3C1_ZIZJJ)

HSP 1 Score: 158 bits (400), Expect = 1.130e-39
Identity = 88/207 (42.51%), Postives = 111/207 (53.62%), Query Frame = 3
Query:  342 LTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAG--RRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
            L  +R+VV V+ WD  S YP+GHY+R++G +G+  +E   +L+E+     PFS   LACLP                                               W V P D+    R++LRHLRVFSVDPPGC+DIDDA+H   LP G+      FEVGVHIADVT FV+ GTPLD EA  RGT+VYL   R+DMLP  L+ D
Sbjct:  395 LLDKRIVVAVDSWDRLSRYPSGHYIRTIGEIGDRDTETEVVLIENDINSRPFSSQVLACLPPLP--------------------------------------------WSVSPEDLTNPIRQDLRHLRVFSVDPPGCKDIDDALHCTSLPNGN------FEVGVHIADVTNFVQPGTPLDEEATQRGTSVYLVERRIDMLPKPLTED 551          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN43_ECTSI1.080e-5957.00DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A836CJZ0_9STRA1.660e-5050.95DIS3-like exonuclease 1 n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JSW4_9PHAE8.460e-4951.87DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCA... [more]
A0A453J2J3_AEGTS2.810e-4142.03RNB domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A1V9YYU9_9STRA1.090e-4046.63DIS3-like exonuclease 1 n=1 Tax=Achlya hypogyna Ta... [more]
A0A2V0P7U5_9CHLO1.390e-4043.96Exosome complex exonuclease n=1 Tax=Raphidocelis s... [more]
A0A1W0A8G9_9STRA1.460e-4043.98DIS3-like exonuclease 1 (Fragment) n=1 Tax=Thraust... [more]
A0A0X3PRS6_SCHSO2.400e-4042.20DIS3-like exonuclease 1 n=1 Tax=Schistocephalus so... [more]
A0A183TB91_SCHSO2.760e-4042.20DIS3-like exonuclease 1 n=2 Tax=Schistocephalus so... [more]
A0A6P4A3C1_ZIZJJ1.130e-3942.51exosome complex exonuclease RRP44 homolog A isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:176933..180856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog2880.D8LN43
Preferred nameDIS3L
KEGG koko:K12585,ko:K18681
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
GOsGO:0000175,GO:0000177,GO:0000178,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0019899,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size956
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20391.1prot_S-ischiensis_contig9.20391.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 179562..180856 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.2037592-UTR-S-ischiensis_contig9:176932..1773721622817375.2037592-UTR-S-ischiensis_contig9:176932..177372Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 176933..177372 +
1695741065.5288253-UTR-S-ischiensis_contig9:176932..1773721695741065.5288253-UTR-S-ischiensis_contig9:176932..177372Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 176933..177372 +
1622817375.2161586-UTR-S-ischiensis_contig9:177844..1779491622817375.2161586-UTR-S-ischiensis_contig9:177844..177949Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 177845..177949 +
1695741065.545467-UTR-S-ischiensis_contig9:177844..1779491695741065.545467-UTR-S-ischiensis_contig9:177844..177949Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 177845..177949 +
1622817375.226911-UTR-S-ischiensis_contig9:179453..1795611622817375.226911-UTR-S-ischiensis_contig9:179453..179561Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 179454..179561 +
1695741065.5576625-UTR-S-ischiensis_contig9:179453..1795611695741065.5576625-UTR-S-ischiensis_contig9:179453..179561Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 179454..179561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.2393668-CDS-S-ischiensis_contig9:179561..1796171622817375.2393668-CDS-S-ischiensis_contig9:179561..179617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 179562..179617 +
