mRNA_S-ischiensis_contig9.20723.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20723.1
Unique NamemRNA_S-ischiensis_contig9.20723.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2833785..2834891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1107
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20723.1prot_S-ischiensis_contig9.20723.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2834002..2834610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.1157975-UTR-S-ischiensis_contig9:2833784..28340011622817373.1157975-UTR-S-ischiensis_contig9:2833784..2834001Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2833785..2834001 +
1695741064.1646554-UTR-S-ischiensis_contig9:2833784..28340011695741064.1646554-UTR-S-ischiensis_contig9:2833784..2834001Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2833785..2834001 +
1622817373.140157-UTR-S-ischiensis_contig9:2834610..28348911622817373.140157-UTR-S-ischiensis_contig9:2834610..2834891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2834611..2834891 +
1695741064.1908844-UTR-S-ischiensis_contig9:2834610..28348911695741064.1908844-UTR-S-ischiensis_contig9:2834610..2834891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2834611..2834891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.1269689-CDS-S-ischiensis_contig9:2834001..28346101622817373.1269689-CDS-S-ischiensis_contig9:2834001..2834610Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2834002..2834610 +
1695741064.1783032-CDS-S-ischiensis_contig9:2834001..28346101695741064.1783032-CDS-S-ischiensis_contig9:2834001..2834610Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2834002..2834610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20723.1

>prot_S-ischiensis_contig9.20723.1 ID=prot_S-ischiensis_contig9.20723.1|Name=mRNA_S-ischiensis_contig9.20723.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=203bp
MILRHRRASINWGAYACRASGRPRSTAGRLRFLGAIRSVSAGVLRDERPC
PRDPAYHPGPGGRPGHVRTGTRFGENPQIRCKLLPGIVGVLQSHLDLGAP
AGGGDRVSHAVGAATLVILTPVRGAGIVRVFGLQVALLHESSTSAPPRSH
NNLGIARMRVATVRLPSRPEAARLFCLPIRGHPQGTSRICRPQNYGLLIT
QR*
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mRNA from alignment at S-ischiensis_contig9:2833785..2834891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20723.1 ID=mRNA_S-ischiensis_contig9.20723.1|Name=mRNA_S-ischiensis_contig9.20723.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1107bp|location=Sequence derived from alignment at S-ischiensis_contig9:2833785..2834891+ (Schizocladia ischiensis KU_0333)
GTTCAAGCCATGTAAGGGTGTGCACTGCAAGGGAAACCGTACGACATGTA
ATTGTGGCCGCCTTTTTCTCTCTCCACCGCCTAATTCATGAGCTACTGCC
ACAGCAAAAAAAGGGCGAAACTACACTGGCCGTTTGCTGTGGCTTCTAGG
