mRNA_S-ischiensis_contig89.20340.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20340.1
Unique NamemRNA_S-ischiensis_contig89.20340.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2K3MQM8_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQM8_TRIPR)

HSP 1 Score: 276 bits (706), Expect = 1.190e-79
Identity = 159/452 (35.18%), Postives = 258/452 (57.08%), Query Frame = 1
Query:    4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATP-WFGDNRGALQAVTTTGFSGHTKHV 1335
            W +AM  EL+ L   G +     PP+ KP+ +++VYKIKHK+DG++ERYKA LV +G+ Q +G DFF TFSPV  L  +R +LA A+  GW +H LD   A+L+  LQE++++ + DG        + K+ K+LYGLKQ++ KWY++  S ++ EG++ S+ D  L+    +D   A+L+ YVDD    G   +EI R+++ L + ++  DLGV    LG+ +A  + GI + Q+ Y   ++    G L  +  ++PLDP + L    DD +  +  +  Y  ++GKL++L   TRPD+A + ++L      P M H++    V++YL     + + +  N D       IGYSD+DW   ++TRRS TGY        I+W++K+Q  ++ SS+EAE+ A++      ++L  +L ++ +     P  F DN+ AL   +   F   TKH+
Sbjct:  463 WIQAMTSELEALARTGTWKIVDLPPNVKPIGSKWVYKIKHKSDGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRMLLAIASIKGWFLHQLDVNNAFLHGDLQENVYMSIPDGVQCSKPNQVCKLLKSLYGLKQASRKWYEKLTSLLVKEGYTQSSSDHSLFTISQQDNFTALLI-YVDDIILAGTSLQEINRIKNILDTHFKIKDLGVVKYFLGLEVAHSKEGISISQRKYCLDLLHDS-GLLGSKPASTPLDPSVKLH--HDDGKPFE-DISMYRRLVGKLLYLTN-TRPDIAFATQQLSQFLHKPTMTHYKAACRVIRYLKHNPGMGLIFKRNADIQ----LIGYSDADWAGCLDTRRSTTGYCFFVGSSLISWKAKKQTTISKSSSEAEYRALSSATCELVWLLYLLKDLHIECSKQPVLFCDNQSALHIASNPVFHERTKHI 904          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A392MAV7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trifolium medium TaxID=97028 RepID=A0A392MAV7_9FABA)

HSP 1 Score: 265 bits (676), Expect = 7.260e-79
Identity = 157/452 (34.73%), Postives = 252/452 (55.75%), Query Frame = 1
Query:    4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATPW-FGDNRGALQAVTTTGFSGHTKHV 1335
            WQKAM+ EL  L   G +     PP  KP+ +++VYKIK+KADG++ERYKA LV +G+ Q +G DFF TFSPV  L  +R +LA AA   W +H LD   A+L+  LQED+++ + +G        + K+ K+LYGLKQ++ KWY++  S ++ EG+  S  D  L+   S D     LL YVDD    G    E +R++  L + ++  DLGV    LG+ +A    GI + Q+ Y   ++ K  G L  +  T+PLDP + L    +D+ +L   +  Y  ++G+L++L   TRPD++ ++++L      P M H+     V++YL       + ++ + D       +G+SD+DW   I+TRRS TGY        ++W++K+Q  V+ SS+EAE+ A++      I+L  ++ +++M     P  + D++ A+       F   TKH+
Sbjct:   43 WQKAMNDELDALAKTGTWKIVDLPPLTKPIGSKWVYKIKYKADGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRLLLAIAAIKNWNLHQLDVNNAFLHGDLQEDVYMTIPEGVTSPKPNQVCKLLKSLYGLKQASRKWYEKLTSLLIQEGYKQSTADYSLFTLHS-DTNFTALLVYVDDIILAGTSLLEFERIKGILDAHFKIKDLGVLKYFLGLEVAQSREGITVSQRKYCLDLL-KDSGLLASKPATTPLDPAVKL---HNDDGKLYEDISAYRRLIGRLLYLTN-TRPDISFAIQQLSQFLHKPTMVHYNAACRVVRYLKHNPGRGLLFSRHSDLQ----LLGFSDADWAGCIDTRRSTTGYCFFLGSSLVSWKAKKQLTVSRSSSEAEYRALSTATCELIWLLFLMKDLNMHCSKPPVIYCDSQSAMHIAQNPVFHERTKHL 484          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A5N6LRR2_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LRR2_9ASTR)