1695741065.569578-CDS-S-ischiensis_contig9:179561..1796171695741065.569578-CDS-S-ischiensis_contig9:179561..179617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 179562..179617 +
1622817375.249861-CDS-S-ischiensis_contig9:180130..1802391622817375.249861-CDS-S-ischiensis_contig9:180130..180239Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 180131..180239 +
1695741065.5831735-CDS-S-ischiensis_contig9:180130..1802391695741065.5831735-CDS-S-ischiensis_contig9:180130..180239Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 180131..180239 +
1622817375.2597952-CDS-S-ischiensis_contig9:180718..1808561622817375.2597952-CDS-S-ischiensis_contig9:180718..180856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 180719..180856 +
1695741065.595892-CDS-S-ischiensis_contig9:180718..1808561695741065.595892-CDS-S-ischiensis_contig9:180718..180856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 180719..180856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20391.1

>prot_S-ischiensis_contig9.20391.1 ID=prot_S-ischiensis_contig9.20391.1|Name=mRNA_S-ischiensis_contig9.20391.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
MDSRWEVGPADVAGRRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSG
GRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSS
D
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mRNA from alignment at S-ischiensis_contig9:176933..180856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20391.1 ID=mRNA_S-ischiensis_contig9.20391.1|Name=mRNA_S-ischiensis_contig9.20391.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3924bp|location=Sequence derived from alignment at S-ischiensis_contig9:176933..180856+ (Schizocladia ischiensis KU_0333)
AGCAACAGTAGAGCGGTACTTTGAACTACTGGAGTACAGTGTCACTACTG TATATCTACTATTCTGTTCTGTTCTGGGCATCTACTGTACTGGTGTACTG TAGTTCTGCCTTCCTTGCATTGTGCCGCGTGTCTGCTGTTCTGTTGCAAT GCAGCACAGTTTGTCCAAGTACTGTACTCGAGTACATACAAACTGTGCAT TGATACAACGAGTCAGTGTCCTCCCCAGTGTTTGAGAGTACAATAGCAAC GGGTTGCTGTACTACAGACTACTGTAGACTGGTGTACTGCAGGAACTGAC CAGCAACGGGTTTGCGCAACCCTGTACTCGTACACACTCAGCTGACGGGG CAGCGTCTGGTGGTGCGCGTGGAGCGCTGGGACTCTGACTCCTTTTACCC CAACGGGCACTACGTGCGCTCCCTGGGACCTGTGGGAGAGGTGAGTGCCC CCCCCCCCCCCCCTCCCCGGGCCTGCGTGCTATGAAACAGCAAGACGTGT GAATGAAGGTCACTTGTATGCTTGTATCAGTGAATCAAGGTCACTTGTGT GCTGCTGCTGCTGCTGATGATGATGATGATGATTGTGACTATGACGATCA CGCTGACTCCATATCGACAATGAAAATGACGATGTGGTGGTGGTGCTGGT GGTGCTGCTGTTGCTGTTGCTGCTGCTGCGGCCTCTGATGATGATGATAA TTGTGATTATGACGATGACGATGACGATGACGATATCGACGATAAAAATG ATGTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGATGATGATGATGGTG ATGATAATGGGCGATATCGACAATGAAAATGATGATGATGTGGTGGTGGT GGTGCTGCTGCTGCTGCTGCTGCTGCGGCTGCGGCTGCTGCTGATGTTGA TCGTGTTGGCAGCTGTCGAGCGAGCTGGCAGCCCTGCTGGTGGAGTCTGG AGCGGCCTTCGACCCGTTTAGCTTCAGTGCACTGGCGTGCCTGCCCAGTG TGCCAAACCCCCCTGAGGTACGATATAGCTACTCCGTACCTACAACATGC TAAGTGCAATATTGTATGTGTTGTGGTGTACTGTACCATGCTCCCGTGTA AAGGTGCTCGAGTATATAGGTAAGTACATGTACTTGAAAGTTCAAGTTCT TCAGAGTACCGGTATTCCTATATACTTCGTACTACGTAGGACAAACCAGA CTGCAAAAGTGCTGTACTCAGTTGCTGTAGAGCTCGAGTGAACTCGTATG TAGTGTGGTACTTCCAAGTACTTCCGGAAGTACTCTACTGTACAGCAGTT CTAATGCTGTACTCATACTCGTACTCAGTCCTGTAAAGTAGGCACAGGCA CAGGTGACGGGCGCTGGAGTTGAAAACGGCGCATGCCTGAGGGATTCATG CTTATCTTTTTTTACTACGTATCTAATCATGGGCTTAGTTGTCTTGCGGC AGAACCTCTTAGCTACTTGGGTATCCTGAAGCTCAATGCGCTGACTACTT