mRNA_S-ischiensis_contig9.20728.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20728.1
Unique NamemRNA_S-ischiensis_contig9.20728.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2855617..2856026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.4575732-CDS-S-ischiensis_contig9:2855616..28557891622817368.4575732-CDS-S-ischiensis_contig9:2855616..2855789Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2855617..2855789 -
1695741061.5323496-CDS-S-ischiensis_contig9:2855616..28557891695741061.5323496-CDS-S-ischiensis_contig9:2855616..2855789Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2855617..2855789 -
1622817368.472553-CDS-S-ischiensis_contig9:2855959..28560261622817368.472553-CDS-S-ischiensis_contig9:2855959..2856026Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2855960..2856026 -
1695741061.5433707-CDS-S-ischiensis_contig9:2855959..28560261695741061.5433707-CDS-S-ischiensis_contig9:2855959..2856026Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2855960..2856026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20728.1prot_S-ischiensis_contig9.20728.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2855617..2856026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20728.1

>prot_S-ischiensis_contig9.20728.1 ID=prot_S-ischiensis_contig9.20728.1|Name=mRNA_S-ischiensis_contig9.20728.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=80bp
GAEEVCAAAAETRDREASASGRGLGADTPLIHPLIVDKHRRGACVPSREG
RGGGWGARPGCRYRWCWQWRWRWWGWGRW*
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mRNA from alignment at S-ischiensis_contig9:2855617..2856026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20728.1 ID=mRNA_S-ischiensis_contig9.20728.1|Name=mRNA_S-ischiensis_contig9.20728.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=410bp|location=Sequence derived from alignment at S-ischiensis_contig9:2855617..2856026- (Schizocladia ischiensis KU_0333)
GGCGCTGAGGAGGTTTGTGCTGCGGCTGCTGAGACGCGTGATCGAGAGGC
CTCCGCCTCGGGGAGGGGTGAGTCGGCCGAGGTTCAATTTGTTGTCCTCG
TACTGCAGTAGCACACGGGGTTGATGCGGCTGCCGGCCCGTCTGCTGGCC
TACCGATCCCTGCATCTGCATCTCCCAACCCCCGGAAGTTCACCCCCCCC
GCCGCCGCCACCGCCGCCGCCGCCGCTCCCTTCGCAGGCCTCGGAGCCGA
CACTCCTCTCATACACCCACTCATCGTGGACAAGCACAGGAGAGGGGCCT
GTGTTCCCTCAAGAGAAGGGAGAGGTGGGGGATGGGGTGCGCGACCCGGG
TGTCGATATCGATGGTGTTGGCAGTGGCGGTGGCGGTGGTGGGGGTGGGG
TCGGTGGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2855617..2856026-

>mRNA_S-ischiensis_contig9.20728.1 ID=mRNA_S-ischiensis_contig9.20728.1|Name=mRNA_S-ischiensis_contig9.20728.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=480bp|location=Sequence derived from alignment at S-ischiensis_contig9:2855617..2856026- (Schizocladia ischiensis KU_0333)
GGCGCTGAGGAGGTTTGTGCTGCGGCTGCTGAGACGCGTGATCGAGAGGC
CTCCGCCTCGGGGAGGGGGCGCTGAGGAGGTTTGTGCTGCGGCTGCTGAG
ACGCGTGATCGAGAGGCCTCCGCCTCGGGGAGGGGCCTCGGAGCCGACAC
TCCTCTCATACACCCACTCATCGTGGACAAGCACAGGAGAGGGGCCTGTG
TTCCCTCAAGAGAAGGGAGAGGTGGGGGATGGGGTGCGCGACCCGGGTGT
CGATATCGATGGTGTTGGCAGTGGCGGTGGCGGTGGTGGGGGTGGGGTCG
GTGGTGAGCCTCGGAGCCGACACTCCTCTCATACACCCACTCATCGTGGA
CAAGCACAGGAGAGGGGCCTGTGTTCCCTCAAGAGAAGGGAGAGGTGGGG
GATGGGGTGCGCGACCCGGGTGTCGATATCGATGGTGTTGGCAGTGGCGG
TGGCGGTGGTGGGGGTGGGGTCGGTGGTGA
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