mRNA_S-ischiensis_contig9.20592.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20592.1
Unique NamemRNA_S-ischiensis_contig9.20592.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20592.1 vs. uniprot
Match: A0A2V8Q513_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8Q513_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-5
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  391 CPPLSVAAFQGKTGMVKHLLDAGATVDARDAKLGHTALHQAAECGHVEVMQQLVHAGAHVEAL 579
            CPPL +AA +G+   V++LLD GA V+A D  +G+TAL +A   GHV ++++L+  GA++ +L
Sbjct:   70 CPPLFLAASEGRLNAVRYLLDQGADVNALD-NMGNTALIEATYYGHVPIIKELLVGGANINSL 131
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V8Q513_9BACT1.150e-544.44Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1699710..1700751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_000150.1
Exons1
Model size1043
Cds size693
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.0812223-CDS-S-ischiensis_contig9:1699709..17004021622817372.0812223-CDS-S-ischiensis_contig9:1699709..1700402Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1699710..1700402 +
1695741063.639468-CDS-S-ischiensis_contig9:1699709..17004021695741063.639468-CDS-S-ischiensis_contig9:1699709..1700402Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1699710..1700402 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.0941494-UTR-S-ischiensis_contig9:1700402..17007511622817372.0941494-UTR-S-ischiensis_contig9:1700402..1700751Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1700403..1700751 +
1695741063.6507232-UTR-S-ischiensis_contig9:1700402..17007511695741063.6507232-UTR-S-ischiensis_contig9:1700402..1700751Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1700403..1700751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20592.1prot_S-ischiensis_contig9.20592.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1699710..1700402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20592.1

>prot_S-ischiensis_contig9.20592.1 ID=prot_S-ischiensis_contig9.20592.1|Name=mRNA_S-ischiensis_contig9.20592.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=231bp
AGDVGLVKALLESGADVNGSCCKNSGTALHVAAAEGQTAVLREVLGAGAD
VNAKNSQGYTALHLASLYGNVLAAEELLAAGAAVHETVADNTEASALHLA
CLHGHSTVVRVLLRAGGNAHIKITGGGFAGCPPLSVAAFQGKTGMVKHLL
DAGATVDARDAKLGHTALHQAAECGHVEVMQQLVHAGAHVEALDDDSDTP
LHSAACRGHIAALTCLLGAGAEKQARDSEG*
back to top

mRNA from alignment at S-ischiensis_contig9:1699710..1700751+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20592.1 ID=mRNA_S-ischiensis_contig9.20592.1|Name=mRNA_S-ischiensis_contig9.20592.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1042bp|location=Sequence derived from alignment at S-ischiensis_contig9:1699710..1700751+ (Schizocladia ischiensis KU_0333)
GCTGGGGACGTGGGCCTGGTGAAAGCTCTTCTGGAGTCAGGGGCGGACGT
GAATGGATCTTGCTGCAAGAACAGCGGAACCGCCCTGCATGTGGCAGCTG
CGGAGGGGCAGACAGCAGTCCTGCGCGAAGTGCTTGGGGCTGGGGCGGAC
GTCAACGCCAAGAACAGCCAGGGGTATACAGCTCTCCACCTGGCTTCCCT
TTACGGTAATGTCCTGGCTGCAGAGGAGCTACTGGCGGCAGGGGCTGCGG
TTCACGAGACTGTGGCAGACAACACGGAGGCGAGCGCGCTGCATCTGGCT
TGTCTGCATGGCCACTCCACAGTGGTGCGGGTGCTGCTCAGGGCTGGCGG
CAATGCTCACATCAAGATCACTGGGGGGGGGTTCGCAGGATGCCCCCCCC
TCTCTGTGGCCGCGTTTCAGGGCAAGACGGGGATGGTAAAGCACCTGCTG
GATGCGGGAGCCACCGTCGATGCCAGGGACGCTAAGTTGGGGCATACAGC
GCTCCACCAAGCCGCTGAGTGTGGCCACGTGGAGGTGATGCAGCAGCTGG
TGCATGCCGGTGCCCACGTGGAGGCGCTGGACGACGACTCTGATACGCCC
TTGCACTCGGCCGCGTGTAGAGGCCACATAGCGGCATTGACGTGTCTGCT
GGGTGCGGGGGCGGAGAAACAGGCCCGAGACTCTGAAGGGTAAACGCGTC
TCCAAGCCGCTGCTGTGTGGGGACATCGGGATGCAACCCAAGCTCTTCTT
GAGGCAGGTGCCGATCCACGAGCACATGCTGTGGAACTCGGCACCCCCCT
TCATAGGGCTTGTGCCTTCCTGGAACAGGGGAGTGTCGAGGTGCTCCTCC
GCTTCGGGGCAGACGAGATGGCCACAGACAACCAAGGCTGCACGTCCGCC
CAGGTTGTCGGGGACAGGCATGACAATGCCGACCGGGACCCAGCCGCAGT
GGCACACATCACTGACATGCTGCAGAAGGCACCCTTGGACCGGGCCTGGT
ATCGCAGGGCGTGGCTGGTCATGCTGCGGGCCCGCCAGCGCT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1699710..1700751+