GAGTTCTCGAAACTCAAGTCTCCCCAATTACTACAGCGTATTGCTCATAT AGATATGTACTCATTGGCTTGTCTTGCCACAGAAGCTTGCGTCCTTTGCC GACAGCCCTAATAAAACGACGTGGGTTTGCCTCCCTATTGCTGGAGTTCC TCTCCCACCAAAATCTTGGCAAGAAGCCCAGCACCTTCCACCTTCAACTG CTGGGAAGAGAACGAACTTTGGCCACCCCTGTGATGTGATGTGAGGGAGA TCCAGGGCGAGTGCTTAATTTGTACAATTGTATGGCTTCCGGTGGGGCCC TGAACTCGCGTATGTAGGGACACCTCTTCTTTCCCACGCGCTTGTTTATC TTCATGCAAGAAATGTATACTGCCTGCCAATATAGGGCTCGAGACATGGC CGCATTTGTGTGCATGGCGCACGGACAACCACAACGTGCTTAGGAGGAAA ACGAACGTGTCGTACATGTATGGCATCTATTTAGCCGTCGCACCCAATGA CTGACTTGTTGGAGCACACTTATTGCGCATGTACTGGACCTATTGCCTAT TGCCTATCCCCCCCCCCCCTCTTGTTTTTAGTTGTTGATGTGATGACATT CACTGATACGTGAACACTCAATTCTTAAATGGGACAACCACTAATGCGAG AACACTCCATCTCACACGCGTGCGATTGTGCCTCATTACAATTTATATGA ATCACCGCCTATTTCTGGCGAATGGGGCACGACTTTCACCGCCACAGGAG CCCCAGCGGATGGCTGATGCCTGGGAGGGGATACCTACTATTACGAGCAC ACTCCATCTCGCACACATGTGATTGTACCTCGTTACAGTTTATATGAATT TATATAAATCAACGCACAAACTTTCACCGCCGCAGGAGCCCCAGCGGCCG GCCGATGCCTGGGAGGAGATAATTACTACTCGAGTATTATGAGAACACTC ACTCTCGCACACGTGCGATTGTACCTCGTTATGACTTATATGAATCAACG CACAAACTTTCACCGCCACAGGAGCCCCAGCGGCCGGCGGATGCCTGGGA GGGGGGAGACGGCGGAGACGGGCCAGGTACTAGTAGCCCAGTGACGCGCG GGGCAGGGTTTGGAACAACCCCACCGTGGATGGACTCGCGGTGGGAGGTC GGCCCGGCAGATGTGGCAGGGCGGAGAGAATTAAGGTCAGGGATGGAGTA CTACTTGTATTGTACATATATGTACTCACGTTGTGCTTGCCGTAGTCCCG AGACCATTGACCATTGCCATTGTACATTTGTTTCATACGATTGTATAGTA CACTCGGGGTGGGAGGTCGGGCCAGAGGATGTGGCGGGGCGGAGGTCAGG GATATATATATATATATATATGTACCCACGCTGTGCTTGCCATAGTCCCG AGACCATTCGACCACGTGCCTCGATCGAGACGGAGATAAGGTCAGGGATG GAGCGCCATTGTAAATTTGTTTCATACGGCTGTCTTGTACTCGTACGCTA CTCTGGTGGTGCCCCCCAGGGGCGTGCATATGTAGAGTAGTTAGTAGTAG AGCTGGGAACGGGTGTGCATTTCTTTTTTGTTTGTAGCTCGAGTACATTC CTTCCTCATCAACCGGTAAACGCGAAATATCTCTTGTCGTGTTTCCGTTA AAGTCTACTCTATGTGATGAAGAGCACAAACCCTAAACTCCTGCGCAGGC ATCTGCGCGTGTTCAGCGTGGACCCCCCCGGGTGCCAGGACATTGACGAC GCCATGCACATACGGGAACTCCCACGAGGCAGCGGCAGTGGCGGCAGGCG CTTTGAGGTGAGGGTACAGTCATACGAGTACTGTACTGTACTGTGCTGTA CTGTACTGTAGTACTCTACTGTACTCTAGTAATCTGTCCTTTGTGTTCTC AACTTCCAAGTACTTCGAAGTATGATGTACAGTAACCCAAGAATCTGAAC CAAACAAACAGGTGGGAGTGAACTCGCATGAAGTAGGGACACTTCTTTAT TCCCACTCGCTTGGTTGTCTCCTTGCGAAAAAACCAAAAACAATAGGTGG GAGTCCACATCGCGGACGTGACCCGCTTCGTGAAGGCGGGCAGAACAACG ACACAATCTTGAGAAAACTGAGAAGCAACCCCAAGAAACTGAACCGAACA AACAGGAGGGAGTTTCTTTCCATTTGCCCTGCGAGTGAAGGCGGGTGAAG GATGGGCTTTCCTGTTGGGGCCCGGAACTCGCAAAGGTAGGATCACCTAT ATTTTCCACTCGCTTCTTTTCTTTCCACACAAACAGGTGGGAGTCCACAT CGCGGACGTGACCCGCTTCGTGAAGGCGGGCACCCCCCTGGACCGGGAGG CCAGGGCGCGCGGCACCACGGTGTACCTCACGCACACGCGCATGGACATG CTGCCCACCTTGCTCTCCTCCGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:176933..180856+

>mRNA_S-ischiensis_contig9.20391.1 ID=mRNA_S-ischiensis_contig9.20391.1|Name=mRNA_S-ischiensis_contig9.20391.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig9:176933..180856+ (Schizocladia ischiensis KU_0333)
ATGGACTCGCGGTGGGAGGTCGGCCCGGCAGATGTGGCAGGGCGGAGAGA
ATTAAGATGGACTCGCGGTGGGAGGTCGGCCCGGCAGATGTGGCAGGGCG
GAGAGAATTAAGGCATCTGCGCGTGTTCAGCGTGGACCCCCCCGGGTGCC
AGGACATTGACGACGCCATGCACATACGGGAACTCCCACGAGGCAGCGGC
AGTGGCGGCAGGCGCTTTGAGGCATCTGCGCGTGTTCAGCGTGGACCCCC
CCGGGTGCCAGGACATTGACGACGCCATGCACATACGGGAACTCCCACGA
GGCAGCGGCAGTGGCGGCAGGCGCTTTGAGGTGGGAGTCCACATCGCGGA
CGTGACCCGCTTCGTGAAGGCGGGCACCCCCCTGGACCGGGAGGCCAGGG
CGCGCGGCACCACGGTGTACCTCACGCACACGCGCATGGACATGCTGCCC
ACCTTGCTCTCCTCCGACGTGGGAGTCCACATCGCGGACGTGACCCGCTT
CGTGAAGGCGGGCACCCCCCTGGACCGGGAGGCCAGGGCGCGCGGCACCA
CGGTGTACCTCACGCACACGCGCATGGACATGCTGCCCACCTTGCTCTCC
TCCGAC
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