AGGTGCTGCGGTCCAACTACCGCAGCACAGCTAAACACCTAGCACGACAT
ATTGAGTTTGTCTGCCCATGATCTTGCGACATCGGAGAGCCTCGATAAAT
TGGGGGGCATACGCGTGCCGGGCCAGCGGGCGCCCAAGGTCAACTGCAGG
ACGCCTACGATTCCTGGGAGCCATTCGCAGCGTATCTGCGGGTGTGCTCC
GAGATGAACGTCCGTGCCCACGTGACCCGGCGTACCATCCCGGGCCTGGT
GGAAGGCCGGGTCACGTGCGCACGGGCACTCGTTTCGGAGAAAACCCGCA
GATCCGCTGCAAACTGCTCCCGGGCATCGTAGGAGTCCTGCAGTCCCATC
TTGACCTTGGGGCGCCCGCTGGCGGTGGCGATCGAGTCAGCCATGCCGTC
GGCGCGGCCACGCTCGTAATCTTGACCCCGGTACGCGGCGCTGGTATAGT
CCGCGTCTTCGGCCTCCAAGTTGCCCTCCTCCACGAAAGTTCGACCTCAG
CACCTCCTAGAAGCCACAACAACTTGGGCATAGCCCGCATGCGCGTTGCA
ACGGTTAGGTTACCCAGTCGGCCAGAAGCTGCAAGGCTTTTCTGTCTGCC
AATCAGAGGCCACCCTCAGGGAACCTCGAGAATCTGCCGTCCCCAAAATT
ACGGCCTATTGATAACTCAGCGCTGATAACTTAATTCCAGCGATGGGAGG
GTCCCGCCATCACATCACACACAATAACGAACATACAAAGTACTTCCGGA
AGTACCACGCATCATCTGTTGTCACGCATTGGGGGACCCGACCCGCCCCC
CCCGTTTGGAGCGCGGAGGGGGGGGGGGGCAAGCGGTAGGGGGGGTCCCC
CAACGCTCACTTTCCAATTTGGGCAAGTACTACGGAGTGCGCTGTGCACG
CAGACTGCACTCGATGACCCCCACACTCGTACATGCGTGCAAACCGCGGG
CCTCGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2833785..2834891+

>mRNA_S-ischiensis_contig9.20723.1 ID=mRNA_S-ischiensis_contig9.20723.1|Name=mRNA_S-ischiensis_contig9.20723.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1218bp|location=Sequence derived from alignment at S-ischiensis_contig9:2833785..2834891+ (Schizocladia ischiensis KU_0333)
ATGATCTTGCGACATCGGAGAGCCTCGATAAATTGGGGGGCATACGCGTG
CCGGGCCAGCGGGCGCCCAAGGTCAACTGCAGGACGCCTACGATTCCTGG
GAGCCATTCGCAGCGTATCTGCGGGTGTGCTCCGAGATGAACGTCCGTGC
CCACGTGACCCGGCGTACCATCCCGGGCCTGGTGGAAGGCCGGGTCACGT
GCGCACGGGCACTCGTTTCGGAGAAAACCCGCAGATCCGCTGCAAACTGC
TCCCGGGCATCGTAGGAGTCCTGCAGTCCCATCTTGACCTTGGGGCGCCC
GCTGGCGGTGGCGATCGAGTCAGCCATGCCGTCGGCGCGGCCACGCTCGT
AATCTTGACCCCGGTACGCGGCGCTGGTATAGTCCGCGTCTTCGGCCTCC
AAGTTGCCCTCCTCCACGAAAGTTCGACCTCAGCACCTCCTAGAAGCCAC
AACAACTTGGGCATAGCCCGCATGCGCGTTGCAACGGTTAGGTTACCCAG
TCGGCCAGAAGCTGCAAGGCTTTTCTGTCTGCCAATCAGAGGCCACCCTC
AGGGAACCTCGAGAATCTGCCGTCCCCAAAATTACGGCCTATTGATAACT
CAGCGCTGAATGATCTTGCGACATCGGAGAGCCTCGATAAATTGGGGGGC
ATACGCGTGCCGGGCCAGCGGGCGCCCAAGGTCAACTGCAGGACGCCTAC
GATTCCTGGGAGCCATTCGCAGCGTATCTGCGGGTGTGCTCCGAGATGAA
CGTCCGTGCCCACGTGACCCGGCGTACCATCCCGGGCCTGGTGGAAGGCC
GGGTCACGTGCGCACGGGCACTCGTTTCGGAGAAAACCCGCAGATCCGCT
GCAAACTGCTCCCGGGCATCGTAGGAGTCCTGCAGTCCCATCTTGACCTT
GGGGCGCCCGCTGGCGGTGGCGATCGAGTCAGCCATGCCGTCGGCGCGGC
CACGCTCGTAATCTTGACCCCGGTACGCGGCGCTGGTATAGTCCGCGTCT
TCGGCCTCCAAGTTGCCCTCCTCCACGAAAGTTCGACCTCAGCACCTCCT
AGAAGCCACAACAACTTGGGCATAGCCCGCATGCGCGTTGCAACGGTTAG
GTTACCCAGTCGGCCAGAAGCTGCAAGGCTTTTCTGTCTGCCAATCAGAG
GCCACCCTCAGGGAACCTCGAGAATCTGCCGTCCCCAAAATTACGGCCTA
TTGATAACTCAGCGCTGA
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