HSP 1 Score: 269 bits (688), Expect = 3.680e-78
Identity = 163/454 (35.90%), Postives = 252/454 (55.51%), Query Frame = 1
Query:    1 KWQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG--------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQA-TPWFGDNRGALQAVTTTGFSGHTKHV 1335
            KW++AM++E++ L     +S +  P  +KP+ +++VYKIK+K  G VERYKA LV +G+TQ +G D+  TF+PV  L  +R++LA A    W IH LD   A+L+  L+E++++++  G         + ++ K+LYGLKQ++  WY++  +T+   G+  S  D  L+  R++    AV+L YVDD    GD   +IK  +  L   +   DLG     LG+ +A  + GI+L Q+ YT  I+ + MG    R +  P++ G+ L    +D++ +D   Y    ++G+L++L   TRPD+  SV  L    A P   H+     V++YL  TL   I     +        + YSDSDW     TRRS TGY+LL  G P++W+SK+Q  V+ SSAEAE+ AMA  +   ++   +L E+D PQ++ T  F DN  A        F   TKHV
Sbjct:  315 KWREAMEREIRALEQNDTWSLQELPFGKKPIDSKWVYKIKYKPSGEVERYKARLVAKGYTQMEGVDYHDTFAPVAKLVTVRALLALAVKRNWHIHQLDVNNAFLHGDLEEEVYMKIPPGFSSGEKETRVCRLQKSLYGLKQASRNWYQKFTTTLCDMGYKQSVADPSLFIYRTDGVH-AVVLIYVDDVIIVGDDMHKIKETKAELNHRFTIKDLGNLKYFLGIEVARTKDGIVLSQRKYTLDIL-RDMGLEGCRPSAFPMEQGLKLDK-SEDDDRVDAGQY--RRLVGRLLYLQA-TRPDIVYSVNLLSQFVADPRQPHFDAALRVVRYLKTTLGQGI----LLPKEGGLKLVAYSDSDWMGCPFTRRSRTGYLLLLGGAPVSWKSKKQSVVSRSSAEAEYRAMAATVSEILWFRWLLTELDTPQESPTTLFCDNEAARHIANNPVFHERTKHV 758          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A392M7X1_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M7X1_9FABA)

HSP 1 Score: 265 bits (676), Expect = 1.450e-77
Identity = 157/452 (34.73%), Postives = 252/452 (55.75%), Query Frame = 1
Query:    4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATPW-FGDNRGALQAVTTTGFSGHTKHV 1335
            WQKAM+ EL  L   G +     PP  KP+ +++VYKIK+KADG++ERYKA LV +G+ Q +G DFF TFSPV  L  +R +LA AA   W +H LD   A+L+  LQED+++ + +G        + K+ K+LYGLKQ++ KWY++  S ++ EG+  S  D  L+   S D     LL YVDD    G    E +R++  L + ++  DLGV    LG+ +A    GI + Q+ Y   ++ K  G L  +  T+PLDP + L    +D+ +L   +  Y  ++G+L++L   TRPD++ ++++L      P M H+     V++YL       + ++ + D       +G+SD+DW   I+TRRS TGY        ++W++K+Q  V+ SS+EAE+ A++      I+L  ++ +++M     P  + D++ A+       F   TKH+
Sbjct:  232 WQKAMNDELDALAKTGTWKIVDLPPLTKPIGSKWVYKIKYKADGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRLLLAIAAIKNWNLHQLDVNNAFLHGDLQEDVYMTIPEGVTSPKPNQVCKLLKSLYGLKQASRKWYEKLTSLLIQEGYKQSTADYSLFTLHS-DTNFTALLVYVDDIILAGTSLLEFERIKGILDAHFKIKDLGVLKYFLGLEVAQSREGITVSQRKYCLDLL-KDSGLLASKPATTPLDPAVKL---HNDDGKLYEDISAYRRLIGRLLYLTN-TRPDISFAIQQLSQFLHKPTMVHYNAACRVVRYLKHNPGRGLLFSRHSDLQ----LLGFSDADWAGCIDTRRSTTGYCFFLGSSLVSWKAKKQLTVSRSSSEAEYRALSTATCELIWLLFLMKDLNMHCSKPPVIYCDSQSAMHIAQNPVFHERTKHL 673          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2N9I371_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I371_FAGSY)

HSP 1 Score: 261 bits (668), Expect = 6.630e-77
