mRNA_S-ischiensis_contig86.20186.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20186.1
Unique NamemRNA_S-ischiensis_contig86.20186.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:110675..112968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20186.1prot_S-ischiensis_contig86.20186.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 110675..112940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.5260804-CDS-S-ischiensis_contig86:110674..1108101622817345.5260804-CDS-S-ischiensis_contig86:110674..110810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 110675..110810 -
1695741044.239592-CDS-S-ischiensis_contig86:110674..1108101695741044.239592-CDS-S-ischiensis_contig86:110674..110810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 110675..110810 -
1622817345.541166-CDS-S-ischiensis_contig86:112875..1129401622817345.541166-CDS-S-ischiensis_contig86:112875..112940Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 112876..112940 -
1695741044.2509587-CDS-S-ischiensis_contig86:112875..1129401695741044.2509587-CDS-S-ischiensis_contig86:112875..112940Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 112876..112940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.553694-UTR-S-ischiensis_contig86:112940..1129681622817345.553694-UTR-S-ischiensis_contig86:112940..112968Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 112941..112968 -
1695741044.2652876-UTR-S-ischiensis_contig86:112940..1129681695741044.2652876-UTR-S-ischiensis_contig86:112940..112968Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 112941..112968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20186.1

>prot_S-ischiensis_contig86.20186.1 ID=prot_S-ischiensis_contig86.20186.1|Name=mRNA_S-ischiensis_contig86.20186.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
MASSAGKKSLEAGVGGTLSVSSCAPTTPSEAGCSANSGSGAYEPPQHHHH
HAHSSAAASVAAAAAAA
back to top

