mRNA_S-ischiensis_contig9.20384.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20384.1
Unique NamemRNA_S-ischiensis_contig9.20384.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: D8LN81_ECTSI (TBC1 domain family member 23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN81_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 8.330e-103
Identity = 158/235 (67.23%), Postives = 195/235 (82.98%), Query Frame = 1 
Query:  121 IFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQDPPLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLA----------VDQPHMMPEAVQALEVKDAQELEELVCQGRELLKKLPGAFLETVRSCCSDDGNTPLDTSRSLFCENVR 795
            +FKR++V+ LVS+VLERYCVGHGIRYKQGQNEL+APF+ LQDPPLP  V+GLMF++FMSRFVSRW+ D++ E L V++ VFRVLLFYVDP LA KLDE +F+PELYAT+WLITLFSRNL ++ V RLWDVY+A  DP+LVF LLAALL+RNR+ ++A          VDQ HMMPE +Q+L V D ++LEEL+ Q RE+L+K+P +FL+TVRSCCSD  N PLDTSRSLFCE+VR
Sbjct:    1 MFKREEVMQLVSQVLERYCVGHGIRYKQGQNELIAPFVMLQDPPLPVPVLGLMFESFMSRFVSRWFVDDEIEALLVSYRVFRVLLFYVDPGLARKLDEADFVPELYATAWLITLFSRNLTMELVVRLWDVYLAVNDPSLVFFLLAALLVRNRQAIIASDRTRNTILGVDQAHMMPEMIQSLTVTDKEDLEELIVQAREMLRKVPESFLQTVRSCCSDQCNVPLDTSRSLFCESVR 235
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.690e-41
Identity = 88/224 (39.29%), Postives = 139/224 (62.05%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQDPPLPASVIGLMFDAFMSRFVSRWYC-DEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQPHMMPEAVQALE--VKDAQELEELVCQGRELLKKLPGAFLETVRS 729
            ++QRV+  D++RTR A + FKR  V +L++ +L  +C  HG+ YKQG +E+LAPF+AL DP LP S I L + AF+ RF+   +  DE+F  L + F +FR+LL Y  P L   LD+    PELYAT W +TLFS +L L ++  +WD Y+  GDPAL   ++ A ++ N E +L  ++ ++ PE +  L   ++  +E+  L+   ++L+   P +F + +RS
Sbjct:   55 ENQRVVRVDVERTRPALDQFKRPRVKNLLARILTYHCKTHGLGYKQGMHEVLAPFVALSDPELPTSDISLCYSAFLRRFLPYAFNQDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEAILKAEEANL-PETMCRLTDGMRSVEEVRALMRTAKDLMLNTPKSFRKILRS 277
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: A0A7S3YFA6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA6_HETAK)

HSP 1 Score: 150 bits (378), Expect = 1.870e-41
Identity = 74/166 (44.58%), Postives = 106/166 (63.86%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQDPPLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALL 564
            DD R +AAD+KRTR+   +F+++     + ++L ++C+     YKQG NE+LAPF  L +PPLP  +I  +F+AF+ R++  +  D+DF  L  AF++F +LL Y DP LA  L    F PELYAT W++TLFSR L +  V RLWD  +   DP  VF L+ AL+
Sbjct:    6 DDLRTIAADVKRTRRDLPLFQKEKTQASLEKLLIQWCIQRQTSYKQGLNEVLAPFYTLAEPPLPEELIYKLFEAFVKRYLEVFLLDDDFGCLRRAFALFELLLAYHDPALARHLAGAGFTPELYATPWILTLFSRQLAVGLVLRLWDTLLGADDPNFVFFLMLALV 171
