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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 1 |
| Model size | 1037 |
| Cds size | 630 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817350.844725-UTR-S-ischiensis_contig87:344241..344481 | 1622817350.844725-UTR-S-ischiensis_contig87:344241..344481 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 344242..344481 + |
| 1695741048.1090777-UTR-S-ischiensis_contig87:344241..344481 | 1695741048.1090777-UTR-S-ischiensis_contig87:344241..344481 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 344242..344481 + |
| 1622817350.8675401-UTR-S-ischiensis_contig87:345111..345278 | 1622817350.8675401-UTR-S-ischiensis_contig87:345111..345278 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 345112..345278 + |
| 1695741048.1387305-UTR-S-ischiensis_contig87:345111..345278 | 1695741048.1387305-UTR-S-ischiensis_contig87:345111..345278 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig87 345112..345278 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817350.8561153-CDS-S-ischiensis_contig87:344481..345111 | 1622817350.8561153-CDS-S-ischiensis_contig87:344481..345111 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 344482..345111 + |
| 1695741048.1214354-CDS-S-ischiensis_contig87:344481..345111 | 1695741048.1214354-CDS-S-ischiensis_contig87:344481..345111 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig87 344482..345111 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig87.20260.1 >prot_S-ischiensis_contig87.20260.1 ID=prot_S-ischiensis_contig87.20260.1|Name=mRNA_S-ischiensis_contig87.20260.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=210bp
MRRTGILLAPRGTSNGMQMQYCQYMESHPLRTKRCAPPKCVGPSRVLGAD
QSRRSSGTTWPMPVQRPALESYRPELQGEKIRLSPRYVQREKQEPYISQS
KLAVRKTRSWGGVAPTHLVALCFATKGYINARANPAGRGVGSSLVIYCTE
LCDTCIAHFQYSKTNYAPTMSCALEYSTSGVFHRIVQLYFSYSRLQHTCR
PAIPSRPSL* back to topmRNA from alignment at S-ischiensis_contig87:344242..345278+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig87.20260.1 ID=mRNA_S-ischiensis_contig87.20260.1|Name=mRNA_S-ischiensis_contig87.20260.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1037bp|location=Sequence derived from alignment at S-ischiensis_contig87:344242..345278+ (Schizocladia ischiensis KU_0333)
ACTCGTAGAGGTACAACCAGTGGATTCATCCATCAAGCTACTTGTACTGC
AGCGCTCGCACTGTAGAGCATGCATACTCACCAAACCCTCAACACTTGTA
AGTGCTGTGTGCATCCAAAAAAACGCACGCGCTAACCACCTGGTGTCTCG
CAAAGCCAAGCCACTGCATGCAGTAAGTCCGTGTATGCAATACAAGTACT
GCATAGTTTTCATCAAACCCCACTGGGCAACCAGAACAGCATGCGGCGCA
