mRNA_S-ischiensis_contig9.20732.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20732.1
Unique NamemRNA_S-ischiensis_contig9.20732.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2860876..2865767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size791
Cds size789
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20732.1prot_S-ischiensis_contig9.20732.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2860876..2865767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.563609-CDS-S-ischiensis_contig9:2860875..28611211622817368.563609-CDS-S-ischiensis_contig9:2860875..2861121Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2860876..2861121 -
1695741061.5984507-CDS-S-ischiensis_contig9:2860875..28611211695741061.5984507-CDS-S-ischiensis_contig9:2860875..2861121Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2860876..2861121 -
1622817368.5765848-CDS-S-ischiensis_contig9:2861942..28621011622817368.5765848-CDS-S-ischiensis_contig9:2861942..2862101Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2861943..2862101 -
1695741061.6079965-CDS-S-ischiensis_contig9:2861942..28621011695741061.6079965-CDS-S-ischiensis_contig9:2861942..2862101Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2861943..2862101 -
1622817368.5909076-CDS-S-ischiensis_contig9:2863735..28638321622817368.5909076-CDS-S-ischiensis_contig9:2863735..2863832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2863736..2863832 -
1695741061.6179013-CDS-S-ischiensis_contig9:2863735..28638321695741061.6179013-CDS-S-ischiensis_contig9:2863735..2863832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2863736..2863832 -
1622817368.6058989-CDS-S-ischiensis_contig9:2864974..28650451622817368.6058989-CDS-S-ischiensis_contig9:2864974..2865045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2864975..2865045 -
1695741061.628453-CDS-S-ischiensis_contig9:2864974..28650451695741061.628453-CDS-S-ischiensis_contig9:2864974..2865045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2864975..2865045 -
1622817368.621888-CDS-S-ischiensis_contig9:2865551..28657671622817368.621888-CDS-S-ischiensis_contig9:2865551..2865767Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2865552..2865767 -
1695741061.6400497-CDS-S-ischiensis_contig9:2865551..28657671695741061.6400497-CDS-S-ischiensis_contig9:2865551..2865767Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2865552..2865767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20732.1

>prot_S-ischiensis_contig9.20732.1 ID=prot_S-ischiensis_contig9.20732.1|Name=mRNA_S-ischiensis_contig9.20732.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=263bp