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: A0A5D6Y0Q7_9STRA (TBC1 domain family member 23 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0Q7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.100e-40
Identity = 86/231 (37.23%), Postives = 138/231 (59.74%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQ-DPPLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQPHMMPEAVQALEVKDAQELEELVCQGRELLKKLPGAFLETVRSCC----SDD 744
            ++Q+V++AD  RTR     F++ + ++L++++L  YC   G+RYKQG NE+LAPFL L+ DPPLP  V+   F A + RF+   + D +F+ L  +F ++R+LL Y DP L + LD+ +  PELY T W +TLF+R+L  D V RLWD ++ +  P L+  +  AL+  N++R+L  +   ++P+ + +L      ELE +     +L    P +F   + S C    SDD
Sbjct:  190 ENQKVISADACRTRGHDPFFRQPETVELIAKLLTYYCKCRGVRYKQGMNEVLAPFLILERDPPLPEGVVFQCFYALIDRFLPHVFVDREFKSLQCSFQLYRLLLLYHDPALCHYLDQHDMTPELYVTPWFMTLFARSLPADLVFRLWDFFLLEEHPFLLHFVAYALVAANKDRILRAEIA-LLPQVLTSLTFGSRSELEAICEAALQLANTTPRSFERDLYSVCYGGYSDD 419
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: A0A8K1C6A6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6A6_PYTOL)

HSP 1 Score: 157 bits (396), Expect = 9.270e-40
Identity = 87/227 (38.33%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLAL-QDPPLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQPHMMPEAVQALEVKDAQELEELVCQ-GRELLKKLPGAFLETVRSCCSD 741
            ++Q+V++AD  RTR     FK+   ++LV+++L  YC    IRYKQG NE+LAPFL L Q+PP+P SV+  +F A + +F+   + D +F+ L  +F ++R+L+ Y DP+L N LD+    PELY T W +TLFSRNL  + V +LWD +I   DP L+  +  AL+  +R+ +   D   M+P+ +  +  +  + ++ LVCQ    L++  P +F   + S C D
Sbjct:  125 ENQKVISADACRTRGHDAFFKQPQTIELVTKLLTFYCKSRNIRYKQGMNEVLAPFLMLEQNPPMPDSVVFQLFYALIDKFLPHVFIDREFKSLQCSFQLYRLLMRYHDPMLCNYLDQHAMTPELYVTPWFMTLFSRNLSRELVLQLWDFFILHEDPYLLHFVAYALVEVHRDAIFQSDVA-MLPQVLSNITFETRERMD-LVCQRALTLMETTPQSFKRDLYSVCYD 349
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: K3WLM6_GLOUD (TBC1 domain family member 23 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLM6_GLOUD)

HSP 1 Score: 157 bits (396), Expect = 9.330e-40
Identity = 83/234 (35.47%), Postives = 141/234 (60.26%), Query Frame = 1 
Query:   43 EGLLHFPKD--DQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQ-DPPLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQPHMMPEAVQALEVKDAQELEELVCQGRELLKKLPGAFLETVRSCC 735
            + +L   +D  +Q+V++AD  RTR     FK+ + ++LV+++L  YC    IRYKQG NE+LAPFL L+ DPP+P  ++   F A + +F+ + + D +F+ L  +F ++R+L+ Y DP L + LD+ +  PELY T W +TLF+RNL+ + V  LWD ++ + DP L+  +  A++  N+E +++ +   M+P+ +  + +K   ELE +      L K  P +F   + S C
Sbjct:  205 QSILQVEEDLENQKVISADAIRTRGNDPYFKQPETVELVTKILTYYCKCRNIRYKQGMNEVLAPFLILERDPPMPEGIVFQCFYALIDKFLPQVFVDREFKSLQCSFQLYRLLMLYHDPKLCHYLDQHDMTPELYVTPWFMTLFARNLQPELVFMLWDFFLLEEDPFLMHFVAYAMVAANKEDIMSAEIA-MLPQVLSNITLKTRAELEAVCETALALSKTTPRSFERDLYSVC 437
