prot_S-ischiensis_contig85.20121.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig85.20121.1
Unique Nameprot_S-ischiensis_contig85.20121.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length197
Homology
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BLAST of mRNA_S-ischiensis_contig85.20121.1 vs. uniprot
Match: A0A836C7R2_9STRA (RPAP3_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.390e-8
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0 
Query:    8 PKKLPATQTEFERDWLRRCRSDKDQQSYLALVEPKRLAKLFAADMPPNLLGGVLGVLAR 66
            P + P TQ+EFERDW RRC++  D  + L LV    + KLF  ++ P LLG +LGVL+R
Sbjct:   41 PLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSR 99
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20121.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7R2_9STRA3.390e-849.15RPAP3_C domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025986RNA-polymerase II-associated protein 3-like, C-terminal domainPFAMPF13877RPAP3_Ccoord: 12..70
e-value: 1.5E-8
score: 35.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:167720..168310 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20121.1mRNA_S-ischiensis_contig85.20121.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig85 167720..168311 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig85.20121.1 ID=prot_S-ischiensis_contig85.20121.1|Name=mRNA_S-ischiensis_contig85.20121.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp
RGPAQGPPKKLPATQTEFERDWLRRCRSDKDQQSYLALVEPKRLAKLFAA
DMPPNLLGGVLGVLARGFEGTSKCPPPPSDGGAAEPGVGGGAPNTGGAAP
AQEDEALGKDGSGGGLLTSGGGGGVGAAAPASEPPAAAATAADTGGSSRQ
AQAEGEDMGESNSRPRAKPADTFPHAKPVKAGSGGVGAAEECVAWLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025986RPAP3-like_C