CTGGCATACTACTAGCACCTCGAGGTACTTCAAATGGCATGCAGATGCAG
TACTGTCAGTACATGGAATCCCATCCATTACGGACGAAACGATGCGCGCC
ACCAAAATGTGTCGGGCCGAGCCGGGTTCTGGGCGCTGACCAATCGCGCC
GTAGCTCGGGGACTACTTGGCCAATGCCGGTTCAGAGACCGGCGCTAGAA
AGCTACCGACCAGAGCTACAAGGGGAAAAAATCCGTTTGTCGCCACGTTA
CGTACAGCGTGAGAAACAAGAACCCTACATTTCCCAGTCTAAATTGGCTG
TAAGAAAAACCCGATCTTGGGGTGGCGTCGCCCCCACGCATCTCGTAGCT
CTTTGTTTTGCGACGAAGGGTTACATAAACGCGAGGGCGAACCCGGCGGG
CCGGGGGGTGGGATCGTCCCTAGTGATCTACTGCACTGAACTGTGCGATA
CTTGCATCGCGCATTTCCAGTACAGTAAGACAAACTACGCTCCCACCATG
TCATGCGCACTCGAGTACTCTACTTCCGGAGTATTCCATCGCATCGTACA
GTTATACTTCAGCTACAGTCGGCTACAACACACCTGCAGGCCGGCCATCC
CAAGTAGGCCCAGCCTGTGAGTGACTACATCATGCAGTACTTGCAAGTAT
GAATGCACTCATTGGCACACTTGCCTTAGTCACCTAACCTTGCGTGCTTA
CTCGTAGTCGACATCTCTACACCACTAGTAAGTCGAAACTTCGGGTCTGT
ACTCCGGCAGGAGCACCTACTCAACGGTGGACTCTCT back to topCoding sequence (CDS) from alignment at S-ischiensis_contig87:344242..345278+ >mRNA_S-ischiensis_contig87.20260.1 ID=mRNA_S-ischiensis_contig87.20260.1|Name=mRNA_S-ischiensis_contig87.20260.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1260bp|location=Sequence derived from alignment at S-ischiensis_contig87:344242..345278+ (Schizocladia ischiensis KU_0333)
ATGCGGCGCACTGGCATACTACTAGCACCTCGAGGTACTTCAAATGGCAT
GCAGATGCAGTACTGTCAGTACATGGAATCCCATCCATTACGGACGAAAC
GATGCGCGCCACCAAAATGTGTCGGGCCGAGCCGGGTTCTGGGCGCTGAC
CAATCGCGCCGTAGCTCGGGGACTACTTGGCCAATGCCGGTTCAGAGACC
GGCGCTAGAAAGCTACCGACCAGAGCTACAAGGGGAAAAAATCCGTTTGT
CGCCACGTTACGTACAGCGTGAGAAACAAGAACCCTACATTTCCCAGTCT
AAATTGGCTGTAAGAAAAACCCGATCTTGGGGTGGCGTCGCCCCCACGCA
TCTCGTAGCTCTTTGTTTTGCGACGAAGGGTTACATAAACGCGAGGGCGA
ACCCGGCGGGCCGGGGGGTGGGATCGTCCCTAGTGATCTACTGCACTGAA
CTGTGCGATACTTGCATCGCGCATTTCCAGTACAGTAAGACAAACTACGC
TCCCACCATGTCATGCGCACTCGAGTACTCTACTTCCGGAGTATTCCATC
GCATCGTACAGTTATACTTCAGCTACAGTCGGCTACAACACACCTGCAGG
CCGGCCATCCCAAGTAGGCCCAGCCTGTGAATGCGGCGCACTGGCATACT
ACTAGCACCTCGAGGTACTTCAAATGGCATGCAGATGCAGTACTGTCAGT
ACATGGAATCCCATCCATTACGGACGAAACGATGCGCGCCACCAAAATGT
GTCGGGCCGAGCCGGGTTCTGGGCGCTGACCAATCGCGCCGTAGCTCGGG
GACTACTTGGCCAATGCCGGTTCAGAGACCGGCGCTAGAAAGCTACCGAC
CAGAGCTACAAGGGGAAAAAATCCGTTTGTCGCCACGTTACGTACAGCGT
GAGAAACAAGAACCCTACATTTCCCAGTCTAAATTGGCTGTAAGAAAAAC
CCGATCTTGGGGTGGCGTCGCCCCCACGCATCTCGTAGCTCTTTGTTTTG
CGACGAAGGGTTACATAAACGCGAGGGCGAACCCGGCGGGCCGGGGGGTG
GGATCGTCCCTAGTGATCTACTGCACTGAACTGTGCGATACTTGCATCGC
GCATTTCCAGTACAGTAAGACAAACTACGCTCCCACCATGTCATGCGCAC
TCGAGTACTCTACTTCCGGAGTATTCCATCGCATCGTACAGTTATACTTC
AGCTACAGTCGGCTACAACACACCTGCAGGCCGGCCATCCCAAGTAGGCC
CAGCCTGTGA back to top
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