mRNA_S-ischiensis_contig9.20805.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20805.1
Unique NamemRNA_S-ischiensis_contig9.20805.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3417140..3419842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size567
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20805.1prot_S-ischiensis_contig9.20805.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3417142..3419842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.6643384-CDS-S-ischiensis_contig9:3417141..34173961622817369.6643384-CDS-S-ischiensis_contig9:3417141..3417396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3417142..3417396 -
1695741062.4343846-CDS-S-ischiensis_contig9:3417141..34173961695741062.4343846-CDS-S-ischiensis_contig9:3417141..3417396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3417142..3417396 -
1622817369.6760535-CDS-S-ischiensis_contig9:3418210..34184761622817369.6760535-CDS-S-ischiensis_contig9:3418210..3418476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3418211..3418476 -
1695741062.4492598-CDS-S-ischiensis_contig9:3418210..34184761695741062.4492598-CDS-S-ischiensis_contig9:3418210..3418476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3418211..3418476 -
1622817369.689645-CDS-S-ischiensis_contig9:3419799..34198421622817369.689645-CDS-S-ischiensis_contig9:3419799..3419842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3419800..3419842 -
1695741062.4593928-CDS-S-ischiensis_contig9:3419799..34198421695741062.4593928-CDS-S-ischiensis_contig9:3419799..3419842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3419800..3419842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20805.1

>prot_S-ischiensis_contig9.20805.1 ID=prot_S-ischiensis_contig9.20805.1|Name=mRNA_S-ischiensis_contig9.20805.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=188bp
LSLSGPLGEVNVSAGNSVLVSATAGQVHLAAADAIDGFINATAGAKVSLQ
APSCSLYMDKEGGVRAAGEAGVSLFGGGGGVASVVVGAEAAGRVSVRGDE
AVEVEGGSLVRLAAINGTLHLSAGGLSPDLPTTGAGSSPPPPPPPPPSSS
SPLPPPSSSTLVLHEGSAALSSALVNVFATGTLRFSAG
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mRNA from alignment at S-ischiensis_contig9:3417140..3419842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20805.1 ID=mRNA_S-ischiensis_contig9.20805.1|Name=mRNA_S-ischiensis_contig9.20805.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2703bp|location=Sequence derived from alignment at S-ischiensis_contig9:3417140..3419842- (Schizocladia ischiensis KU_0333)