Identity = 162/458 (35.37%), Postives = 252/458 (55.02%), Query Frame = 1
Query:    4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG--------NIV-KVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYP----YANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQ-QATPWFGDNRGALQAVTTTGFSGHTKHV 1335
            W +AM  EL  L     +S +P PP + P+ +++V+K+K ++DGS+ERYKA LV +G+ QQ+G D+F+TFSPV     +RS+LA AA  GWA++ LD   A+L+  L E++++ L  G        NIV K+ K+LYGLKQ++ +W+ +  +T+L  G+  S  D  L+ R+     +A LL YVDD          ++R++  L + ++  DLG     LG+ IA    GI + Q+ Y   I+ +  G L  +    P+D  + LS       +L+  L P    Y  ++G+LM+L  +TRPD+  +V +L      P   H++  QH+LQY+ G     + Y     SN E     +SDSDW    +TRRS TGY +      ++WRSK+Q  V+ SSAEAE+ AMA  +   I+L ++L ++ +    A   F D++ A+       F   TKH+
Sbjct:  122 WCQAMQTELAALEANHTWSLQPLPPGKVPIGSKWVFKVKLRSDGSLERYKARLVAKGYNQQEGFDYFETFSPVAKFVTVRSLLAIAAVKGWALYQLDVNNAFLHGELDEEVYMTLPQGLHSKGEPSNIVCKLTKSLYGLKQASRQWFSKFSATLLNHGFIQSKADYSLFTRQDGSSFIA-LLVYVDDILIASSDAVAVQRLKLFLDAQFKLKDLGPVRYFLGLEIARSSQGISVSQRKYALEIL-EDAGLLGCKPVKCPMDQNLKLS-------KLEGPLLPDPTVYRRLIGRLMYLT-LTRPDIVFAVHKLSQFMEHPREPHYKAAQHILQYIKGAPSQGMFYP----SNSELHIKAFSDSDWAGCPDTRRSTTGYCIFLGHSLVSWRSKKQNIVSRSSAEAEYRAMASAVCEVIWLRSLLHDLQISHPNAALLFSDSQAAIHIAANPVFHERTKHI 565          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A5N6PRR0_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PRR0_9ASTR)

HSP 1 Score: 263 bits (673), Expect = 5.250e-76
Identity = 160/453 (35.32%), Postives = 250/453 (55.19%), Query Frame = 1
Query:    1 KWQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELL-------DGNIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQA-TPWFGDNRGALQAVTTTGFSGHTKHV 1335
            KW +AM +E+Q L     ++ E  P  ++ + +++VYKIK+K +G VERYKA LV RGFTQ +G DF  TF+PV  L  +R++LA A    W IH LD   A+L+  L E++++++        D  + ++ K+LYGLKQ++  WY++  + +LG  +++S  D  L+  R +D  +AVL+ YVDD    G+   +++ ++D L   +   DLG     LG+ +A    G++L Q+ YT  I+ +  G    R ++ P++  + L     +E++       Y  ++G+L++L   TRPD+A SV  L      P   H   +  VL+YL  +    I  +     N     + YSDSDW     TRRS TGY+ L  G PI+W++K+Q  V+ SSAEAE+ AMA  +   I+L  +L E+ +PQ + T  F DN+ A        F   TKHV
Sbjct:  315 KWVEAMKQEIQALEKNNTWTIETLPEGKRAIDSKWVYKIKYKPNGDVERYKARLVARGFTQIEGEDFHDTFAPVAKLVTVRTLLAVATKRNWFIHQLDVNNAFLHGDLDEEVYMKIPHGFLKENDNRVCRLRKSLYGLKQASHNWYQKFTNALLGLSFTTSKADHSLFLYRHKDVFIAVLI-YVDDVIMAGNNLNKMQEVKDRLRDQFSIKDLGPLKYFLGIEVARTSRGLVLSQRKYTLDIL-EDSGMEGCRPSSFPIEQNLKLGI---EEQDPPVDAGRYRRLIGRLLYLQA-TRPDIAYSVNTLSQFVFDPRQSHMEAVTRVLRYLKSSPGQGILLSKEEGEN----LVVYSDSDWLGCPLTRRSRTGYLALLGGAPISWKTKKQSVVSRSSAEAEYRAMATSVSEIIWLRWLLHELGVPQTSPTTLFCDNQAARNIANNPVFHERTKHV 757          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2K3LMF0_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LMF0_TRIPR)

HSP 1 Score: 258 bits (659), Expect = 8.230e-76
