mRNA_S-ischiensis_contig9.20430.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20430.1
Unique NamemRNA_S-ischiensis_contig9.20430.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:414002..417958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.560707-CDS-S-ischiensis_contig9:414001..4141631622817363.560707-CDS-S-ischiensis_contig9:414001..414163Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 414002..414163 +
1695741058.4341748-CDS-S-ischiensis_contig9:414001..4141631695741058.4341748-CDS-S-ischiensis_contig9:414001..414163Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 414002..414163 +
1622817363.571988-CDS-S-ischiensis_contig9:417676..4179581622817363.571988-CDS-S-ischiensis_contig9:417676..417958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 417677..417958 +
1695741058.4471962-CDS-S-ischiensis_contig9:417676..4179581695741058.4471962-CDS-S-ischiensis_contig9:417676..417958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 417677..417958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20430.1prot_S-ischiensis_contig9.20430.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 414002..417958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20430.1

>prot_S-ischiensis_contig9.20430.1 ID=prot_S-ischiensis_contig9.20430.1|Name=mRNA_S-ischiensis_contig9.20430.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
ERHGHCARLRGGAGTDVCSSVLSSSCVGSNAFNVSWASPIQHSATFTGDL
RSEEEEQPRDSTQLLSAQGGRPPLARTAGDNYPTTTTTTTPHHNTQAQSS
NPGGQRRRRAPRSCTGSRTAAAVAVLAAPAAPSVAPPSRHGSGAWIWR
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mRNA from alignment at S-ischiensis_contig9:414002..417958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20430.1 ID=mRNA_S-ischiensis_contig9.20430.1|Name=mRNA_S-ischiensis_contig9.20430.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3957bp|location=Sequence derived from alignment at S-ischiensis_contig9:414002..417958+ (Schizocladia ischiensis KU_0333)
GAGAGACACGGTCACTGTGCACGCCTGAGAGGGGGGGCAGGGACGGATGT
CTGCTCTTCGGTGTTGAGTTCGAGCTGTGTGGGATCGAACGCATTCAACG
TCTCATGGGCCTCACCCATCCAGCACTCAGCAACGTTTACCGGAGACCTC
CGCAGCGAAGAGGTGCGCTCTTACGACCTCTCGAGACTGGTCATCAAATT
TTCGACCGCAAATTTTGCGTGCGATGTGCGTGCCTCCCTCGATGCACCTC
AAACTGCCCCACTGAATCATTTGGCGCTCGGTCCGGTTCGGAGGGCAGGC
CCGCACTTTGCCTTTTTGTCCCGGTGTTTTGCTGCTTTCACGACGCATCG
ATATATCCTCCTCCTAATCTTCTCACGTGCACGAGAGCTGCTGCACCCCC
CGCGCTCCTGCGGAGTGTAAATTGGAAGATCATCACTCGGCACTTGCTGA
