mRNA_S-ischiensis_contig9.20407.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20407.1
Unique NamemRNA_S-ischiensis_contig9.20407.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:240835..241833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.9426363-CDS-S-ischiensis_contig9:240834..2411611622817362.9426363-CDS-S-ischiensis_contig9:240834..241161Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 240835..241161 -
1695741057.987342-CDS-S-ischiensis_contig9:240834..2411611695741057.987342-CDS-S-ischiensis_contig9:240834..241161Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 240835..241161 -
1622817362.956667-CDS-S-ischiensis_contig9:241515..2418331622817362.956667-CDS-S-ischiensis_contig9:241515..241833Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 241516..241833 -
1695741058.0007806-CDS-S-ischiensis_contig9:241515..2418331695741058.0007806-CDS-S-ischiensis_contig9:241515..241833Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 241516..241833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20407.1prot_S-ischiensis_contig9.20407.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 240835..241833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20407.1

>prot_S-ischiensis_contig9.20407.1 ID=prot_S-ischiensis_contig9.20407.1|Name=mRNA_S-ischiensis_contig9.20407.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=215bp
VGPDGGPGSAAPAGPGRGERERERKQRARARRTRARQAGTGTGGAPGPAA
PAAPLAGVWPAAAGTGQPEDTAAGRGPGPGVQVGVEPEAESLSGPGSLRL
GADSFQRDEPGAGQEPERGGSEDGDGEAVDEELAGVLANGGLGLTWSSLV
GDAVGLQWQGPGDGLGGAAAAASESTTPGSGSGSRESCGHGEEEDSESIA
GLTWSSLGWGESAAL
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mRNA from alignment at S-ischiensis_contig9:240835..241833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20407.1 ID=mRNA_S-ischiensis_contig9.20407.1|Name=mRNA_S-ischiensis_contig9.20407.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=999bp|location=Sequence derived from alignment at S-ischiensis_contig9:240835..241833- (Schizocladia ischiensis KU_0333)
GTGGGCCCAGACGGTGGGCCCGGCAGCGCGGCACCGGCAGGCCCGGGCCG
CGGCGAACGCGAACGCGAACGGAAGCAACGGGCCCGGGCACGGCGTACCC
GGGCGCGACAGGCCGGCACAGGTACCGGGGGCGCCCCGGGGCCAGCGGCC
CCGGCTGCACCACTGGCAGGCGTGTGGCCGGCGGCGGCTGGCACGGGCCA
GCCTGAGGACACGGCCGCCGGACGCGGCCCGGGGCCTGGGGTTCAAGTTG
GGGTGGAGCCTGAGGCAGAGAGCCTGAGTGGGCCCGGGAGCCTTAGACTC
GGAGCCGACAGCTTCCAAGTAAGTGAAAGAGTTGATGATGGTTCCCGCCC
