mRNA_S-ischiensis_contig87.20264.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20264.1
Unique NamemRNA_S-ischiensis_contig87.20264.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:363507..364542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.1006799-CDS-S-ischiensis_contig87:363506..3635601622817354.1006799-CDS-S-ischiensis_contig87:363506..363560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 363507..363560 -
1695741050.8743775-CDS-S-ischiensis_contig87:363506..3635601695741050.8743775-CDS-S-ischiensis_contig87:363506..363560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 363507..363560 -
1622817354.1129715-CDS-S-ischiensis_contig87:364335..3645421622817354.1129715-CDS-S-ischiensis_contig87:364335..364542Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 364336..364542 -
1695741050.888302-CDS-S-ischiensis_contig87:364335..3645421695741050.888302-CDS-S-ischiensis_contig87:364335..364542Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 364336..364542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20264.1prot_S-ischiensis_contig87.20264.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 363507..364542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20264.1

>prot_S-ischiensis_contig87.20264.1 ID=prot_S-ischiensis_contig87.20264.1|Name=mRNA_S-ischiensis_contig87.20264.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=87bp
LAPEATGFNEDKQAFVASSDDCVVGVFRGTELGGDETNSGLSDWVTNLKF
WKTRFVSNDGTKTMGKLRSGFNEALDTVWDEMEGKPG
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mRNA from alignment at S-ischiensis_contig87:363507..364542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20264.1 ID=mRNA_S-ischiensis_contig87.20264.1|Name=mRNA_S-ischiensis_contig87.20264.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1036bp|location=Sequence derived from alignment at S-ischiensis_contig87:363507..364542- (Schizocladia ischiensis KU_0333)
CTGGCTCCCGAGGCAACGGGTTTCAATGAAGACAAGCAGGCGTTTGTGGC
ATCCTCGGATGACTGCGTGGTTGGGGTGTTCCGCGGGACCGAGCTGGGTG
GCGACGAGACCAACTCGGGTTTGTCTGACTGGGTGACCAATCTGAAGTTC
TGGAAGACCCGCTTTGTTTCCAACGACGGGACCAAGACAATGGGGAAGCT
ACGCTCGGTGAGGGAGGAGGGAGGAAGAGATGCAGGGACGGTGGGTGGGA
GGGAAGGAGTACTGTGCTTGTACGAGTACTCAACATTGATCCATGTACTG
CACGAGTCCTGTAGTGTAGTAGTGCTCCGCCTCGAACGAGGTGCGGGGTC
AATGGTGTCGGGACTACGGCAAGCACTACGTGAGTACATATATACAGTAC
AGTAGTTAGTACCTCCAAATGCTTGCGCAAGTATTTCCAAGTACTTCCAA
GCACTGATTTTACTACTCGTACTGCAGTGCAGTAGTACTCTGCTGGAACT
TACTTCAAAACACATGAGATTGGATTATGCATTTAAGTGTACGAGCAATG
CACCTACTTGGTACCCACATTGCAGCGTGTCGAGCACGTACACGGAGGTA
CTGTCATGTACTGTACTGAATTCACACTTGCCCTTTCCATTGAAAATGCA
AACACGTCAGGTACTGTCCTGTCCTGTACTGAATTCACACTTACCCTTTC
CATTGACCATTAAAACACGCCAGTACCAGTGGATGCGCACACTGTCTACG
CTAACCTTAACACCAACTACACCAGCTTGCGCACGCACGCCAGCCAGTGG
TGCTGCCACCAACTCCACATGGACCGCCAACACACTATAACACACTACTC
GGGTACTCGTACAGTGTACACTAGCTTGCGTACGCACACCAACCAGTGCT
GCGGCCACTACCTCCACATGGGCCGCCACCACACTACAACACATACAGTG
TCCTCACGATCACCTTGTGACATGACATGCAGGGCTTCAATGAGGCCCTT
GACACCGTGTGGGACGAAATGGAAGGCAAGCCTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:363507..364542-

>mRNA_S-ischiensis_contig87.20264.1 ID=mRNA_S-ischiensis_contig87.20264.1|Name=mRNA_S-ischiensis_contig87.20264.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=522bp|location=Sequence derived from alignment at S-ischiensis_contig87:363507..364542- (Schizocladia ischiensis KU_0333)
CTGGCTCCCGAGGCAACGGGTTTCAATGAAGACAAGCAGGCGTTTGTGGC
ATCCTCGGATGACTGCGTGGTTGGGGTGTTCCGCGGGACCGAGCTGGGTG
GCGACGAGACCAACTCGGGTTTGTCTGACTGGGTGACCAATCTGAAGTTC
TGGAAGACCCGCTTTGTTTCCAACGACGGGACCAAGACAATGGGGAAGCT
ACGCTCGCTGGCTCCCGAGGCAACGGGTTTCAATGAAGACAAGCAGGCGT
TTGTGGCATCCTCGGATGACTGCGTGGTTGGGGTGTTCCGCGGGACCGAG
CTGGGTGGCGACGAGACCAACTCGGGTTTGTCTGACTGGGTGACCAATCT
GAAGTTCTGGAAGACCCGCTTTGTTTCCAACGACGGGACCAAGACAATGG
GGAAGCTACGCTCGGGCTTCAATGAGGCCCTTGACACCGTGTGGGACGAA
ATGGAAGGCAAGCCTGGCGGCTTCAATGAGGCCCTTGACACCGTGTGGGA
CGAAATGGAAGGCAAGCCTGGC
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