Identity = 154/452 (34.07%), Postives = 246/452 (54.42%), Query Frame = 1
Query:    4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG-------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMP-QQATPWFGDNRGALQAVTTTGFSGHTKHV 1335
            W +AM+ EL  L     +     P   KP+  ++VYKIK KADGS++RYKA LV +G+ Q +G DFFQTFSPV  +  +R+VLA A+   W IH LD   A+L+  L+ED++++   G        + K+ K+LYGL+Q++ KWY++    ++  G++    D  L+  +S     +VLL YVDD   TG+  +EI   +  L   +   DLG+    LG+ +A  + GI L Q+ Y   ++T+  G+L  + ++ P+DP   L     D+ E    +  Y  ++GKL++L   TRPD+A  V++L     +P   H++    VL+YL G     + +  N         +G+SD+DWG  I++RRS+TGY        I W+SK+Q  V+ SS+EAE+ A+A       +L  +L ++ +   +    + D++ AL   +   F   TKH+
Sbjct:   97 WIQAMNNELTALAKNNTWIIVDLPDGAKPIGRKWVYKIKRKADGSIDRYKARLVAKGYNQIEGVDFFQTFSPVAKMSTIRTVLAVASIKNWHIHQLDVDNAFLHGDLEEDVYMKAPQGLTGVSANQVCKLKKSLYGLRQASRKWYEKLSQFLITIGYAQMTSDPTLF-TKSTSSDFSVLLVYVDDIVLTGNCMDEIDATKSQLHKAFRIKDLGILKFFLGLEVAHSQQGITLCQRKYCLELLTE-TGTLGCKPSSIPMDPSNRL---HHDDSEPHHDITKYRALVGKLLYLTS-TRPDIAFPVQQLSQFLDAPTSTHFKAAHKVLRYLKGNPGTGLFFPRNSSIQ----LLGFSDADWGGCIDSRRSITGYCFFLGQSLICWKSKKQLTVSKSSSEAEYRALASATCELQWLSYLLRDLQVTTDKLHALYCDSQSALHIASNPVFHERTKHL 538          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 254 bits (650), Expect = 2.020e-75
Identity = 146/454 (32.16%), Postives = 242/454 (53.30%), Query Frame = 1
Query:    4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDGNI--------VKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETG--IILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATPWFGDNRGALQAVTTTGFSGHTKHV 1335
            W++A D E + L     +     P DRKP+ +R+V+K+KH +DG VERYK  LV +G++Q  G D+ +TFSPV     +R++L+ A  +   +H +D   A+LN  L+E+I++E  DG I         K+ K++YGLKQS   W K    ++   G++ S  D C++ R  ++  + +L  YVDD     +  E +  ++  L   Y+  D+G    +LG+ +  D+T   + L Q+ Y ++++ K  G       T+P D  + L   +DD          Y +I+G L++    TRPD+A +V  +    A P   H   ++ +L+YL GT+++ + Y      ++ +  +G+SD+DW  D + RRS TG I L  G  ++W SK+Q  V LS+AEAE+ A++Q  + C +L  +L ++ M    T    DN+GA+           TKH+
Sbjct:   13 WKEAADLEYESLLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQE--LEILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQK-YGMDKANPVTTPADANVKLQ--KDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKY----QRSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDATPTVILEDNQGAIAIAKNPVDHSRTKHI 457          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A453I3S2_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453I3S2_AEGTS)

HSP 1 Score: 258 bits (659), Expect = 2.190e-75
Identity = 150/455 (32.97%), Postives = 251/455 (55.16%), Query Frame = 1
Query:    1 KWQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLEL--------LDGNIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQA--TPWFGDNRGALQAVTTTGFSGHTKHV 1335