CTCCCGTCTTCGGGAATTACTCGGTGCGCATTCGTCGTTCGGAAAAGGCT
GGCTCCGTCTGTACATGTGGTGTTCGCGCGCCGGTGGCTGTGTTCGTGGC
AGCTTGCGGCTCGGGAAGTTTGTACGAGCATCCCCTCACTGAATGGGGCT
GCATCATAGAGCCCTCTTGCACCTCTTTCGTTTTCCAACGAGTAAATACG
CGGTTGTGGCGCATTCCTGCGCCCTAGGCGGTGGGCGGCGGCAGGCGGTA
GGGCTTGAACCGCTCGTGCCTTGTAGAAGCGGGGATGCCGGTTGCGGTGG
TTTTTCGTCTTGCTTCCCTTCGGGTCTGCTGTGGGGGGCATTTGCGTCTG
CTTTATTCAACTAAGTTCCCGGCTCCTTGTCGTGCTCGAGCAGGGAAAAC
CCCCGCAAGTGTATTTACTTTTTCCAAGTGCATGTGTGGCATGCAGGCAA
GAGTGCCTACACTAATGGCCATCGTTATTGAGCTTGGTGCTGTCATATTG
CACCGCCATGGTCTTCCCGCCCTAAATCCCATTTTTGTGCAGTCAAAAAA
CTTTTCCCGGACAAATGTGCTCTTTGAGGACGATGGGACACAAATGTGAT
GGGATACCATGTCAAACTTCAGCAAATTGGACCACACATCGCATCACATC
AGTTTCCCGTCGCCCTCTATGGGTTGAAGACTCTTCGGCGTCCGGGATAG
CTCTCGCAACAGCAAACAGTTGACTCTCCCACAATCACTGCACTTGTAAA
CCCGCGTGGGGGTTTGGGCCGCTTCGGTCTATTTTACTGTGCCCAAGTCT
CGACCGAGGGCTTCCATTACTTTCAGACGCGGAAGGTTTGGTCTGTTTTG
CTCGACCGGCGGACGGCCATGTCCTTATTCTAACCCTCCGAGGACCGACG
TCTGTCGCGTGTGACCAAACTGTACGAGTATGAGTGTGCAGGAAACAAGT
AGTGTGGGATCGAATACATTCACTGTCTTCCTCTCTAAGGTTCACTTGTG
ACCTCTTTCGGCTGCGAGCGACAAGCGTGTCGCTCACAGTTTTCTGAGGA
GTCTACTTCATGCCCTTCTGGGACGGCGGCCGACGAAGCTATCGACATTA
AATGTAGCGTTGGATGGTGTAATGGTGCAGGGAGATGGTGCACTGCTGCA
CAGTGGTGGAATATCGATCAGTAGATAGTTATCGGGCTCGACTGAATTTG
TGGGTGGCGCTACTACCTGCTGCTGAGGTCTCTGTTGACATGGCCTGCAC
CTCGCCGCGTGTTGTTGCTGATAATACCTACGTGAAGTTAGTGTGGGTCA
AACTATCGAATATCAACTACCGATAGATATATAGATCAGTACTGTCGGAA
AATAGGTTGATTTGCTTAGATGCTCCATCACTGCTGCTGCAGGAAGATGG
TGTACATGCTCCCTCGAAGGGTTAACCCTTTTACCGCTGAGGTCCGTATA
ATCATAGGGTTTGTGTGTAAGTCCAATTTAGCAGGGGTAAAAGGGTTGAC
GGTCAAATGCCGCCCCTGCCCTGTTCTGTTGATGACACGTGTCTTTTGTC
TTTTGGCCTGGCTCTCAGTCACATGACGCCAGGTTGCCTTGACGCTGGAA
TTTCTTGTTGCCGCACGCAGCACGAGGTACTGTATACTGTAGTAGTGCTG
GGCCAATGGTCGGTGGCTTGCACAACATGCACAGGACACGGGGTGACCGT
GTCCGACGTGAGTAGTGTACCGCGCTGTTTTGAGTCGGCACGGAAATCGG
CGAGGAGTGCGGGACGAAATCGCAAGCGAAGAACGGACGATGGATATTGA
GAAGATACCGTTCTTTGTTTTTTTTTGCGATAGGAAGAGAAAAGGAGAGA
GTGTGGGAAAGAGTTAAGAGGTGCCTCTGCTCGTGCGAGTTCCGGGCCGC
GACCTAGAAAAGCCCTTCCTTTCACTTGCCTTCACTCGCAGGGCAGATAC
CTACTGTAGGCAGAGAGAGACAAGGGGGAAGGACAGAGGGACATAGTTTG
GTTTGTGGCCGTGCGAGTGATTCCCTACATATATGTATATGTATAACACA
GAGACACTACAATACGCACTTCCAAGTACCACTGTGCTTCAAGTAGTACG
TACTGTACTGTAGCATTAGCAGGAAAAACATAGGGCGATGTGCCCGCCAC
ATCACCAAAGACCTCAACAGTAGCCCTTCCTTAGCTCGCCAGGGAAGGGG
GAGGGGGGGAAGGAGGAGGAGGAGTAGTTCAGTGTGATTTTCACCGCTGC
TGCCTGTTGTTGCCCAAAGCGCATTGATATGCGCATCGGACCCTCTGCCT
ACGGCGGGGCGAATCCCTGTCAGGCCTGCGGTGCTTGCGCTCGCCCGACG