mRNA from alignment at S-ischiensis_contig86:110675..112968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20186.1 ID=mRNA_S-ischiensis_contig86.20186.1|Name=mRNA_S-ischiensis_contig86.20186.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2294bp|location=Sequence derived from alignment at S-ischiensis_contig86:110675..112968- (Schizocladia ischiensis KU_0333)
GGAGCAACTGGCAGGCCAGCGTGGGCTCATGGCGTCGTCTGCGGGAAAGA
AATCCCTCGAGGCGGGGGTTGGTGGCACCCTATCGGTCTCCAGGTAGGTG
TTATTGGGGTATCAGGGCCGCTTGATGTGCGATACCCGTCGCGGCGGGGC
TCCGCGGGCGCTCCAAAGTGGAGCCTGCGCAGTTTTGAAATCGGAGATGG
GTGTGGACGCCACAGGCATCTGTGCAATTCGACAAAGGCATTATAAGGCA
GGCACATTGAACTCCTCTGAGTTGCGAAAAAAAGAAGATGAAAAGAAACT
TACTATGTACTAGTAGTAGTACCTGTGCAGCGACCCCCTGCACGCGGTTC
GGTACCAGCCCAAGGGCAAACAACAAACAACTAGGACATGGCTATGTCGG
TACGGTATCGGTCCACCGGCCCCCAGAAACACCGGCCGTTGCTCTACTTA
GCCAGTTTCCCTCTTGTCTCCTTGCAATCTGTGCCCACGCTGTAACCGCT
TGGCCAGCATCTTTTTTTCTCCTGTGTGCGTGGAAATATATCTGGATCCG
TTGTACTTATTGCCGCGAAGACAAAACCCAGAGACAGTATCAACATGCCG
ACACCCTTCCTCCAAGTTCGGGTTCAAACAACACTGCCGCGGAAATGGGC
CCCTTCACGCTTCTCTATTTAGGCGCCGTTTACGATCCCCGGTCCCCAAT
CCTATTCCCGTCCTATTGTTGGCCTGTTGAGGAGAGCCGTCACCGGTCGT
TTCGGTGACCCGGAATAGGAGTGAGCGTCGAGGGTGCTTCATGACACCCC
CTGCCCTCGATGTGCACCGGCCCAACGGTCCCCGATATCGCCGGGCGCCG
TACATTCGAGCAAGCGAAATCGGATCGGATCGGAATTTATATAGGACCGA
ACAGTGCACCTCAAGAGGTGTCCCTATTGTAGGAAATGGGATTTTTTTGT
GTTGCGCCATCCTATGTTGTATTGAACCCGCCTCGGGGATTCGTGACCGT
GCCGGTCCTATTTTGGCCTATAAATTTCCTAGATCTCCTTCGAAGCACAA
GCATAAGATCGGGGGATCGTAAACCGGGCGTTCACGCATGTAAATTGCAA
CGAGGTACAATCGCATGTGTGTGCGATTGACTGTTCTCGATATTAGTAGT
TGTTTCGTTTAAGCATTGGATGTTCTTATATTAGTGATTATCACATCGCA
AACGGGGCCTTGATTTTGTACATAGTTGAGCAGCGTGACCTTTCTTGGTG
GCCTTGCGACGACCTTTCGGATTCTTCCACAAGATTTTGCTCTGTTGATG
AAAACCGCTGCCGAGGTCGCGAGGACAATGGTCTCAGGGCTGCGGCAAGC
ACAGCGTGGACAATAGGTAGTGCAATTTCATTTATCCCAAAGTTAGCCGA
CAGCCCTATAAGTTGAAAATTCGGGTTTTCCCTCCGACCGGAGTAGCTTG
TTTTAACCATGGACTCATGCATCCCAACTAGGCCGGGACGGAGCATGTTT
GCACTGGCCAGGCCGCGCACTGGCCAAGCCTGGATTGCCGTGATGCCTTG
GCGTCGGCAAGCCGGATGAGGGGCCGCTCGCTAGACAAAGCGTAATAGCC
TTCGGCAAGTACTGTGAGTCTCTTTGCAAGTTGCTCTTGGGCGCACCCTA
ACGGCCACGGGAGGAACAAGCGGTAATTATGATTGATTCAGACCTCTAGG
TCGCCAGACGTTGCCCCTGCCAGCATATATTCAACTGTACAGTAAATACT
ACTGTATGTAGTCTGCTTGAGTACTGTACTCACGGTGTGCTTGCCGTAGT
CCCGAGACCATTCACCAATGCAGTACTCGCTGAACTGCCAAAAATCCATA
CACGCGGTCCGGGGTGTGGGCAGAAACGAACCACACAGCCTCTTGATCCC
GCGGTTTCCCTCCCTCCCCCTCTCCGCCCCCCTCCCTCGCCGCACGGCAC
CTGCCCGTCAGTGATGGAATATCTAAGCAAATCAACTAATTTATCGACGG
CACTGATCTATATATCTATCGATAGATGATATTAGATAGTTTGACCCACA
CTAAATCCAAGTACAAGTAGCTAGTAGCGCCACCCACAAATTCAGTCGAA
CCCGATAACTATCTGCTGATCGATATTCCATCACTGCTGCCCGCCACCAC
CGCCGCAGCTGCGCCCCCACGACACCATCGGAGGCGGGGTGCTCCGCAAA
CTCGGGTAGCGGCGCGTACGAACCGCCCCAACACCATCACCACCACGCGC
ACAGCTCTGCCGCCGCCTCTGTGGCTGCTGCTGCTGCTGCTGCT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig86:110675..112968-

>mRNA_S-ischiensis_contig86.20186.1 ID=mRNA_S-ischiensis_contig86.20186.1|Name=mRNA_S-ischiensis_contig86.20186.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig86:110675..112968- (Schizocladia ischiensis KU_0333)
ATGGCGTCGTCTGCGGGAAAGAAATCCCTCGAGGCGGGGGTTGGTGGCAC
CCTATCGGTCTCCAGATGGCGTCGTCTGCGGGAAAGAAATCCCTCGAGGC
GGGGGTTGGTGGCACCCTATCGGTCTCCAGCTGCGCCCCCACGACACCAT
CGGAGGCGGGGTGCTCCGCAAACTCGGGTAGCGGCGCGTACGAACCGCCC
CAACACCATCACCACCACGCGCACAGCTCTGCCGCCGCCTCTGTGGCTGC
TGCTGCTGCTGCTGCTCTGCGCCCCCACGACACCATCGGAGGCGGGGTGC
TCCGCAAACTCGGGTAGCGGCGCGTACGAACCGCCCCAACACCATCACCA
CCACGCGCACAGCTCTGCCGCCGCCTCTGTGGCTGCTGCTGCTGCTGCTG
CT
back to top