mRNA_S-ischiensis_contig9.20565.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20565.1
Unique NamemRNA_S-ischiensis_contig9.20565.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1432870..1435274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size547
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.070293-CDS-S-ischiensis_contig9:1432871..14329151622817366.070293-CDS-S-ischiensis_contig9:1432871..1432915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1432872..1432915 -
1695741060.0012898-CDS-S-ischiensis_contig9:1432871..14329151695741060.0012898-CDS-S-ischiensis_contig9:1432871..1432915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1432872..1432915 -
1622817366.0828967-CDS-S-ischiensis_contig9:1434775..14352741622817366.0828967-CDS-S-ischiensis_contig9:1434775..1435274Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1434776..1435274 -
1695741060.0126991-CDS-S-ischiensis_contig9:1434775..14352741695741060.0126991-CDS-S-ischiensis_contig9:1434775..1435274Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1434776..1435274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20565.1prot_S-ischiensis_contig9.20565.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1432872..1435274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20565.1

>prot_S-ischiensis_contig9.20565.1 ID=prot_S-ischiensis_contig9.20565.1|Name=mRNA_S-ischiensis_contig9.20565.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
PPDCSPHGRSALGPARGFLQQDALQSQSTGCMSASTLSSRTTAESGDDDD
LEGDLNLANLATIEAALFGTRQPAAKKRPSPAQAAMAPENSPNLEYAPPP
EEARPPSALQVHDLFYALDLPRPARAGGRGLVRQSGWWGRRRTTSQRMLL
RDVQFSAAAGEMVAIMGASGAGKSTLLDVCA
back to top

mRNA from alignment at S-ischiensis_contig9:1432870..1435274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20565.1 ID=mRNA_S-ischiensis_contig9.20565.1|Name=mRNA_S-ischiensis_contig9.20565.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2405bp|location=Sequence derived from alignment at S-ischiensis_contig9:1432870..1435274- (Schizocladia ischiensis KU_0333)
CCGCCAGATTGCAGCCCTCACGGGCGCTCTGCCTTGGGGCCAGCTCGAGG
CTTCCTCCAGCAGGACGCACTTCAGTCGCAATCGACCGGGTGCATGAGCG
CTTCAACGTTGTCGAGCAGGACCACGGCCGAGTCTGGCGACGACGACGAC
CTCGAAGGGGATCTTAACCTCGCCAACCTTGCCACCATTGAGGCCGCGCT
ATTCGGCACGAGACAGCCTGCCGCTAAGAAACGCCCTAGCCCGGCCCAGG
CAGCCATGGCTCCGGAGAATTCTCCCAATCTCGAGTATGCACCGCCACCG
GAGGAAGCTCGCCCCCCAAGCGCCCTGCAGGTCCATGACTTGTTTTACGC
CCTGGACCTCCCCAGACCGGCGCGCGCCGGCGGGCGGGGCCTTGTGCGAC
AGTCCGGGTGGTGGGGCCGGCGCCGTACCACGTCGCAGCGCATGCTGCTG
CGGGATGTGCAGTTCTCCGCGGCCGCAGGGGAAATGGTCGCCATAATGGG
TGTGTGCGTGTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGCG
TGTGTGTACGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGCGCGCG
CGCGCGCGTGTGTGTGCGTGTGCGTGCGTGCATGCGTGTGTGTGTGGAGC
ATTCTCGTTGTTGTTGCCTCACCGCTGCAGTGCTTTGAAGTTGTTTGGAG
GCCATTGATCTCCGCCCTTGTGCAGTGGAGCAAAGACGCTGACCCATACG
GTAGTCAAGAGGACGGCTGTACCCCAAACTCCTCTCTGAACTACTGTACA
GTACCATGTTTCCTATCGCACTGTCACACCTGTGTCGAATCGACGCTAGA
CCTTAATTTTTGCTCAGAGGTCGGCTGTGTACCGAACCTCGTCGCTAATC
TCCTACTTCGAAGTATCATCTACTGTGCCGTCGCACCCAACCGAGGTTCT
CCCTGCATAGACGCCCATCGTGTAGCAGCGATGGAATACCGATCAGTAGA
TAGTTATGGGGCTCGACTGATTTTGGTGGCACTACTAACTATGTACCAGT
ACTTTGATCTAGCGTTGGTCAAACTATCGCATATCGACTATCGATAGATA
TACAGATCAGCACTGTCGATAAATAGGTTGATTTGCTTAGATGTTCCATC
ACTGTCGTGTTGTGAACCATCACACCCAACAAAGGTGCTCGCTACACTCC
TGTAGTTTTAGAGTGTCGTCACACCTAGCAGAGGTTCTCACTAACTTAAC
CTCCCGCATACGTGCAGTTTCGTGTACTGCCACACCTCACTCACACAGGC
CCATTACTTACAGTACAGGGCTCCACGCCCAGTTGCTTTCCGAACCGGTT
ATTGTAAGTTAGCAGTCACTGGAGCGGCCAACAGCCGGCAACGGTAGGAG
TACGTGCCTGTATTGGCGTACCCGGTGTGACCGGCCGCAGCGGGCCTTGA
AAATTCCACCACAACGTTTTGTGATTTTGTTAAGTAGCAACCTTATGTGT
AGGTGCAGCGTACCTACTTGCCCGCCGCTTCGCGCTACACAGAACCCCCC
CCCCGGCCACCTGAGTCACCCTTCACAGCAGCACAACCCCCCCCCCCCCC
TTAACCCTTTTACGCGTGCTAAATTGGACTTGCATACTAAAACCCTATGA
TTATACGGACCCCAGGGATAGCAGGGTTAGTATACAACCGACGACGCGCA
TTCTAGGCGCCGGTGGTGATGCCCGTCTGCCTCCCGAAAACGGAGCGCCA
CCGCACCGTTGACGCCAGCCAAGCGCAAGCCCCTTTCCCGGGTTGTTCTA
CTTACCTCAGTGGTCAATGGTCTGGGGACTACGGCAGGCACAACATGAGT
ACTTTGTACATATATACCTCAGTCCCACCTGCCGAACGAACGCCGCGTAG
GTATTTTTTCGCCCCCCATGGCGTGGCCACCCGTGTGCGGCAGGCAGTGG
TGGAATATCTACTGAAGCATATCAACTATTTATCGACGGTACTGATCTAT
GTTTTGGTCGATATTCGATACTTTTACCCACCCTAAATCCAAGTAGTTTT
TGGCATGAAGATAAAGAACAAATGGAAAAGAGGAGGTGTTCGTACTTACG
CGAGTTCGGGGCCCCCTGCCCCGGAAGCCCGTCTTTTCACTCACCTTCAC
TCGCAGTAGCTAGTAACGCCACCCACAGAATCAGTCGAGCCCGATAACAT
CTACTGATCGATATCCCATCACTGCCTCATGTCCAATTAGGGTCACCCCT
GTGATGTTGATGGGATGCGATGTGATGTGATGTCAAACTACAGTGAATTA
GGGTGCAAATCACATCACATCACATAATTGCTGATCGATATTTCATCACT
GCGCGGCAGGGGCGTCGGGGGCCGGTAAGTCGACCCTGCTGGACGTGTGC
GCCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1432870..1435274-