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: M4BUX6_HYAAE (TBC1 domain family member 23 n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUX6_HYAAE)

HSP 1 Score: 154 bits (388), Expect = 1.090e-38
Identity = 84/231 (36.36%), Postives = 132/231 (57.14%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQDP--------PLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQPHMMPEAVQALEVKDAQELEELVCQGRELLKKLPGAFLETVRSCC 735
            D+QRV+AAD  RTR     FK  + ++LV ++L  YC    I+YKQG NE+LAPFL L +         PL   V+   F A + RF+ + + D++F  L  +  ++R+L+ Y DP L + LD+ +  PELY T W +T F+R+L LD V  LWD+++ + DP ++  +  AL+  NRE++   +   M+P+ + +L      ELE++    R +LK  P +F   + S C
Sbjct:  143 DNQRVIAADAARTRSNELRFKAPETVELVVKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQRKNCTDRVPLAEGVVFQCFYALIDRFLPQVFVDKEFRSLQGSLQLYRLLMLYHDPELCHYLDQRDMTPELYVTPWFMTFFARSLPLDLVFCLWDLFLLEADPYMLHFVAYALVAANREKIFKAEFA-MLPQVLSSLTFSSQHELEKICANARAILKSTPHSFNRDLYSIC 372
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: G4ZA17_PHYSP (TBC1 domain family member 23 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZA17_PHYSP)

HSP 1 Score: 150 bits (380), Expect = 1.280e-37
Identity = 83/231 (35.93%), Postives = 134/231 (58.01%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLAL------QDPPLPAS--VIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQPHMMPEAVQALEVKDAQELEELVCQGRELLKKLPGAFLETVRSCC 735
            D+QRV+AAD  RTR     F++ + ++LV ++L  YC    IRYKQG NE+LAPFL L       D P+P +  V+   F A + +F+   + D++F  L  +F ++++L+ Y DP L + LD+ +  PELY T W +TLF+R+L  + V  LWD ++ + DP L+  +  AL+  NRER+   + P M+P+ + +L     +ELE++      + +  P +F   + S C
Sbjct:   78 DNQRVIAADAARTRGNEPRFQQPETVELVVKLLTYYCKCRSIRYKQGMNEVLAPFLLLTERRDGSDEPVPLAEGVVFQCFYALIDKFLPHVFVDKEFRSLQCSFQLYKLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVANNRERIFEAEIP-MLPQVLSSLTFSTREELEQVCASALAIYESTPRSFKRDLYSVC 307
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: A0A2R5GE11_9STRA (TBC1 domain family member 23 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GE11_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.760e-37
Identity = 81/178 (45.51%), Postives = 112/178 (62.92%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQ-DPPLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGD---PALVFTLLAALLLRNRERLL 588
            ++QRV+  D +RTR   EIF+ +++  LVS +L  YC   GI+YKQG NE+LAPF+ L+ DPPLP   +  MF AF+ RF+   +  EDF  L  +F +FR+LL Y DP L N LD  +  PELYAT W +TLF+RN+ L  + +LWD Y+ + +   P L   +  AL L NR  +L
Sbjct:  923 ENQRVIRVDAQRTRADVEIFRTEEMQLLVSRLLTFYCKRKGIKYKQGLNEVLAPFIMLRRDPPLPDGTVFNMFYAFIERFLPHSFVHEDFHALQCSFRLFRLLLLYHDPELCNFLDTHSLSPELYATPWFLTLFARNVPLKVLYQLWDTYLLEEEDRGPHLHMFVALALTLENRTGIL 1100