GGGGGGDTDGRRAAVEAEGSRGVQSVRPGQGKVSRGTGSEHGAVRSVLGH
LALGLDKSKRKRQRHLLQDAFKFSANFLDKHTQEGGMLHPGALFFGGGGG
GDGGVATDSNGAGNSAGWETVPGTPRGMEETKAVSPREVLAVVNAMLGAM
ETSLSLGVGQLDPGEEASLFRQLCDLIDFLEGLGESIQPSGARFVPPPLA
PDLSRRRDSSLPELRRRASYSAAAGEGSRGPSKTTNTGGQRKASLALVGG
NTTAEPEGRGGG*
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mRNA from alignment at S-ischiensis_contig9:2860876..2865767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20732.1 ID=mRNA_S-ischiensis_contig9.20732.1|Name=mRNA_S-ischiensis_contig9.20732.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4892bp|location=Sequence derived from alignment at S-ischiensis_contig9:2860876..2865767- (Schizocladia ischiensis KU_0333)
GGCGGCGGCGGCGGGGGGGACACGGACGGGCGCAGGGCTGCCGTCGAGGC
CGAGGGTAGTAGGGGTGTGCAATCGGTGCGCCCGGGGCAAGGCAAGGTGT
CGAGAGGCACGGGATCGGAGCATGGTGCCGTGCGGAGTGTGCTGGGACAC
TTGGCGCTGGGTCTGGACAAGAGCAAGAGGAAGCGGCAACGGCACCTCCT
GCAGGATGCATTCAAGGTGGGAGCGGGAAGTGGCAGTGGTGATGGGGGTG
GTGGTTGTTGTGGTGGTAGAGGGTGGTGGTAGAGCTGGTGGTGGTGTACA
GGTGGTGGTGGTGGTGGCGGTGGTGGTGGTGATGGTGGTGGTGACAGGGG
TGGTGGTGGTGGTGAGTGGTGGTAGTTGTGGTGGTCAGTGGTGGTGGTGA
CCGGTGGTGGTGGTGGTATTGAGTCGGTGGTGGTGGCAGTGGGGTGGTGG
TGGCGATGGCGGTGGTGGTGGTGTTGGTGTTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGGTATTGAGTCGGTGGTGGTGGCGGTGGGGTGGTGGCGGTGG
TGGAGGTGGTGGTGGTGGTGATGGTGCTGGTGGTGGGGTGGTGTGGGATG
TTTTATCATTGTTTATTATGAGTGCTGATGAATTCCACAACCCCCCCCCT
CCCTCCGTGCGCGGTGCCCGACTCTCTCGCGCCCTGCCTCCAATGCCCCC
CCCCCCGCCCCGGCCGATTCAGTTCTCCGCAAACTTCCTGGACAAGCACA
CGCAGGAGGGCGGGATGCTGCATCCGGGAGCGCTATTTTTTGGGTACGAA
GAAGAGTTGAACTGCCCCCTGTCCCTTTCCATTTCCCCTTGTTTGTATTT
TCCTGTTTGCCCTAGCGAGTGAAGACGGGTGAAGGACGGGCTTCTTCCGT
GTTGGGGCCCGGAACCCGCAAGAGTAGGGTCGCCTCGATTGCCCGCTCGC
TTCTTTTCTTCCCGCATAGCAGGGCATGCACAGAGACGTGAGTACTCGTA
CACACGTAAAAGAGTCGCCCCGCGAGTGAAGGCGGTGGAATGACGGGCTT
CCGCATTGGGGCCCGGAACTTGCAAACGTAGGATGACCTCTACTCTATTT
CCCGCTCGCTTCTTTTCTTTCCACATCAAAGAGTTGAACCGTGCAGGATC
TCGTTAACGGCAAAAACTGATCGAGCGTGCTCGGGAAGCCCTGACGGCAA
GCTTTCTGAAGAATACCACGTGTCCGTATCCTGACCGGTCTCGAGACATT
TTTTCCCGCTGGCCAGTTCTAGCCAACGAGCGTTGTCCGTGGGGCTTGCC
TCGCATGTGCCCCAGCTTGCTCTGCCGCCGCGGGGTGAGGCTGCAAATGT
GTGCCGTCGTGCATGCGCGTTGCCTCCTGTCCCCCCACTTTTCTCGTCCA
GGGAGGCTGCACCACGACGGGGTGGGCGCCGTTTTGAGGGCTCTGTGTTG
TTAGGACGGATGGCGCACGCGGTCTGTCTGGGCTCTTGCTTCTTGTACTT
GAAGTACTTGACTCGACCCGTGATGCATGATGGATGCGGCGCGCTGTACC
GTGATTGCTTCTTGTGTTCTGCTTGACTCGTGATACGTGATGGATGCGAT
GCGCTGTAGAGTACCGTGATACAGTACAGTGTGATTTGCCGAGCGGCAGC
GGGAAGACGCCCGAGCAAGCATCGCATCATACCGCATCGCCGTAGAAAAG
ATTGACAGACACCACGGACGGCTCTTCGCATAATTGACCACACGCACGGG
CGGATGTGTTTGTTTGACGCCGTAGGAAGAAGGTCGAGCCGTCCGTGGTG