>mRNA_S-ischiensis_contig9.20565.1 ID=mRNA_S-ischiensis_contig9.20565.1|Name=mRNA_S-ischiensis_contig9.20565.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig9:1432870..1435274- (Schizocladia ischiensis KU_0333)
CCGCCAGATTGCAGCCCTCACGGGCGCTCTGCCTTGGGGCCAGCTCGAGG
CTTCCTCCAGCAGGACGCACTTCAGTCGCAATCGACCGGGTGCATGAGCG
CTTCAACGTTGTCGAGCAGGACCACGGCCGAGTCTGGCGACGACGACGAC
CTCGAAGGGGATCTTAACCTCGCCAACCTTGCCACCATTGAGGCCGCGCT
ATTCGGCACGAGACAGCCTGCCGCTAAGAAACGCCCTAGCCCGGCCCAGG
CAGCCATGGCTCCGGAGAATTCTCCCAATCTCGAGTATGCACCGCCACCG
GAGGAAGCTCGCCCCCCAAGCGCCCTGCAGGTCCATGACTTGTTTTACGC
CCTGGACCTCCCCAGACCGGCGCGCGCCGGCGGGCGGGGCCTTGTGCGAC
AGTCCGGGTGGTGGGGCCGGCGCCGTACCACGTCGCAGCGCATGCTGCTG
CGGGATGTGCAGTTCTCCGCGGCCGCAGGGGAAATGGTCGCCATAATGGC
CGCCAGATTGCAGCCCTCACGGGCGCTCTGCCTTGGGGCCAGCTCGAGGC
TTCCTCCAGCAGGACGCACTTCAGTCGCAATCGACCGGGTGCATGAGCGC
TTCAACGTTGTCGAGCAGGACCACGGCCGAGTCTGGCGACGACGACGACC
TCGAAGGGGATCTTAACCTCGCCAACCTTGCCACCATTGAGGCCGCGCTA
TTCGGCACGAGACAGCCTGCCGCTAAGAAACGCCCTAGCCCGGCCCAGGC
AGCCATGGCTCCGGAGAATTCTCCCAATCTCGAGTATGCACCGCCACCGG
AGGAAGCTCGCCCCCCAAGCGCCCTGCAGGTCCATGACTTGTTTTACGCC
CTGGACCTCCCCAGACCGGCGCGCGCCGGCGGGCGGGGCCTTGTGCGACA
GTCCGGGTGGTGGGGCCGGCGCCGTACCACGTCGCAGCGCATGCTGCTGC
GGGATGTGCAGTTCTCCGCGGCCGCAGGGGAAATGGTCGCCATAATGGGG
GCGTCGGGGGCCGGTAAGTCGACCCTGCTGGACGTGTGCGCCGGGCGTCG
GGGGCCGGTAAGTCGACCCTGCTGGACGTGTGCGCC
back to top