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BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Match: A0A8J4SIU0_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4SIU0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.920e-37
Identity = 82/231 (35.50%), Postives = 127/231 (54.98%), Query Frame = 1 
Query:   67 DDQRVLAADIKRTRQAYEIFKRQDVLDLVSEVLERYCVGHGIRYKQGQNELLAPFLALQDP--------PLPASVIGLMFDAFMSRFVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSWLITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQPHMMPEAVQALEVKDAQELEELVCQGRELLKKLPGAFLETVRSCC 735
            D+QRV+AAD  RTR     FK+ + ++LV ++L  YC    I+YKQG NE+LAPFL L +         PL   V+   F A + +F+   + D +F  L  +F ++R+L+ Y DP L + LD+ +  PELY T W +TLF+R L  + V  LWD ++ + DP L+  +  +L+  NR+R+   D   M+P+ + +L      ELE++      L    P +F   + S C
Sbjct:   56 DNQRVIAADASRTRGNEPRFKQPETVELVIKLLTYYCKCRSIQYKQGMNEVLAPFLLLTEQREGSKESVPLAEGVVFQCFYALIDKFLPHVFVDREFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARLLPPEFVFYLWDFFLLEEDPYLLHFVAYSLVAANRKRIFEADVA-MLPQVLSSLTFASYDELEQVCTAALTLSDATPRSFKRDLYSVC 285
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN81_ECTSI8.330e-10367.23TBC1 domain family member 23 n=2 Tax=Ectocarpus Ta... [more]
D7FKI7_ECTSI1.690e-4139.29Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3YFA6_HETAK1.870e-4144.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6Y0Q7_9STRA1.100e-4037.23TBC1 domain family member 23 n=1 Tax=Pythium brass... [more]
A0A8K1C6A6_PYTOL9.270e-4038.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WLM6_GLOUD9.330e-4035.47TBC1 domain family member 23 n=1 Tax=Globisporangi... [more]
M4BUX6_HYAAE1.090e-3836.36TBC1 domain family member 23 n=2 Tax=Hyaloperonosp... [more]
G4ZA17_PHYSP1.280e-3735.93TBC1 domain family member 23 n=1 Tax=Phytophthora ... [more]
A0A2R5GE11_9STRA1.760e-3745.51TBC1 domain family member 23 n=1 Tax=Hondaea ferme... [more]
A0A8J4SIU0_9STRA1.920e-3735.50Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:69627..74537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.9
Seed ortholog evalue5.6e-88
Seed eggNOG ortholog2880.D8LN81
Preferred nameTBC1D23
GOsGO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-05_003850.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size798
Cds size798
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20384.1prot_S-ischiensis_contig9.20384.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 69627..74537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817374.5924127-CDS-S-ischiensis_contig9:69626..696921622817374.5924127-CDS-S-ischiensis_contig9:69626..69692Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 69627..69692 +