            +W  AM +EL+ L  +  +     P  +K V  ++VY +K   +G +ERYKA LV RG++Q  G D+ +TF+PV  ++ +R +++ AA  GW +H LD   A+L+  L+E++++E+         +G + ++ K+LYGLKQS   W+   R  +   G+    KD  ++YR  ++R++ +L  YVDD   TGD G EI R+++ L   +E  DLG     LG+ IA    GI L Q+ +T  +++  MG L+ R  T+P+D    ++A   D  + +     Y  ++G+L++L   TRPD+A +V  +      P   H      +L+YL GT    + +    + N   V  GYSD++W + ++ RRS +GY +   G  ++WRSK+Q  V+ S+AEAE+ AM+QG+   +++ N+L E+ + ++     W  DNR A+           TKH+
Sbjct:  144 RWCAAMREELEALRKQRTWELAELPAGKKTVGCKWVYSVKQNPEGKIERYKARLVARGYSQTYGIDYDETFAPVAKMNTVRILVSCAANFGWPLHQLDVKNAFLHGELKEEVYMEVPPGLDSSKTEGKVCRLKKSLYGLKQSPRAWFDRFRRAMCEMGYKQCNKDHTVFYRH-QNRKIVILAVYVDDIIITGDDGTEIARLKECLGKAFEVKDLGQMKYFLGIEIARSAKGIALSQRKHTLDLLSD-MGMLECRAATTPIDQNHKVTAQSGDLVDKE----KYQRLVGRLLYLCH-TRPDIAYAVSIVSRYMHEPRSGHVEAAHRILKYLKGTPGRGLWF----EGNGHLVVDGYSDANWASCLDDRRSTSGYCVFVGGNLVSWRSKKQPVVSKSTAEAEYRAMSQGLSEMLWVRNLLSELKLLREGPLNVWC-DNRSAICIANNPVQHDRTKHI 586          
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Match: A0A2N9HMY8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HMY8_FAGSY)

HSP 1 Score: 257 bits (657), Expect = 3.530e-75
Identity = 157/451 (34.81%), Postives = 240/451 (53.22%), Query Frame = 1
Query:    4 WQKAMDKELQGLWNKGAFSDEPAPPDRKPVKTRYVYKIKHKADGSVERYKA*LVVRGFTQQQGADFFQTFSPVFGLDVMRSVLAAAACHGWAIHSLDFTQAYLNASLQEDIWLELLDG------NIVKVNKALYGLKQSALKWYKEPRSTILGEGWSSSAKDECLYYRRSEDRRVAVLLTYVDDTAFTGDYGEEIKRMRDTLLSTYEG*DLGVPDQLLGVRIATDETGIILDQQLYTKSIVTKGMGSLDLRITTSPLDPGMDLSA*RDDEEELDCKLYPYANILGKLMFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHYAANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQGAVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQ-ATPWFGDNRGALQAVTTTGFSGHTKHV 1335
            WQ+AM  EL  L     +     PP +  V  ++VYKIK +ADGSVERYKA LV RGFTQ+ G D+ +TF+PV  L  +RS+LA AA   W +  +D   A+LN  L E+++++   G       + ++ +ALYGLKQ+   W+ +  S +  +G++ S+ D  L+ R +    + ++L YVDD   TGD    I  ++  L   +E  DLG     LG+ + +   G  L Q  Y   +++K  G  D +  ++PL+  + L+   D E   D  LY    ++G L++L  +TRPDLA +V  +    ++P   H+  +  +L+Y+ GTL   +H++A            Y+D+DW  D   RRS TGY  L     I+WRSK+Q  V  SS EAE+ A+A      ++L  +L ++  PQ  +TP   DNR A+       F   TKH+
Sbjct:  144 WQQAMADELDALHKTHTWDMTTLPPGKSAVGCKWVYKIKTRADGSVERYKARLVARGFTQEYGIDYEETFAPVARLTSVRSLLAVAAVRHWPLFQMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIRHTSTG-ITLILLYVDDMIITGDDTAGICDLQKFLSQQFEMKDLGTLSYFLGLEVTSSSDGYYLSQAKYASDLLSKA-GLTDSKTVSTPLELNVKLNT-TDGEPLSDATLY--RQLVGSLIYLT-VTRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGTLFHGLHFSAQSSLE----LRAYADADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADATSELLWLRWLLADMGAPQTTSTPIHCDNRSAIHIAHNDVFHERTKHI 584          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3MQM8_TRIPR1.190e-7935.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A392MAV7_9FABA7.260e-7934.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LRR2_9ASTR3.680e-7835.