TGGCCTGCGAGTCACAAAGCTCTTCGCATGATTGAACTTGTGATGAGCAA
ATGTGTGCCTTCATTGCTCCTGCTAGGTTCACCGAACCCCGTGCTTTTCC
CCCTCCTCCCCGCGCCCCCCCCCGCCCACAATCAGCGGCGGCGGCGGCGG
TGATGGGGGTGTGGCGACTGATTCCAACGGGGCTGGGAATTCCGCGGGTT
GGGAGACGGTGCCCGGAACCCCGCGAGGCATGGTGGGTGGCTCGCCCTAT
TTGTGTGAGATGGCTTGCCCCGCTATGTCGCGGTGATGCGATATGGCAGC
GTCATGTGGTGCCTGGATACCGGACTCTAGAGCACACAGCACATCACATC
ACACTACATCACATTACATCACATCACGTACATTCTGCATGTGTCGGAGG
GATCTTGCCACCCCCAGGCGGGTTCATAGAGGGAGGGGGCACTTGTTGCC
GAAAAACTGGTCGGGCTAGCGCTGACGTGGTGTGTCGGTCGCCATATGTC
ATGCCGCGTCATGTCAAACTGCCATGGGTTGGAATACTTAGCTCGCCACT
TATTTACCACTCAAACAAGTGTTGGGCGGAGCCTTTTGGCACGGGGCCTG
GAACTTGCCCCTTATCTACCACTCAAATAAGTATTGTGTCACATGATATC
GAATCGCATCACATCGCATCGCATCGCATCGCGTCGCGTCGCGTCGCACC
ATATCACATCACGAGAGCATGTCTTGCCGATGCCGATCTGTTTCGCCAGA
AAGAGCTCGGAGAATTTCCCCTGGGACCCGGAGGATTTAGTCACTTGAGG
GGGATTCCAGGAAAGTTTTGTAGGCGTTTGCAGTAAATCCAGGGGCGTTC
TTTCTCTGCCTTGCCATCCTGTTCAATATTCCGCGTCTTGGGTGCACAGC
GGATTCTGCGCGGCGGCGATGGTGGCCAGTGGTATTTCAGGTCTTGGCAT
TTTGCCAAAGGCTTTTCCGAGCTGCTGCTTCGATAGTGGCCGCAGTTTAC
CTTGTCACTCACCACCACCTGCAGCTCCTCCTCCTTCCCCTCCTCCTCCT
CCTCCTGCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCTTCCTCCTCCTCCTGCTCCTCCTCCTCCTCTGCTCC
CTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCT
CCCCCTCCTCTCCCTCCCCCTCCCCCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCC
TCCTCCTCCTCCTCCTCCTCCTCTCTCCCCCCTCCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCTCCTCCTCCACCTCCTCCCTCCTCCTCCTCCTCCT
CGTCTTCTCCTCGTCCTCCTCCTCCAGTCCCCCCCTCCCCAATCGCCCTC
CCCCCCCTACCGGTTTGCGATTAACTGGAGGCCAACTTTTGAGGCCAACG
GCGACGTGGTCCGCGCCTCGCCCGCCTTCACTGTTGATGCCCCCGGAGCC
GTGGCAATGTATCATGCACGAACCAAGTCGTTGCCGTTCTGCGAACCGCG
CCCGGCCCCCGAATCGGCGCGATGACGTCGCGGCGTGATGATGTTTTGCG
TTGTGGTGTGCACTACTTAGAGTCCTCTACTGCAGTACTTTTGAGTACGA
GTCGTACTGCCGCACGGTAAGTACACAGCGAGCATGAAGCAACGTACTTA
CTTGCTTACGCAGTTTCGACATCGCATCGCATCGCATCGCATCAACACCG
CATCGCGGCGTCACGCCGCGGCTTCCTTCCCTTTGAAATTCGGCCGTGAT
ACTCTGCGCGCGCCAGGAGGAGACCAAGGCCGTGTCGCCGAGAGAGGTGC
TAGCGGTGGTGAACGCGATGCTGGGGGCGATGGAGACGTCGCTGTCGCTG
GGCGTGGGGCAGCTGGACCCGGGGGAGGAGGCCTCGCTGTTCCGCCAGCT
GTGCGACCTCATCGACTTCTTGGAGGTGTGTGTGTGTGTGCGTCAGTGAT
GGTGTCTCTAGGCAATCAAATCTATTTATCGACAGTGCCGATCTACTCAT
AATATATCTATCGATAGTCGATATGCGATAGTTTGACCCACAGCAAATCC
AAGTAGCTAGTAACGGCATGGGGCACCTGGACGCGGGGGAGGCCTCGCTG
TTCCGCCAGCTGTGCGACCTCATCGACTTCTTGGAGGTGTGTGTGTGTGT
GCGTCAGTGATGGAATATCTAAGCAAATCAATCTATTTATCGACGGTGCC
GATCTACTCATAATATATCTATCGATAGTCGATATTCGATAGTTTGACCC
GCACTAAATCCAAGTACTCGTAGTTAGTAGCGCCGCCCGCAAAATCAGCC
GCGCCCGATAACTATCTACTGACCGATATTCCATCACAGCTGTCCCATGG
CCTGAGCGAGAGCATCCAGCCGTCTGGGGCCCGGTTCGTCTCCCCCCCAT
CGGCGGACCTGTCCCGCAGACGCGATTCTTCGTTACCTCGTACATGCACA