1695741065.0116823-CDS-S-ischiensis_contig9:69626..696921695741065.0116823-CDS-S-ischiensis_contig9:69626..69692Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 69627..69692 +
1622817374.6034193-CDS-S-ischiensis_contig9:70223..703271622817374.6034193-CDS-S-ischiensis_contig9:70223..70327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 70224..70327 +
1695741065.0259519-CDS-S-ischiensis_contig9:70223..703271695741065.0259519-CDS-S-ischiensis_contig9:70223..70327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 70224..70327 +
1622817374.6137762-CDS-S-ischiensis_contig9:70872..709451622817374.6137762-CDS-S-ischiensis_contig9:70872..70945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 70873..70945 +
1695741065.0565603-CDS-S-ischiensis_contig9:70872..709451695741065.0565603-CDS-S-ischiensis_contig9:70872..70945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 70873..70945 +
1622817374.6246355-CDS-S-ischiensis_contig9:71447..715701622817374.6246355-CDS-S-ischiensis_contig9:71447..71570Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 71448..71570 +
1695741065.070264-CDS-S-ischiensis_contig9:71447..715701695741065.070264-CDS-S-ischiensis_contig9:71447..71570Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 71448..71570 +
1622817374.637432-CDS-S-ischiensis_contig9:72588..727111622817374.637432-CDS-S-ischiensis_contig9:72588..72711Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 72589..72711 +
1695741065.0801709-CDS-S-ischiensis_contig9:72588..727111695741065.0801709-CDS-S-ischiensis_contig9:72588..72711Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 72589..72711 +
1622817374.6494021-CDS-S-ischiensis_contig9:73134..732201622817374.6494021-CDS-S-ischiensis_contig9:73134..73220Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 73135..73220 +
1695741065.0922801-CDS-S-ischiensis_contig9:73134..732201695741065.0922801-CDS-S-ischiensis_contig9:73134..73220Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 73135..73220 +
1622817374.663411-CDS-S-ischiensis_contig9:73892..739681622817374.663411-CDS-S-ischiensis_contig9:73892..73968Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 73893..73968 +
1695741065.109365-CDS-S-ischiensis_contig9:73892..739681695741065.109365-CDS-S-ischiensis_contig9:73892..73968Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 73893..73968 +
1622817374.6762283-CDS-S-ischiensis_contig9:74390..745371622817374.6762283-CDS-S-ischiensis_contig9:74390..74537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 74391..74537 +
1695741065.132837-CDS-S-ischiensis_contig9:74390..745371695741065.132837-CDS-S-ischiensis_contig9:74390..74537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 74391..74537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20384.1