TTGTCCCTGTCTGGGCCGTTGGGAGAGGTGAACGTCTCGGCAGGTGTGTC
CCTGCAGGGCGGTGACACGTATTCGCGTCGCCATCACCATACGAGCGTTT
GTTTTGGTCCTCAAAGCCTCGCGCGCCTGGCTTCCCCAGCCGCCTTCAAA
CGCACACGCAGGACGGATTGTCACCAGGTAAGTATGCTGTACGAGTACTG
TTCTTCTACAGTGGGTGTACCACTGTACGTAGTATGAGAATGTACAGTAT
GTACTTCGAAGTACAGTACAGCACAACAATAGCAGCAGAACCACTGTACT
GATGGCGAGTGAAAGGAAGGGCTTCCGGGGGTGGGGCCCTGAGCTTGCGT
ATGTAGGAACACCTCTTGTTTCCCACGCGCTTGTTTATCTTCTTGCAAAA
GAACACTGTACTCGAGTAAACTACTGTCTCAATGATATGCAACGCACTGT
ACCTCGTCCGGCTACTTACCAGCACCATGGTCCCCGGGGCCCTGTCGCGG
GGAAGCGCTTCGTAGCCCCGGCGTACTCTAGCTCAAAGCAGCCCCACCCA
CTCACCCCCCTCCCACTAGAGCCTGCCTTGAAACTCTCCCCCCCCCCCAG
GGTTGACACTTAACCCCTACTTAAGCGGTGCCCTTCTACGCCTTCAATTA
GAGGTTAATAGGGGCAATTAGACCTGAATTGAAGCCTAATTAGGCCCTAA
TCAACATCTAAGCGCCAACCCCCCCCCCCCAGGAAACTCGGTGCTGATAT
CGGCCGCGGCAGGCCTCATCCGCCTGGCCCCCGACAACGCGGACCCCCCC
CCGCTAAAGCCTACCTTGACCCCCCCAACACCAGGAAATTCGGTGGTCAT
GTCGGCCTCTGCAGGCCAGGTCCGCCCACAGTGGCCAACACCCCCCTCCC
GCTAAAGCCTGCCCTGAGACCCTCCCCCCCCCCCCAACACCATGAAACTC
GGTGGTCATGTCGGCGACTGCAGGCGAGGTCCGCCCACAGTGACCAACAC
CCCCCTCCCGCTAAAGCCTGGCTTGAACCCCCAACACCAGGAAAATCAGT
GCTGATATTGGCCAATGCGGGCCAGGTCCGTCTGGCCGCCAACAATGCGA
TTGGTGGTTTCATCAATGCCACGGCAGGCCCTGTAGCTGGGAAGCGCTTC
GCAGCCCCGGCGTACAAAGCTCGAAGTAGCCCCCCCACCCACTCACCCCC
CTCCCGCTAAAGTCTGCCTTGAAACTCTTCCCCCCCCCCCAGGGTTGGCA
CTTGACCCCTAAGTGGTGCCTTAAGTAGAGGCAATAAGGGGTACCTATAC
CTAAAATGAAGGCTAGTTAGGCCCTAATCAACATCTAAGTGCCAATGCTG
CCCCCCCCAATGCCAGGAAACTCAGTGCTCGTATCGGCCACTGCAGGCCA
GGTCCACCTGGCCGCCGCCGATGCCATTGACGGTTTCATCAATGCCACGG
CCGGGGCTAAGGTGTCCCTGCAGGCCCCGTCCTGCAGCCTGTATATGGAC
AAGGAAGGGGGGGTCAGGGCTGCCGGTGAAGCAGGGGTATCCCTGTTTGG
TGGTGGTGGTGGTGTCGCGAGTGTGGTGGTCGGGGCTGAGGCGGCGGGGA
GGGTGTCGGTCCGGGGAGACGAGGCTGTGGAGGTGTGTGATGTGGTGTGG
TGGGGGGTGGGGTGGTGGGGTGTGGTGAGGTGTGATGTGATGTGATGTGA
TGTGGTGTGGTTTGGTGTGGTGTGGTGTGATGTGGTGTGGTGTGGTGTGA
TGTGACGTGGTGTCATGTGGTGTCATGTGATGTGATATGGTGTGGTGTGG
TGTGGTGTCATGATGTGGTGTGGTGTGGTGTGGTGTGGTGTGATGTGATG
TGATGCCATGTCATGTGATATTATGTGATGTGGTGTGATGTGATACTGGC
GCTCCTCTTTTGTACTGTACGTAGTTTGCCATCGCTTCACATCGCATATT
GCATCGCATCGGGTTGGCAGACACGGACCCATAACGGAGGGCGGGGCGAC
