mRNA_S-ischiensis_contig9.20434.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20434.1
Unique NamemRNA_S-ischiensis_contig9.20434.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:423707..424677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.7080755-CDS-S-ischiensis_contig9:423706..4238611622817363.7080755-CDS-S-ischiensis_contig9:423706..423861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 423707..423861 +
1695741058.5055747-CDS-S-ischiensis_contig9:423706..4238611695741058.5055747-CDS-S-ischiensis_contig9:423706..423861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 423707..423861 +
1622817363.7250605-CDS-S-ischiensis_contig9:424576..4246761622817363.7250605-CDS-S-ischiensis_contig9:424576..424676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 424577..424676 +
1695741058.5167706-CDS-S-ischiensis_contig9:424576..4246761695741058.5167706-CDS-S-ischiensis_contig9:424576..424676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 424577..424676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20434.1prot_S-ischiensis_contig9.20434.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 423707..424676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20434.1

>prot_S-ischiensis_contig9.20434.1 ID=prot_S-ischiensis_contig9.20434.1|Name=mRNA_S-ischiensis_contig9.20434.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=85bp
GRGRAGLGCPGRWAGLGPTTATRRLRRRRRRRCPVLVCTMPTAASSRTLP
ISWGTVSLTHPIQVGTGRPPAPTWLLTSAGGGMAG
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mRNA from alignment at S-ischiensis_contig9:423707..424677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20434.1 ID=mRNA_S-ischiensis_contig9.20434.1|Name=mRNA_S-ischiensis_contig9.20434.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=971bp|location=Sequence derived from alignment at S-ischiensis_contig9:423707..424677+ (Schizocladia ischiensis KU_0333)
GGCAGGGGCAGGGCCGGCTTGGGGTGTCCAGGGAGATGGGCAGGTTTGGG
GCCAACAACGGCAACGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGTGCC
CCGTGCTGGTGTGTACGATGCCTACGGCAGCTTCTTCTCGCACCCTCCCC
ATCAGGTGAGAGATGTTACAAGTATCTTTTTGCAAGAAGACAGACAAACG
AGTGGGAAAGAAAAAAGTGTCCCTACGTATTCAGGGCCCCCACCCCCGGA
AGCCCTTCCGTTCACTCGCCTTGAAGGGTTGTACTGAGTATTGTATTGTT
GGGGTTTGGCTCACGAGTGTCGGTTGCTTTTGGGGGGGGGGTGTTTCACC
CTTGGAGGATGACGGTGCGTGTGCATTGTCACTCATGCTGTTGTATATAT
TGCACGGCGCGTTCAATGGGTCATTCGTTCCATATCTCCAATTAATGCAG
AATTTTCTTTCTCCAATGTGGCTGGCTCAGGCCACCCCCGTGAAGTAGCG
CTACAGTAGTAATCCAAGTCCGTCGCCTGCATGGGAGGCTTGGTCGCTTC
TTTTACGAGCCTTCCCGTGTCCCGGCCTCGCAACACCCCGATCGCTGATT
TTTATTATTTGATGTGGTAACCACTAATACGAGAGCACTCAATTCTCAAA
TGGGAGAACCACTAACACGAGAACACTCAATCTGACACACGTGCCATTGT
ACCTCGCTACAATTTACTTCAACGTACTTCATGGATCACCCCGATCGCTG
AGCCCCCCCCCCCCCCCCCCCCCCTCCCCCCACACCCCTTTCTCCCGTGC
ACTGCCGCTCCTCCCATGGGCCACCCCCGCCTATGGATGAACGACCATTT
CCCCGCTGTGCGTGTGGCAGTTGGGGTACGGTTTCCCTCACCCATCCTAT
CCAGGTGGGTACGGGGCGCCCCCCGGCCCCCACCTGGCTGCTCACCAGCG
CGGGGGGGGGTATGGCGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:423707..424677+

>mRNA_S-ischiensis_contig9.20434.1 ID=mRNA_S-ischiensis_contig9.20434.1|Name=mRNA_S-ischiensis_contig9.20434.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=510bp|location=Sequence derived from alignment at S-ischiensis_contig9:423707..424677+ (Schizocladia ischiensis KU_0333)
GGCAGGGGCAGGGCCGGCTTGGGGTGTCCAGGGAGATGGGCAGGTTTGGG
GCCAACAACGGCAACGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGTGCC
CCGTGCTGGTGTGTACGATGCCTACGGCAGCTTCTTCTCGCACCCTCCCC
ATCAGGGCAGGGGCAGGGCCGGCTTGGGGTGTCCAGGGAGATGGGCAGGT
TTGGGGCCAACAACGGCAACGCGGCGGCTGCGGCGGCGGCGGCGGCGGCG
GTGCCCCGTGCTGGTGTGTACGATGCCTACGGCAGCTTCTTCTCGCACCC
TCCCCATCAGTTGGGGTACGGTTTCCCTCACCCATCCTATCCAGGTGGGT
ACGGGGCGCCCCCCGGCCCCCACCTGGCTGCTCACCAGCGCGGGGGGGGG
TATGGCGGGGTTGGGGTACGGTTTCCCTCACCCATCCTATCCAGGTGGGT
ACGGGGCGCCCCCCGGCCCCCACCTGGCTGCTCACCAGCGCGGGGGGGGG
TATGGCGGGG
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