>prot_S-ischiensis_contig9.20384.1 ID=prot_S-ischiensis_contig9.20384.1|Name=mRNA_S-ischiensis_contig9.20384.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=266bp
RSSLHGRSSDKDHAEGLLHFPKDDQRVLAADIKRTRQAYEIFKRQDVLDL
VSEVLERYCVGHGIRYKQGQNELLAPFLALQDPPLPASVIGLMFDAFMSR
FVSRWYCDEDFEPLSVAFSVFRVLLFYVDPVLANKLDECNFIPELYATSW
LITLFSRNLKLDQVNRLWDVYIAQGDPALVFTLLAALLLRNRERLLAVDQ
PHMMPEAVQALEVKDAQELEELVCQGRELLKKLPGAFLETVRSCCSDDGN
TPLDTSRSLFCENVR*
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mRNA from alignment at S-ischiensis_contig9:69627..74537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20384.1 ID=mRNA_S-ischiensis_contig9.20384.1|Name=mRNA_S-ischiensis_contig9.20384.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4911bp|location=Sequence derived from alignment at S-ischiensis_contig9:69627..74537+ (Schizocladia ischiensis KU_0333)
CGTTCATCACTTCACGGAAGAAGCAGTGACAAGGACCACGCTGAGGGCCT
GCTGCACTTTCCCAAGGTGGGCCGTGTAGTCATGCTGTACCGTGTGACAT
ACAGTAGTGTGACGGGCGGGAACAGCGTTGGCACTTGGAGGTTAACTAGG
GCCTAATTAGCCTTCGTTTAAGGTGAAATTACCCCTGAGTACTTCTAAGT
AATTTAGGGCCTAACAGGGCACCACGTAGGGGTTAGTGCCAACCCTGGGA
GGGAGAACGTTCAGCCCTTCTGCTACCTGGGACACGAGCACAAAAAGTAA
CACTCTCGTACATGGACTTACAGCAGCTACGTTGTGCCGCCGACATCTGC
GCCCTCCTCGTGGTCACCACGATCATCCGATTTGCTGGCCGCTTTGCACT
CCCCACGCCTTTTGTATTCCCATCGCAGCCAGTCGTTGCCTTGGCTGGCG
AGTACTGATCTATATATCTATCGATAGTCGATAGTCGATAGTTTGACCCA
CACTACATCCAAGTAGTTAGTAGCGCCACGTACACAATCAGTCGAGCCCG
ATAACTGTCTACTGATCTATCTGTGATTGTGTGATTGCTTGCACCAGGAT
GACCAGCGCGTGCTGGCTGCGGACATCAAGCGCACCCGCCAGGCTTACGA
AATCTTCAAGCGCCAGGATGTGCTAGACCTTGTCTCGGAAGTGCTCGAAA
GGTGGGCAAGTGCACAAGACAAGCTTGCTACTTCAGCAGTGCAGTCCTGG
GAACGGTACAATAGTAGGGAACACAAGCTTGCTACTTCAGTAGTGCAATC
CTGGGAATGGTACAAAAGTAGGTGTGCATGCCGTAGCAAAGGGCAGCACC
GTTTGTGGTTTTCGACTGTAGACTGCCAGCATGCCCCATCTCAGGACATG
TACGTGCTGTCCTGTAGTGCATACTTAGTTGGGGGCATGAGTGTACTGCC
CGTGGCTCAATACTTGGGGACGTTCGATTCTTTCATATTTGGACGTGCTT
GCCATGTACTTCCTGGAAGTAGTTACTGGAAGTTGGTCGGGCCAACACCT
CGAAATGCGTGTACTGTGCGACCAATGGCATTGACTCCTTTGATACAGTT
CCTGTAGTATGGACGGTTGTATCTTGTCTTGTACTGTACAATGCTACCGC
GCAGGCAGATGCTTTGACCGACGAATAGATTCAATTGCGGATATGTGTGT
CCATTTTGCTGGATATGTCCGTTCCCCCTGTCATTCACGGTAACAGGTAC
TGCGTGGGGCATGGCATCCGCTACAAGCAGGGCCAGAATGAGCTCTTGGC
CCCCTTCCTGGCTCTACAGGTCAGTTACATATATAGTATATGGTGTACAG
TAGGACGCGTGGCCAATGGCGAAAGCTACAGCTGGCCAGCAATCCACGAG
AAGGAGCAAAGACGAGGATCGTTCGGGTCCAGGGCATGCACAGAGACGTG
AGTACACACAGTAGTGTGTACAGTACGTGTTGTGCTACTGTACCCTACTG
TACAGTGAGTGCTCCGTGCTTGGAAGTATGCTGTACTGTGCTGATGGTAC
TGTACTGCAATACTGTACCAGTAGTGCACGTGGCATCGTTTGTACTGGAG
TGCTCACCAACTGGGTGTTTTCGAGTACTTTAGCCCGTGTGTGCGTGGCC