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A392M7X1_9FABA1.450e-7734.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9I371_FAGSY6.630e-7735.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PRR0_9ASTR5.250e-7635.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3LMF0_TRIPR8.230e-7634.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0HFF8_LARCR2.020e-7532.16Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A453I3S2_AEGTS2.190e-7532.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HMY8_FAGSY3.530e-7534.81Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:44255..45691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue4.7e-23
Seed eggNOG ortholog67593.Physo127720
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1438
Cds size591
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.5030208-UTR-S-ischiensis_contig89:44254..451001622817360.5030208-UTR-S-ischiensis_contig89:44254..45100Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 44255..45100 +
1695741055.7840383-UTR-S-ischiensis_contig89:44254..451001695741055.7840383-UTR-S-ischiensis_contig89:44254..45100Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 44255..45100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.5170636-CDS-S-ischiensis_contig89:45100..456911622817360.5170636-CDS-S-ischiensis_contig89:45100..45691Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 45101..45691 +
1695741055.8025746-CDS-S-ischiensis_contig89:45100..456911695741055.8025746-CDS-S-ischiensis_contig89:45100..45691Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 45101..45691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20340.1prot_S-ischiensis_contig89.20340.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 45101..45691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20340.1

>prot_S-ischiensis_contig89.20340.1 ID=prot_S-ischiensis_contig89.20340.1|Name=mRNA_S-ischiensis_contig89.20340.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp
MFLVGMTRPDLASSVRELGHRAASPCMRHWRGLQHVLQYLAGTLHVCIHY
AANMDSNDEQVFIGYSDSDWGNDIETRRSVTGYILLYDGLPIAWRSKQQG
AVTLSSAEAEWTAMAQGMRHCIFLHNILGEIDMPQQATPWFGDNRGALQA
VTTTGFSGHTKHVHEAQVHTRAHGARPLDRPVRANNGATGGHPDQAP
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mRNA from alignment at S-ischiensis_contig89:44255..45691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20340.1 ID=mRNA_S-ischiensis_contig89.20340.1|Name=mRNA_S-ischiensis_contig89.20340.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1437bp|location=Sequence derived from alignment at S-ischiensis_contig89:44255..45691+ (Schizocladia ischiensis KU_0333)