>mRNA_S-ischiensis_contig9.20592.1 ID=mRNA_S-ischiensis_contig9.20592.1|Name=mRNA_S-ischiensis_contig9.20592.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1386bp|location=Sequence derived from alignment at S-ischiensis_contig9:1699710..1700751+ (Schizocladia ischiensis KU_0333)
GCTGGGGACGTGGGCCTGGTGAAAGCTCTTCTGGAGTCAGGGGCGGACGT
GAATGGATCTTGCTGCAAGAACAGCGGAACCGCCCTGCATGTGGCAGCTG
CGGAGGGGCAGACAGCAGTCCTGCGCGAAGTGCTTGGGGCTGGGGCGGAC
GTCAACGCCAAGAACAGCCAGGGGTATACAGCTCTCCACCTGGCTTCCCT
TTACGGTAATGTCCTGGCTGCAGAGGAGCTACTGGCGGCAGGGGCTGCGG
TTCACGAGACTGTGGCAGACAACACGGAGGCGAGCGCGCTGCATCTGGCT
TGTCTGCATGGCCACTCCACAGTGGTGCGGGTGCTGCTCAGGGCTGGCGG
CAATGCTCACATCAAGATCACTGGGGGGGGGTTCGCAGGATGCCCCCCCC
TCTCTGTGGCCGCGTTTCAGGGCAAGACGGGGATGGTAAAGCACCTGCTG
GATGCGGGAGCCACCGTCGATGCCAGGGACGCTAAGTTGGGGCATACAGC
GCTCCACCAAGCCGCTGAGTGTGGCCACGTGGAGGTGATGCAGCAGCTGG
TGCATGCCGGTGCCCACGTGGAGGCGCTGGACGACGACTCTGATACGCCC
TTGCACTCGGCCGCGTGTAGAGGCCACATAGCGGCATTGACGTGTCTGCT
GGGTGCGGGGGCGGAGAAACAGGCCCGAGACTCTGAAGGGTAAGCTGGGG
ACGTGGGCCTGGTGAAAGCTCTTCTGGAGTCAGGGGCGGACGTGAATGGA
TCTTGCTGCAAGAACAGCGGAACCGCCCTGCATGTGGCAGCTGCGGAGGG
GCAGACAGCAGTCCTGCGCGAAGTGCTTGGGGCTGGGGCGGACGTCAACG
CCAAGAACAGCCAGGGGTATACAGCTCTCCACCTGGCTTCCCTTTACGGT
AATGTCCTGGCTGCAGAGGAGCTACTGGCGGCAGGGGCTGCGGTTCACGA
GACTGTGGCAGACAACACGGAGGCGAGCGCGCTGCATCTGGCTTGTCTGC
ATGGCCACTCCACAGTGGTGCGGGTGCTGCTCAGGGCTGGCGGCAATGCT
CACATCAAGATCACTGGGGGGGGGTTCGCAGGATGCCCCCCCCTCTCTGT
GGCCGCGTTTCAGGGCAAGACGGGGATGGTAAAGCACCTGCTGGATGCGG
GAGCCACCGTCGATGCCAGGGACGCTAAGTTGGGGCATACAGCGCTCCAC
CAAGCCGCTGAGTGTGGCCACGTGGAGGTGATGCAGCAGCTGGTGCATGC
CGGTGCCCACGTGGAGGCGCTGGACGACGACTCTGATACGCCCTTGCACT
CGGCCGCGTGTAGAGGCCACATAGCGGCATTGACGTGTCTGCTGGGTGCG
GGGGCGGAGAAACAGGCCCGAGACTCTGAAGGGTAA
back to top