GACAAATCACATGCTTGCATGTTGCTACGGTATTGCCTGCGTCAATGTCA
ATATCAGTACTTGCCTGCATAAGGTGCGCGGCATGGTCTAATGACGCGCC
TTGCCCATCGTCTGACCGTCTTCTGCTGTGCTGTCCTTTGTTGCGGGGAC
CCCCTCCTCTATCGGGCGCAGGACCCGCCTCTCCCAGCGTCGGTGATCGG
CCTCATGTTCGACGCCTTCATGAGCCGTTTTGTGAGCCGATGGTACTGCG
ATGAGGATTTTGAGCCGCTCAGCGTGGCCTTCAGCGTGTTTAGGGTGAGA
GAATGTACTCAGTACAGTACAGTTCAGCGTATTTGGCGTGAGATGTACTC
AGTACAGTAGAGCACTTGTTTGTACTTCAGTGCAGCCAAACAACGGTATG
TACAGTATGTACTGCTCCGTCTCGACCGAGGCTCATGGTCAATGGTCTCG
GGACTACGGCAAGCACAATGTGAGTACTTCGAAGTGCATATACTTTGTAT
GTATACTGTACTGTACTGGCTGTGCTTACTTGCTGCTGCGGCAGATGCTT
CCTGAGTAGTAGTGCAGCAGAGTACAGTACAGTACAGTAAATTACGGTAC
TGTGCTTGTTAATGTACTGTAGTAGTGAAATGGAAGTGCTGAGGATACTC
ATGCTACATATACAGTGTGCAGCAGTCGATCACACAAACAGGCCCCGCAG
GCGTTTTAGTCATTTGCTGCGTACTGGAAGTGCTCCGCTGCTGTGCATGT
ACTGTGCAAGTACTTCCAATTACTTGCAAGTACCGCACCTGGCATGCTTG
GAGGTGTCTTTTGCCCCGACAACCTGACCAGTGTGACTGGTGCCTGAGCA
TAACAACAAACCTTGTTGTACATGTGTGCTTAGGTAGTATTGGATACATA
CAGGTACACTACAGTTGTACAAGTACTCATGCTGTGCTACTCCTAGAGCT
GTGCTTGCCATAGTCCCAAGACCGTTGACCTCAGACTGTACCCGACCAAG
ACCACCACCACCATCACCACCACCACCACCACCACCACCACCTCCACCAC
CACCACCACCATCGCAGATGCCTACACCTGATTCTTCCCTACTGTAGGTG
CTTCTCTTCTACGTGGACCCCGTCCTGGCAAACAAGCTGGATGAGTGCAA
CCCTAGCCCTAGCCCTTACCCTAACCCTAACCTCCGTTTCCCTACTGTAC
TGTAGGTGCGTCTCTTCTACGTGGACCCAGTCCTGGCCAACGAGCTGGAC
GAGTGCAACTTCATCCCAGAACCCTAACCCTAACCCTAGCCCTATCCCTA
ACCCTACTGTAGGTTCTTCTCTTCTACGTGGACCCGGTCCTGGCCAACAA
GCTGGACGAGTGCAACTTCATACCAGAGCTGTACGCCACATCCTGGCTCA
TCACGCTCTTCAGCCGAAACCTCAAACTGGACCAGGTCAGTCAAGCAACC
CTAGCCCTAGCCCTAACCTAGCCAACTTCATCCCAGAGCTGTGCGCCACC
TCCTGGCTCATCGCGCTCTTCAGCCGAAACCTTAAACTGGACCAGGTCAG
TCAAGCAAACTGTGGCATGTCTACCACTACGGGACAGATTAAGTAATGTT
TTTCTTTGGGCACAGTTTCATGAGGGAGGTCGAGATGGGCAAATCTGAGT
TCACTTCTTGGTAGTATCACTCACCCAGGGGGGAGATCACATTGCTTGCA
TGTGTAGGAAGTTCTTGGAAGTCCCTGGAAGTATGTGGAAGTACGTGGAA
GTACTTGCTGTAGCATACAACAGTGTTTTGGGTCAGCGCCTAAGTAACCC
TAACCCTAACCTCTTGAGTATGCTTGACAATTTTCCAATTGTCAATTGTC
AACCTCAGGTGAACCGTCTGTGGGACGTGTACATTGCTCAAGGGGACCCC
GCCCTGGTCTTCACGCTCCTCGCCGCACTGCTTTTGCGCAACAGGTACTT
CTTCACTTCACACACAATGTTAAACACTATGTGGTAATACCAAGAAGTTG
TCTGTACTGTACTTGTACTCAGGGTTACTATGCGGGCCAACCCAGTCCTG
ACCATAGCCACCAATAATTCTACTCGACAATAAGAGCCTCCCCCTGTCTC
AGTTTGAACACGCAGAGACTTGGACCAGCCCTACAGTACAGTGCAGTACA
GTACAGTACAGCACAATACAATTCCCCTACTTGTAACTGTACCTGTAACT
GTCACTGTCGTCTGTGTGTCAATCGTTGGAATGTCCAGGGAGTACAGTAC
AGTACAGTACAGTACAGAAGTACAATATTGTACAATGCCCCTACTTGTAA
CTGTCCCTGCAACTGTCACGATCATCTGTGTGTCTAGGGAGAGGCTGCTT
GCGGGGGATCAGCCACACATGATGCCAGTACAACACCCCTACTTGCAACT
GTACCTGTAGCAGTCACTACCTCAGTACAGTGCAGTACAGTACAGCGCAA
TACCCCCACTTGTAGCTGTACCTGTAGCTGATACTTTTGTCATCTGTGTG
TCAATCGTTGGAATGTACCGTACAGTACAGTACAATACCCTTCTTGTAAC
TGTCCCTATACCTGTACTCGAGTACCTATAGCTGTACCTGCCACTGTCAA
TCGTTGGAATGTCCAGGGAGAGGCTGCTTGCGGTGGATCAGCCCCACATG
