mRNA_S-ischiensis_contig9.20533.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20533.1
Unique NamemRNA_S-ischiensis_contig9.20533.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1163287..1164346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.3519413-CDS-S-ischiensis_contig9:1163286..11634571622817365.3519413-CDS-S-ischiensis_contig9:1163286..1163457Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1163287..1163457 -
1695741059.5235775-CDS-S-ischiensis_contig9:1163286..11634571695741059.5235775-CDS-S-ischiensis_contig9:1163286..1163457Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1163287..1163457 -
1622817365.3639107-CDS-S-ischiensis_contig9:1164124..11643461622817365.3639107-CDS-S-ischiensis_contig9:1164124..1164346Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1164125..1164346 -
1695741059.5319283-CDS-S-ischiensis_contig9:1164124..11643461695741059.5319283-CDS-S-ischiensis_contig9:1164124..1164346Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1164125..1164346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20533.1prot_S-ischiensis_contig9.20533.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1163287..1164346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20533.1

>prot_S-ischiensis_contig9.20533.1 ID=prot_S-ischiensis_contig9.20533.1|Name=mRNA_S-ischiensis_contig9.20533.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp
MAAGSAGGMGSMAGAGTGTGSRVLAKRSALSNVLRCEWGNACRRGVEATS
KVWPAVGMHTALLLHGEDGQSRGQGLLNLSKYWPSNGTCPGHPEAMRVEL
TVGGQVVGWLTGRFELRMFEGGALPPPGSR*
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mRNA from alignment at S-ischiensis_contig9:1163287..1164346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20533.1 ID=mRNA_S-ischiensis_contig9.20533.1|Name=mRNA_S-ischiensis_contig9.20533.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1060bp|location=Sequence derived from alignment at S-ischiensis_contig9:1163287..1164346- (Schizocladia ischiensis KU_0333)
ATGGCAGCAGGGTCGGCAGGGGGGATGGGGTCGATGGCGGGGGCGGGGAC
CGGGACCGGGAGCCGGGTCTTGGCTAAGAGAAGCGCGCTGTCGAACGTGC
TCCGCTGCGAGTGGGGGAACGCGTGCCGCCGCGGGGTGGAGGCGACGTCC
AAGGTGTGGCCCGCGGTTGGCATGCACACCGCACTGCTGCTGCACGGCGA
GGACGGGCAGAGCCGCGGTCAGGTGAGGGAGGGAGGGAGGCGTTGTTTAG
ATCTCGACATTAGAGAGTGACGAAACAGGGTTTTGTGGGAGGGAGAGTTC
GTACGGTCGTACGGTGTGTTCACTGAGAGTGACGATGCAACGGGCGGCTC
ACGCTCCCGAAGGCCAATTCCGCGTGATCGAGGTTGGCTCGTGCGCCGAC
CAGAGAGGACGCATAGGCGTGTTTGGCGCTGAGCTGACTGGAGCCGCGGA
CCCTGCAGAGCCGCGGTCAGGTGAGGGAGGGAGGAGGGGGGGGGAGGGAA
GGGGGGCAGGCTAGGAGGGGGGGGGGGGGAGAGGAAGGGCGGGAGGGGGG
GTGAGGGAGGGAGGGAGGGAAGGAAGGAGGTGTGGAGGTATGGCGGGAGT
GACAGTGGCACAATTCATGTGTCATCATTGGGATGCGAGAGTTCATGGCC
AAAGTCGCAGGGTAAACCTGAAGTTTGAACTTGGGGCTGTCGGCATTGCA
CGCAAGGTCATGTCGCAAGACAAGACAATGAGTACATATGTATCTTGTCC
TTTCACACACACACACGCACACACATACACACAGGTGGGAAGCAAGCAGC
CCTCCTCCGAACCAACATCAGCAAGTATCCCAACCCGCCGCCGCTCTGCC
CGCCCACCGAATAATAATAATAAAACAACGTGTTATAAGGGCCTGCTGAA
CCTGTCCAAGTACTGGCCGTCGAACGGGACATGCCCGGGCCACCCCGAGG
CCATGAGAGTGGAGCTGACGGTCGGGGGGCAGGTGGTGGGCTGGCTCACG
GGGCGCTTCGAGCTGCGCATGTTTGAGGGGGGCGCTCTGCCGCCGCCGGG
GAGCCGGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1163287..1164346-

>mRNA_S-ischiensis_contig9.20533.1 ID=mRNA_S-ischiensis_contig9.20533.1|Name=mRNA_S-ischiensis_contig9.20533.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig9:1163287..1164346- (Schizocladia ischiensis KU_0333)
ATGGCAGCAGGGTCGGCAGGGGGGATGGGGTCGATGGCGGGGGCGGGGAC
CGGGACCGGGAGCCGGGTCTTGGCTAAGAGAAGCGCGCTGTCGAACGTGC
TCCGCTGCGAGTGGGGGAACGCGTGCCGCCGCGGGGTGGAGGCGACGTCC
AAGGTGTGGCCCGCGGTTGGCATGCACACCGCACTGCTGCTGCACGGCGA
GGACGGGCAGAGCCGCGGTCAGATGGCAGCAGGGTCGGCAGGGGGGATGG
GGTCGATGGCGGGGGCGGGGACCGGGACCGGGAGCCGGGTCTTGGCTAAG
AGAAGCGCGCTGTCGAACGTGCTCCGCTGCGAGTGGGGGAACGCGTGCCG
CCGCGGGGTGGAGGCGACGTCCAAGGTGTGGCCCGCGGTTGGCATGCACA
CCGCACTGCTGCTGCACGGCGAGGACGGGCAGAGCCGCGGTCAGGGCCTG
CTGAACCTGTCCAAGTACTGGCCGTCGAACGGGACATGCCCGGGCCACCC
CGAGGCCATGAGAGTGGAGCTGACGGTCGGGGGGCAGGTGGTGGGCTGGC
TCACGGGGCGCTTCGAGCTGCGCATGTTTGAGGGGGGCGCTCTGCCGCCG
CCGGGGAGCCGGTGAGGCCTGCTGAACCTGTCCAAGTACTGGCCGTCGAA
CGGGACATGCCCGGGCCACCCCGAGGCCATGAGAGTGGAGCTGACGGTCG
GGGGGCAGGTGGTGGGCTGGCTCACGGGGCGCTTCGAGCTGCGCATGTTT
GAGGGGGGCGCTCTGCCGCCGCCGGGGAGCCGGTGA
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