GCAAGCAACTCACGAACAACCCCCCCCCCCCACCCCCCTCCCCAACACAC
ACATACACACACACGCACGCACGCGACCGCACGCGTGCACTCTGTCTGGG
CCTTAGCGAGAGCATCCAGCCGTCCTGGGCCTGGTTCGTCTTCCCCCCGT
CAGCGGACCTACCCCACAGACGCGAATCTTCGATACCCGATCTCGAAGGT
ACATGTACAGCAAGCAACTCACGAGCACCCCCCCCCTTCCTAAACACGCA
CACATGCACGTGCAAAATCGCACACGTGAACTCTGTTCTGTCCCAGGGCC
TTGGCGAGAGCATCCAGCCGTCTGGGGCCCGGTTCGTCCCACCCCCATTG
GCGCCGGACCTGTCCCGCCGACGCGATTCTTCGTTACCTGAACTCCGAAG
GCGTGCGTCCTACTCGGCGGCCGCCGGCGAGGGCAGCCGCGGCCCCTCCA
AGACGACCAACACCGGTGGCCAACGGAAAGCGTCCCTGGCATTGGTCGGT
GGCAACACGACGGCGGAGCCGGAGGGGAGAGGGGGGGGCTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2860876..2865767-

>mRNA_S-ischiensis_contig9.20732.1 ID=mRNA_S-ischiensis_contig9.20732.1|Name=mRNA_S-ischiensis_contig9.20732.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1578bp|location=Sequence derived from alignment at S-ischiensis_contig9:2860876..2865767- (Schizocladia ischiensis KU_0333)
GGCGGCGGCGGCGGGGGGGACACGGACGGGCGCAGGGCTGCCGTCGAGGC
CGAGGGTAGTAGGGGTGTGCAATCGGTGCGCCCGGGGCAAGGCAAGGTGT
CGAGAGGCACGGGATCGGAGCATGGTGCCGTGCGGAGTGTGCTGGGACAC
TTGGCGCTGGGTCTGGACAAGAGCAAGAGGAAGCGGCAACGGCACCTCCT
GCAGGATGCATTCAAGGGCGGCGGCGGCGGGGGGGACACGGACGGGCGCA
GGGCTGCCGTCGAGGCCGAGGGTAGTAGGGGTGTGCAATCGGTGCGCCCG
GGGCAAGGCAAGGTGTCGAGAGGCACGGGATCGGAGCATGGTGCCGTGCG
GAGTGTGCTGGGACACTTGGCGCTGGGTCTGGACAAGAGCAAGAGGAAGC
GGCAACGGCACCTCCTGCAGGATGCATTCAAGTTCTCCGCAAACTTCCTG
GACAAGCACACGCAGGAGGGCGGGATGCTGCATCCGGGAGCGCTATTTTT
TGGTTCTCCGCAAACTTCCTGGACAAGCACACGCAGGAGGGCGGGATGCT
GCATCCGGGAGCGCTATTTTTTGGCGGCGGCGGCGGCGGTGATGGGGGTG
TGGCGACTGATTCCAACGGGGCTGGGAATTCCGCGGGTTGGGAGACGGTG
CCCGGAACCCCGCGAGGCATGCGGCGGCGGCGGCGGTGATGGGGGTGTGG
CGACTGATTCCAACGGGGCTGGGAATTCCGCGGGTTGGGAGACGGTGCCC
GGAACCCCGCGAGGCATGGAGGAGACCAAGGCCGTGTCGCCGAGAGAGGT
GCTAGCGGTGGTGAACGCGATGCTGGGGGCGATGGAGACGTCGCTGTCGC
TGGGCGTGGGGCAGCTGGACCCGGGGGAGGAGGCCTCGCTGTTCCGCCAG
CTGTGCGACCTCATCGACTTCTTGGAGGAGGAGACCAAGGCCGTGTCGCC
GAGAGAGGTGCTAGCGGTGGTGAACGCGATGCTGGGGGCGATGGAGACGT
CGCTGTCGCTGGGCGTGGGGCAGCTGGACCCGGGGGAGGAGGCCTCGCTG
TTCCGCCAGCTGTGCGACCTCATCGACTTCTTGGAGGGCCTTGGCGAGAG
CATCCAGCCGTCTGGGGCCCGGTTCGTCCCACCCCCATTGGCGCCGGACC
TGTCCCGCCGACGCGATTCTTCGTTACCTGAACTCCGAAGGCGTGCGTCC
TACTCGGCGGCCGCCGGCGAGGGCAGCCGCGGCCCCTCCAAGACGACCAA
CACCGGTGGCCAACGGAAAGCGTCCCTGGCATTGGTCGGTGGCAACACGA
CGGCGGAGCCGGAGGGGAGAGGGGGGGGCTAGGGCCTTGGCGAGAGCATC
CAGCCGTCTGGGGCCCGGTTCGTCCCACCCCCATTGGCGCCGGACCTGTC
CCGCCGACGCGATTCTTCGTTACCTGAACTCCGAAGGCGTGCGTCCTACT
CGGCGGCCGCCGGCGAGGGCAGCCGCGGCCCCTCCAAGACGACCAACACC
GGTGGCCAACGGAAAGCGTCCCTGGCATTGGTCGGTGGCAACACGACGGC
GGAGCCGGAGGGGAGAGGGGGGGGCTAG
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