GACTCACACTTGTGCGTGGTTTCTATTCGTTCGTGAAAGCTAGACTCTCT
CTCATGTACACTACTCGTACACACGAGCCTGAGACTCGGAGCCGACAGCT
TCCAAGTAAGTGAAAGAGTTACTGAGTGTTCCCGCCTCAACACTTGTGCG
TGGTTTCTATTCATTCGTGAAAGCTAGGCTCTCTCTCATATACGACGTAT
CATACAGTACTCGTACATGAGAAGGAGCAAAGACGAGGATCGTTCGGGTC
CAGGGCATGCACAGAGACGTGAGTACACACACACACACACACACACGGGC
GCTCTCCCTTTCCCTCCCTCAGCGTGACGAGCCCGGGGCCGGGCAAGAGC
CTGAGCGTGGCGGCTCAGAGGATGGTGATGGTGAGGCGGTGGATGAGGAA
CTGGCGGGGGTGCTGGCGAACGGGGGGCTGGGACTGACGTGGTCCTCCTT
GGTGGGGGATGCCGTGGGCCTGCAGTGGCAGGGCCCGGGCGACGGACTTG
GAGGTGCGGCTGCAGCTGCATCGGAATCTACCACGCCCGGATCCGGATCT
GGATCTAGGGAATCTTGCGGCCACGGTGAGGAGGAGGACTCGGAATCGAT
CGCGGGGCTGACGTGGTCGTCCTTGGGGTGGGGGGAGAGCGCGGCACTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:240835..241833-

>mRNA_S-ischiensis_contig9.20407.1 ID=mRNA_S-ischiensis_contig9.20407.1|Name=mRNA_S-ischiensis_contig9.20407.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1290bp|location=Sequence derived from alignment at S-ischiensis_contig9:240835..241833- (Schizocladia ischiensis KU_0333)
GTGGGCCCAGACGGTGGGCCCGGCAGCGCGGCACCGGCAGGCCCGGGCCG
CGGCGAACGCGAACGCGAACGGAAGCAACGGGCCCGGGCACGGCGTACCC
GGGCGCGACAGGCCGGCACAGGTACCGGGGGCGCCCCGGGGCCAGCGGCC
CCGGCTGCACCACTGGCAGGCGTGTGGCCGGCGGCGGCTGGCACGGGCCA
GCCTGAGGACACGGCCGCCGGACGCGGCCCGGGGCCTGGGGTTCAAGTTG
GGGTGGAGCCTGAGGCAGAGAGCCTGAGTGGGCCCGGGAGCCTTAGACTC
GGAGCCGACAGCTTCCAAGTGGGCCCAGACGGTGGGCCCGGCAGCGCGGC
ACCGGCAGGCCCGGGCCGCGGCGAACGCGAACGCGAACGGAAGCAACGGG
CCCGGGCACGGCGTACCCGGGCGCGACAGGCCGGCACAGGTACCGGGGGC
GCCCCGGGGCCAGCGGCCCCGGCTGCACCACTGGCAGGCGTGTGGCCGGC
GGCGGCTGGCACGGGCCAGCCTGAGGACACGGCCGCCGGACGCGGCCCGG
GGCCTGGGGTTCAAGTTGGGGTGGAGCCTGAGGCAGAGAGCCTGAGTGGG
CCCGGGAGCCTTAGACTCGGAGCCGACAGCTTCCAACGTGACGAGCCCGG
GGCCGGGCAAGAGCCTGAGCGTGGCGGCTCAGAGGATGGTGATGGTGAGG
CGGTGGATGAGGAACTGGCGGGGGTGCTGGCGAACGGGGGGCTGGGACTG
ACGTGGTCCTCCTTGGTGGGGGATGCCGTGGGCCTGCAGTGGCAGGGCCC
GGGCGACGGACTTGGAGGTGCGGCTGCAGCTGCATCGGAATCTACCACGC
CCGGATCCGGATCTGGATCTAGGGAATCTTGCGGCCACGGTGAGGAGGAG
GACTCGGAATCGATCGCGGGGCTGACGTGGTCGTCCTTGGGGTGGGGGGA
GAGCGCGGCACTGCGTGACGAGCCCGGGGCCGGGCAAGAGCCTGAGCGTG
GCGGCTCAGAGGATGGTGATGGTGAGGCGGTGGATGAGGAACTGGCGGGG
GTGCTGGCGAACGGGGGGCTGGGACTGACGTGGTCCTCCTTGGTGGGGGA
TGCCGTGGGCCTGCAGTGGCAGGGCCCGGGCGACGGACTTGGAGGTGCGG
CTGCAGCTGCATCGGAATCTACCACGCCCGGATCCGGATCTGGATCTAGG
GAATCTTGCGGCCACGGTGAGGAGGAGGACTCGGAATCGATCGCGGGGCT
GACGTGGTCGTCCTTGGGGTGGGGGGAGAGCGCGGCACTG
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