CTTCATCCGTGCCCATGGGCTATTGTAGGTACTTCGAAGTATATGTGGCC
CTTCTGAGGGCCTACTCACCTCTGTTGGCTGTGGTCCTTACCCTGTTCTA
GCAAGTAGTGCTCCAAAGTATGGGGGTTACTACAGAGGGCCCAAGTTTTT
CGCCGAAGTGGCGTGCAATTTGCTGGGCTCGGCCGGCGGTACGGTATTCT
CCGTGCATGCTGTGAAGTATGCGAGTAAGTAAGTATTGCCAGTGCATCGC
CCGTGCGATGGCACCTACTTAAACGGCACAAGGTGGTTGAGCTCGGTGTG
AATTGTGCAGCTATGTTGCAGCAATAATCTTCCTCTGTCTGTTGGTTATC
ATACTCCATACTCTAATGCTCCCTCTGCCCCCCTCTCTACCCATGCTTGT
AGCATAGCACGCGCACACGTGTCTCTCCTCGCCCTCTGCCTCTACCCCCC
TCTCCCGTCCCCCCCGCCGCTTCACTACCTGTCCGTATTGGCACTGTCTC
TCTCCAGTGATGGAATATCAATCAGTAGACAGCTATCGGGCTCGACTGAT
TTGGTGGGTGGCGCTACTAACTACTTGGATTTAGTGTGGGTCAAACTATC
GAATATCGACTATCGATAGACCTTTTCCCTGCCCCGCCCAGTTGCTCGTT
TATTTTTTGTTTTGTTCTTGCCCTGCGAGGCGAAGAAAGGCTTCGTTGAG
TCCCGTTTCGGGATGAGCCTTTTGGCTCGGGGCCTGGAACTTGCCGCTTG
TCTACCACTCAAAATAGATCAATACTGTCGATAAATAGGTTGATTTGCTT
AGATATTCCGTCACTGTCTCTCTCGCACACACTCACCCGTCCTCTCTCCC
TCCTGCTTTACCTCTCTCCCCGCAGGAGGAACAACCTCGTGACAGTACAC
AACTCCTCTCCGCTCAAGGAGGGAGGCCTCCACTTGCCCGCACCGCAGGC
GACAACTACCCCACCACCACCACCACCACCACCCCTCATCACAACACACA
GGCCCAAAGCTCTAACCCGGGGGGCCAGCGCCGGCGCCGTGCTCCCCGCT
CATGTACGGGCAGCCGCACAGCGGCGGCGGTGGCGGTGCTGGCGGCGCCG
GCGGCGCCATCAGTGGCCCCCCCGTCTCGCCACGGGTCGGGGGCATGGAT
ATGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:414002..417958+

>mRNA_S-ischiensis_contig9.20430.1 ID=mRNA_S-ischiensis_contig9.20430.1|Name=mRNA_S-ischiensis_contig9.20430.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig9:414002..417958+ (Schizocladia ischiensis KU_0333)
GAGAGACACGGTCACTGTGCACGCCTGAGAGGGGGGGCAGGGACGGATGT
CTGCTCTTCGGTGTTGAGTTCGAGCTGTGTGGGATCGAACGCATTCAACG
TCTCATGGGCCTCACCCATCCAGCACTCAGCAACGTTTACCGGAGACCTC
CGCAGCGAAGAGGAGAGACACGGTCACTGTGCACGCCTGAGAGGGGGGGC
AGGGACGGATGTCTGCTCTTCGGTGTTGAGTTCGAGCTGTGTGGGATCGA
ACGCATTCAACGTCTCATGGGCCTCACCCATCCAGCACTCAGCAACGTTT
ACCGGAGACCTCCGCAGCGAAGAGGAGGAACAACCTCGTGACAGTACACA
ACTCCTCTCCGCTCAAGGAGGGAGGCCTCCACTTGCCCGCACCGCAGGCG
ACAACTACCCCACCACCACCACCACCACCACCCCTCATCACAACACACAG
GCCCAAAGCTCTAACCCGGGGGGCCAGCGCCGGCGCCGTGCTCCCCGCTC
ATGTACGGGCAGCCGCACAGCGGCGGCGGTGGCGGTGCTGGCGGCGCCGG
CGGCGCCATCAGTGGCCCCCCCGTCTCGCCACGGGTCGGGGGCATGGATA
TGGCGGGAGGAACAACCTCGTGACAGTACACAACTCCTCTCCGCTCAAGG
AGGGAGGCCTCCACTTGCCCGCACCGCAGGCGACAACTACCCCACCACCA
CCACCACCACCACCCCTCATCACAACACACAGGCCCAAAGCTCTAACCCG
GGGGGCCAGCGCCGGCGCCGTGCTCCCCGCTCATGTACGGGCAGCCGCAC
AGCGGCGGCGGTGGCGGTGCTGGCGGCGCCGGCGGCGCCATCAGTGGCCC
CCCCGTCTCGCCACGGGTCGGGGGCATGGATATGGCGG
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