GGACAGCTTTGCGCATCGGTTGCAAACCCAAAGACCACTCACTCTGTCAA
TGGTCTCAGGACTACTGTGCGGCAAGCACAGCATGGGCACATACACAACA
CTTCCAAGAATCATCATATCTTCACAGTAGCCAAACCGACGTACTTCGAA
GTATCTACTGGTGGAACCGCTCCAGTACTCGTACTCGAGTACAGGAACAG
CGCCTGACCCCCAGGTGACACCATGTCGTAGCCGTACATGGTACCAAATG
CCTGCACAGGCGGAGAGCGACTCCCTAACACTTCCAAGAAGCATCATAAG
TAGTAGACAAACCGACATATCTACTTGCGCTACACGAAGTACTGTGGTAC
TGCTCCAGTGCAGGTACTGCTACTACAGTAGTAGGACAGTGCCTGACCCC
CAGGTGACACCACGTCGCAACCGTCTTTGACCAACCGCCTGCACAGGTGG
AGGGTGGCTCCCTCGTGCGCCTGGCCGCCATCAACGGCACCCTGCACCTC
TCGGCGGGGGGGCTGTCGCCCGACCTTCCCACCACAGGGGCAGGGTCCTC
GCCGCCACCACCGCCACCGCCACCTCCGTCATCGTCGTCGCCACTCCCAC
CGCCATCGTCGTCAACGCTCGTGCTGCACGAGGGCTCGGCGGCTTTATCC
TCCGCCCTCGTCAACGTGTTCGCCACGGGGACCCTCCGTTTCAGCGCCGG
GCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3417140..3419842-

>mRNA_S-ischiensis_contig9.20805.1 ID=mRNA_S-ischiensis_contig9.20805.1|Name=mRNA_S-ischiensis_contig9.20805.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1128bp|location=Sequence derived from alignment at S-ischiensis_contig9:3417140..3419842- (Schizocladia ischiensis KU_0333)
TTGTCCCTGTCTGGGCCGTTGGGAGAGGTGAACGTCTCGGCAGTTGTCCC
TGTCTGGGCCGTTGGGAGAGGTGAACGTCTCGGCAGGAAACTCAGTGCTC
GTATCGGCCACTGCAGGCCAGGTCCACCTGGCCGCCGCCGATGCCATTGA
CGGTTTCATCAATGCCACGGCCGGGGCTAAGGTGTCCCTGCAGGCCCCGT
CCTGCAGCCTGTATATGGACAAGGAAGGGGGGGTCAGGGCTGCCGGTGAA
GCAGGGGTATCCCTGTTTGGTGGTGGTGGTGGTGTCGCGAGTGTGGTGGT
CGGGGCTGAGGCGGCGGGGAGGGTGTCGGTCCGGGGAGACGAGGCTGTGG
AGGAAACTCAGTGCTCGTATCGGCCACTGCAGGCCAGGTCCACCTGGCCG
CCGCCGATGCCATTGACGGTTTCATCAATGCCACGGCCGGGGCTAAGGTG
TCCCTGCAGGCCCCGTCCTGCAGCCTGTATATGGACAAGGAAGGGGGGGT
CAGGGCTGCCGGTGAAGCAGGGGTATCCCTGTTTGGTGGTGGTGGTGGTG
TCGCGAGTGTGGTGGTCGGGGCTGAGGCGGCGGGGAGGGTGTCGGTCCGG
GGAGACGAGGCTGTGGAGGTGGAGGGTGGCTCCCTCGTGCGCCTGGCCGC
CATCAACGGCACCCTGCACCTCTCGGCGGGGGGGCTGTCGCCCGACCTTC
CCACCACAGGGGCAGGGTCCTCGCCGCCACCACCGCCACCGCCACCTCCG
TCATCGTCGTCGCCACTCCCACCGCCATCGTCGTCAACGCTCGTGCTGCA
CGAGGGCTCGGCGGCTTTATCCTCCGCCCTCGTCAACGTGTTCGCCACGG
GGACCCTCCGTTTCAGCGCCGGGGTGGAGGGTGGCTCCCTCGTGCGCCTG
GCCGCCATCAACGGCACCCTGCACCTCTCGGCGGGGGGGCTGTCGCCCGA
CCTTCCCACCACAGGGGCAGGGTCCTCGCCGCCACCACCGCCACCGCCAC
CTCCGTCATCGTCGTCGCCACTCCCACCGCCATCGTCGTCAACGCTCGTG
CTGCACGAGGGCTCGGCGGCTTTATCCTCCGCCCTCGTCAACGTGTTCGC
CACGGGGACCCTCCGTTTCAGCGCCGGG
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