ATGCCCGAGGCCGTACAAGCCCTAGAGGTCAAGGATGCACAGGTGGGTGG
GATCTGGGTGGGCGCGTGCCCATGTGCGTTTGGTGTGTACATGTTTTAAG
AATATTTTGCGGGCCCCGTCCCGACAACCGAAGGTGGGGACCACCAGAAG
CCCTTCTTTTCACCCGCAGGGCATAGAAACCAAGTGCTTTAACGTGCGTG
CTTGCATGTATGTGCGTGCGTTTGTGGCACACCCTACTTGACATATATGC
GCAGCAGCCTAATCTCTGCTCTGTCTCGAACGGGGCGCGTGGTCAATGGT
CTCGGGACTACGGCAAGCACAACGTGAGTACATATCTACTCGTATATATG
TATACTACGTACAGTAGTATATATGTACTCATCGGCTTGTCTTGCAACAT
AACCTTGCGTGCAATGCCAACAGCCCTACTGTAGTCTCTTACTGCTACAA
CTCTTGTGGAACAGGAGCTGGAGGAGCTTGTGTGCCAGGGGCGTGAGCTG
CTCAAGAAGCTTCCGGGTGCCTTCCTGGAAACCGTGCGCAGCTGCTGCAG
TGACGACGGCAACACTCCCTTGGACACCTCCCGCTCACTCTTCTGCGAAA
ACGTCAGGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:69627..74537+

>mRNA_S-ischiensis_contig9.20384.1 ID=mRNA_S-ischiensis_contig9.20384.1|Name=mRNA_S-ischiensis_contig9.20384.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1596bp|location=Sequence derived from alignment at S-ischiensis_contig9:69627..74537+ (Schizocladia ischiensis KU_0333)
CGTTCATCACTTCACGGAAGAAGCAGTGACAAGGACCACGCTGAGGGCCT
GCTGCACTTTCCCAAGCGTTCATCACTTCACGGAAGAAGCAGTGACAAGG
ACCACGCTGAGGGCCTGCTGCACTTTCCCAAGGATGACCAGCGCGTGCTG
GCTGCGGACATCAAGCGCACCCGCCAGGCTTACGAAATCTTCAAGCGCCA
GGATGTGCTAGACCTTGTCTCGGAAGTGCTCGAAAGGATGACCAGCGCGT
GCTGGCTGCGGACATCAAGCGCACCCGCCAGGCTTACGAAATCTTCAAGC
GCCAGGATGTGCTAGACCTTGTCTCGGAAGTGCTCGAAAGGTACTGCGTG
GGGCATGGCATCCGCTACAAGCAGGGCCAGAATGAGCTCTTGGCCCCCTT
CCTGGCTCTACAGGTACTGCGTGGGGCATGGCATCCGCTACAAGCAGGGC
CAGAATGAGCTCTTGGCCCCCTTCCTGGCTCTACAGGACCCGCCTCTCCC
AGCGTCGGTGATCGGCCTCATGTTCGACGCCTTCATGAGCCGTTTTGTGA
GCCGATGGTACTGCGATGAGGATTTTGAGCCGCTCAGCGTGGCCTTCAGC
GTGTTTAGGGACCCGCCTCTCCCAGCGTCGGTGATCGGCCTCATGTTCGA
CGCCTTCATGAGCCGTTTTGTGAGCCGATGGTACTGCGATGAGGATTTTG
AGCCGCTCAGCGTGGCCTTCAGCGTGTTTAGGGTTCTTCTCTTCTACGTG
GACCCGGTCCTGGCCAACAAGCTGGACGAGTGCAACTTCATACCAGAGCT
GTACGCCACATCCTGGCTCATCACGCTCTTCAGCCGAAACCTCAAACTGG
ACCAGGTTCTTCTCTTCTACGTGGACCCGGTCCTGGCCAACAAGCTGGAC
GAGTGCAACTTCATACCAGAGCTGTACGCCACATCCTGGCTCATCACGCT
CTTCAGCCGAAACCTCAAACTGGACCAGGTGAACCGTCTGTGGGACGTGT
ACATTGCTCAAGGGGACCCCGCCCTGGTCTTCACGCTCCTCGCCGCACTG
CTTTTGCGCAACAGGTGAACCGTCTGTGGGACGTGTACATTGCTCAAGGG
GACCCCGCCCTGGTCTTCACGCTCCTCGCCGCACTGCTTTTGCGCAACAG
GGAGAGGCTGCTTGCGGTGGATCAGCCCCACATGATGCCCGAGGCCGTAC
AAGCCCTAGAGGTCAAGGATGCACAGGGAGAGGCTGCTTGCGGTGGATCA
GCCCCACATGATGCCCGAGGCCGTACAAGCCCTAGAGGTCAAGGATGCAC
AGGAGCTGGAGGAGCTTGTGTGCCAGGGGCGTGAGCTGCTCAAGAAGCTT
CCGGGTGCCTTCCTGGAAACCGTGCGCAGCTGCTGCAGTGACGACGGCAA
CACTCCCTTGGACACCTCCCGCTCACTCTTCTGCGAAAACGTCAGGTGAG
AGCTGGAGGAGCTTGTGTGCCAGGGGCGTGAGCTGCTCAAGAAGCTTCCG
GGTGCCTTCCTGGAAACCGTGCGCAGCTGCTGCAGTGACGACGGCAACAC
TCCCTTGGACACCTCCCGCTCACTCTTCTGCGAAAACGTCAGGTGA
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