mRNA_S-ischiensis_contig9.20547.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20547.1
Unique NamemRNA_S-ischiensis_contig9.20547.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1274037..1274978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.573152-CDS-S-ischiensis_contig9:1274036..12740991622817365.573152-CDS-S-ischiensis_contig9:1274036..1274099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1274037..1274099 +
1695741059.6554332-CDS-S-ischiensis_contig9:1274036..12740991695741059.6554332-CDS-S-ischiensis_contig9:1274036..1274099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1274037..1274099 +
1622817365.5845497-CDS-S-ischiensis_contig9:1274824..12749771622817365.5845497-CDS-S-ischiensis_contig9:1274824..1274977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1274825..1274977 +
1695741059.6658118-CDS-S-ischiensis_contig9:1274824..12749771695741059.6658118-CDS-S-ischiensis_contig9:1274824..1274977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1274825..1274977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20547.1prot_S-ischiensis_contig9.20547.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1274037..1274977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20547.1

>prot_S-ischiensis_contig9.20547.1 ID=prot_S-ischiensis_contig9.20547.1|Name=mRNA_S-ischiensis_contig9.20547.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
VEVDDLGRRDQVQHDLEAVAMKLRGRPSLLGRDSVAGEEEEGLAGTGSGG
TTSSSSSRTSHEGARHAKASIT
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mRNA from alignment at S-ischiensis_contig9:1274037..1274978+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20547.1 ID=mRNA_S-ischiensis_contig9.20547.1|Name=mRNA_S-ischiensis_contig9.20547.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig9:1274037..1274978+ (Schizocladia ischiensis KU_0333)
GTGGAGGTGGACGACCTGGGGAGGCGTGATCAGGTGCAGCACGACCTGGA
GGCTGTCGCCATGGTGGGTGGGTGTGATTCATATAAATTGCCCCTTCCCT
TTCCCTGCCCCGCCCAGTTCTTTCTTACTTGTATTTGTTTTCTTCGTGCC
CTGCGAGGGGAAGAAGGGCTTCGTTGAGTCCCGTTTCGGGACGAGCCTTT
TGGCACAGGGTCTGGAACTCGCTGCTTGTCTACCACTCAAATAAATTGCA
ACGAGGTACAATCGCACGTGTGTGAGATTCTACTAGTAGTTGTCCCATTT
TAAAATTGACTATTCTTATATTGATGACGGTGGGTGCTTGCTTTCGGTCG
GAGTGCAATCCGTTCCGGGGGCCGCTGACGCACGCAAGCACTTTTTGGGG
TGCAATACTGCTCCGTCTCGACCGAGGCGCGTGGTCAATGGTCTCGGGAC
TACGGCAAGCACAACGTGAGCACATATAATAGGCAGTCGGCATACCTGCA
CACATGCCCCGAGCGAGTCACGGCACTTTCAAACAGATCGAGAGGTTAGC
CCTTCTGCCCCATGTGTACGCGGAACTTCGCTTGCTGTATTTTAGGGAGT
TGGTATGCGTGCACACCCTCAAAGAGTTAACGGTCAAAGGGTCAAGCACT
CGCAAAAACTTCACCCTTTGGTGCCTCCCACCCCTCCTCCCGCCCCCGCC
CCCTCCCTCCCCCCCTCCTCCTCCTCCTCCTCCTCCCCCCCCTTCTCTTC
CTCCTCCCCCTTCCCCCACCCCCCTGCCGCCTCCGCAGAAGCTCCGCGGC
CGCCCATCCCTTCTGGGCAGGGACTCCGTAGCGGGCGAAGAGGAGGAGGG
ACTGGCGGGCACCGGGTCGGGCGGGACCACCAGCAGCAGCAGCAGCCGAA
CCTCACACGAGGGAGCAAGACATGCGAAGGCGTCCATCACGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1274037..1274978+

>mRNA_S-ischiensis_contig9.20547.1 ID=mRNA_S-ischiensis_contig9.20547.1|Name=mRNA_S-ischiensis_contig9.20547.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig9:1274037..1274978+ (Schizocladia ischiensis KU_0333)
GTGGAGGTGGACGACCTGGGGAGGCGTGATCAGGTGCAGCACGACCTGGA
GGCTGTCGCCATGGTGGAGGTGGACGACCTGGGGAGGCGTGATCAGGTGC
AGCACGACCTGGAGGCTGTCGCCATGAAGCTCCGCGGCCGCCCATCCCTT
CTGGGCAGGGACTCCGTAGCGGGCGAAGAGGAGGAGGGACTGGCGGGCAC
CGGGTCGGGCGGGACCACCAGCAGCAGCAGCAGCCGAACCTCACACGAGG
GAGCAAGACATGCGAAGGCGTCCATCACGAAGCTCCGCGGCCGCCCATCC
CTTCTGGGCAGGGACTCCGTAGCGGGCGAAGAGGAGGAGGGACTGGCGGG
CACCGGGTCGGGCGGGACCACCAGCAGCAGCAGCAGCCGAACCTCACACG
AGGGAGCAAGACATGCGAAGGCGTCCATCACG
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