AAGTGGCAGAAGGCGATGGATAAGGAGTTGCAAGGCCTGTGGAACAAGGG CGCCTTCAGCGACGAGCCTGCACCGCCGGACCGGAAGCCAGTCAAGACCC GCTACGTGTACAAGATCAAGCACAAGGCGGATGGGAGCGTGGAGAGGTAC AAGGCATGACTCGTGGTGAGAGGCTTCACTCAGCAACAAGGCGCGGACTT CTTCCAGACCTTCAGCCCCGTGTTTGGCCTTGACGTGATGCGGTCGGTCT TGGCCGCTGCTGCGTGTCACGGATGGGCCATTCACTCCCTGGACTTCACC CAAGCGTACCTGAATGCATCTCTTCAAGAAGACATCTGGCTCGAGCTACT GGACGGGAACATCGTCAAGGTGAACAAGGCCCTCTATGGCTTGAAGCAAT CTGCTCTGAAGTGGTACAAGGAACCACGGAGCACAATCCTGGGGGAGGGC TGGAGCAGCAGCGCCAAAGACGAGTGTCTCTACTACCGCCGGAGCGAGGA CAGGCGTGTTGCCGTACTACTGACGTATGTCGACGACACTGCCTTCACCG GTGACTACGGTGAGGAGATCAAGAGAATGCGGGACACACTGCTCTCTACG TACGAGGGGTGAGACTTGGGCGTACCTGATCAACTGCTGGGAGTGCGGAT TGCCACGGACGAGACAGGAATCATCCTGGATCAGCAACTGTACACCAAGA GCATCGTCACCAAGGGCATGGGATCTCTGGACCTGCGGATCACAACTTCA CCGCTCGACCCTGGCATGGACCTGTCTGCGTGACGTGACGACGAGGAGGA GCTGGACTGCAAGCTGTATCCGTATGCTAACATCCTGGGCAAGCTCATGT TCCTGGTGGGGATGACTCGGCCCGACCTGGCCAGCAGTGTGCGGGAGCTT GGGCACCGTGCAGCGTCCCCGTGCATGAGACACTGGCGTGGACTGCAACA TGTGCTACAGTATCTCGCCGGAACACTGCACGTGTGCATCCACTACGCGG CCAACATGGACAGCAACGACGAGCAAGTCTTCATCGGCTACTCGGACTCC GACTGGGGCAATGACATCGAAACGCGACGGAGTGTGACGGGGTACATCCT ACTCTACGACGGATTGCCAATTGCGTGGCGGTCCAAGCAGCAAGGCGCCG TCACTCTGTCGAGCGCGGAGGCAGAGTGGACGGCGATGGCACAAGGAATG CGGCACTGCATTTTCCTCCACAACATACTGGGGGAGATTGACATGCCGCA ACAAGCTACACCGTGGTTTGGGGACAATCGGGGTGCACTCCAAGCGGTGA CTACCACCGGCTTCAGCGGACACACCAAGCATGTGCATGAAGCTCAAGTG CACACGCGAGCACATGGAGCACGGCCTCTTGACCGTCCAGTACGTGCCAA CAACGGAGCAACTGGCGGACATCCTGACCAAGCACCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:44255..45691+

>mRNA_S-ischiensis_contig89.20340.1 ID=mRNA_S-ischiensis_contig89.20340.1|Name=mRNA_S-ischiensis_contig89.20340.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig89:44255..45691+ (Schizocladia ischiensis KU_0333)
ATGTTCCTGGTGGGGATGACTCGGCCCGACCTGGCCAGCAGTGTGCGGGA
GCTTGGGCACCGTGCAGCGTCCCCGTGCATGAGACACTGGCGTGGACTGC
AACATGTGCTACAGTATCTCGCCGGAACACTGCACGTGTGCATCCACTAC
GCGGCCAACATGGACAGCAACGACGAGCAAGTCTTCATCGGCTACTCGGA
CTCCGACTGGGGCAATGACATCGAAACGCGACGGAGTGTGACGGGGTACA
TCCTACTCTACGACGGATTGCCAATTGCGTGGCGGTCCAAGCAGCAAGGC
GCCGTCACTCTGTCGAGCGCGGAGGCAGAGTGGACGGCGATGGCACAAGG
AATGCGGCACTGCATTTTCCTCCACAACATACTGGGGGAGATTGACATGC
CGCAACAAGCTACACCGTGGTTTGGGGACAATCGGGGTGCACTCCAAGCG
GTGACTACCACCGGCTTCAGCGGACACACCAAGCATGTGCATGAAGCTCA
AGTGCACACGCGAGCACATGGAGCACGGCCTCTTGACCGTCCAGTACGTG
CCAACAACGGAGCAACTGGCGGACATCCTGACCAAGCACCTATGTTCCTG
GTGGGGATGACTCGGCCCGACCTGGCCAGCAGTGTGCGGGAGCTTGGGCA
CCGTGCAGCGTCCCCGTGCATGAGACACTGGCGTGGACTGCAACATGTGC
TACAGTATCTCGCCGGAACACTGCACGTGTGCATCCACTACGCGGCCAAC
ATGGACAGCAACGACGAGCAAGTCTTCATCGGCTACTCGGACTCCGACTG
GGGCAATGACATCGAAACGCGACGGAGTGTGACGGGGTACATCCTACTCT
ACGACGGATTGCCAATTGCGTGGCGGTCCAAGCAGCAAGGCGCCGTCACT
CTGTCGAGCGCGGAGGCAGAGTGGACGGCGATGGCACAAGGAATGCGGCA
CTGCATTTTCCTCCACAACATACTGGGGGAGATTGACATGCCGCAACAAG
CTACACCGTGGTTTGGGGACAATCGGGGTGCACTCCAAGCGGTGACTACC
ACCGGCTTCAGCGGACACACCAAGCATGTGCATGAAGCTCAAGTGCACAC
GCGAGCACATGGAGCACGGCCTCTTGACCGTCCAGTACGTGCCAACAACG
GAGCAACTGGCGGACATCCTGACCAAGCACCT
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