mRNA_S-ischiensis_contig85.20128.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20128.1
Unique NamemRNA_S-ischiensis_contig85.20128.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:240135..242070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size597
Cds size597
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20128.1prot_S-ischiensis_contig85.20128.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 240135..242070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.4730873-CDS-S-ischiensis_contig85:240134..2403691622817339.4730873-CDS-S-ischiensis_contig85:240134..240369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 240135..240369 -
1695741039.6562037-CDS-S-ischiensis_contig85:240134..2403691695741039.6562037-CDS-S-ischiensis_contig85:240134..240369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 240135..240369 -
1622817339.4851458-CDS-S-ischiensis_contig85:241557..2416371622817339.4851458-CDS-S-ischiensis_contig85:241557..241637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 241558..241637 -
1695741039.6682224-CDS-S-ischiensis_contig85:241557..2416371695741039.6682224-CDS-S-ischiensis_contig85:241557..241637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 241558..241637 -
1622817339.498657-CDS-S-ischiensis_contig85:241788..2420701622817339.498657-CDS-S-ischiensis_contig85:241788..242070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 241789..242070 -
1695741039.684508-CDS-S-ischiensis_contig85:241788..2420701695741039.684508-CDS-S-ischiensis_contig85:241788..242070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 241789..242070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20128.1

>prot_S-ischiensis_contig85.20128.1 ID=prot_S-ischiensis_contig85.20128.1|Name=mRNA_S-ischiensis_contig85.20128.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=199bp
MFPFEEGDVTVGNISIAGLGLAVSASAAAGGQGQAQRRAGYGCTRPYVVV
NVAGREARSGVQPVGGGGRRDRLSDPTAYACGAACPGDEWKSGQGTVFPE
VFVFDGVAVLGELVLVTLMDWQGMGRADCVVGQVAIAMETARRVPPPPDT
RSSSSSSNNSSPVRDGGRSSPMSQSELVYRLTGTWLLTQPGPGSPRPIP
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mRNA from alignment at S-ischiensis_contig85:240135..242070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20128.1 ID=mRNA_S-ischiensis_contig85.20128.1|Name=mRNA_S-ischiensis_contig85.20128.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1936bp|location=Sequence derived from alignment at S-ischiensis_contig85:240135..242070- (Schizocladia ischiensis KU_0333)
ATGTTCCCGTTTGAGGAAGGGGACGTCACTGTGGGAAACATATCCATCGC
GGGCCTGGGCCTGGCGGTCTCTGCCAGTGCCGCCGCCGGGGGGCAGGGAC
AGGCGCAGCGCAGGGCGGGCTACGGCTGCACGCGTCCGTACGTCGTGGTG
AATGTGGCGGGACGGGAAGCCCGCTCTGGAGTTCAGCCGGTGGGAGGCGG
TGGCCGTCGTGACCGCCTCAGCGACCCTACTGCGTATGCATGTGGCGCCG
CCTGCCCCGGTGACGAGTGGAAGAGTGGGCAGGTAACTTAACCATGGTAC
AAAAGTGCGATTTTCGTCGCCCCAAAAATTGCCCAAATATCGATACTTTC
CCGAAAAGACAGATTTGCTCGACTTGTGGCCCCAAATTGCTATTGTTTCA
CGTCGCACTTTTGCACCATGGTTTTACTGGCAGGGCACGGTGTTCCCCGA
GGTGTTTGTCTTTGACGGGGTGGCGGTGCTTGGGGAGCTGGTGTTGGTGA
CTCTCATGGACTGGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAG
TGTGTGAGTGAGTGGGTGAGTGCGTGAGTGAGTGGGTGAGTGAGTGATTG
AGTGAGTGAGTGAGTGAGTGAGTGCGTGAGTGTGTGAGTGAGTGATTGAG
TGAGTATTGAGTGAGTCTTGGGTACTTGCGTGATACTACTGAAGTACTTG
CAATACTAGCACATTCCATACTTGCGCAATATATCGAACTACTGAAGTGC
GAGTACTTGTAGTGCTTGCACGTTCCGTACTTGGGCAATACTGCTGAAGT
ACATGTAATGCTTCTACTTGCACATTCTGTCGCTACTTCGAGGTACGCAG
TACTACTGAAGTACTTCGACGTGCCATACTTGTAATACTTGTACATGCCG
TGCTCACATAGCACTACTAAAGTGCTTGTACAAATAATTATACACTACTA
CTTGTACATTCCATACTTGCGTATTACTTGTAATGCTTGTGCAGTCCGTG
CGTACGTGCCGGGATACCTTGCCCACACCCATCCAGGGTTGGCACGTAGC
CCCAAAGTGGCGGCCTTTCAGGCCCTTAATTAGAGGTTAATTAGGGGCAA
TTGGATCTAAAATGGAAGCTAATTAGGCCCTAGCTACCCTCTAAGTGCGA
ACCCTGCATCCATCTACAGGCAGGGGATGGGCCGTGCATACCGTGTGGTG
GGGCAGGTGGCTTGCGTAGTACGAGTACTTGTATATTCCATGCTTACGTA
ATGCTACTGAAGTACTTGTTTGTAGTCCTTGCGCATTCCGTGTGTAACTT
CCGTGCTGATGTACCCTGTCCACATCCCATCTACTCTATAGGCGGGGGAT
GGGCCCGGCGGACCGTGTGGTGGGACAGGTGGCCGTGGCCATGGATACGT
ACTTAAGTATTCTTTGTAATGCTTGCACATCCGTGCATACGTGCCGGCAT
ACCCTGTCCACATCCATCTACAGGCAGGGGATGCATACTTACGTATTGCT
TGTAATGCTTGCACATTCTGTGCGTACGTGCCGTCTACTATACAGGCAGG
GGATGGGCCGGGCGGACCGTGTGGTGGGGCAGGTGGCTTGCGTAGTACTG
CTACATCCCATACTTACGTATTACTTCGAAGTACTTGTAACGCTTGTACA
TCCCGTGTATACGTGCTGACGTACCCTGTCCACATCCCATCTACTGTACA
GGCAGGGGATGGGCCGGGCAGACTGCGTGGTGGGGCAGGTAGCCATCGCC
ATGGAGACCGCCAGAAGAGTCCCCCCTCCGCCGGACACACGCAGCAGCAG
CAGCAGCAGCAACAACAGCAGCCCCGTCAGGGATGGAGGGCGTTCGTCCC
CCATGTCTCAATCCGAACTAGTCTACCGCCTGACCGGGACCTGGCTGCTC
ACTCAACCGGGGCCGGGCAGCCCCCGGCCCATTCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:240135..242070-

>mRNA_S-ischiensis_contig85.20128.1 ID=mRNA_S-ischiensis_contig85.20128.1|Name=mRNA_S-ischiensis_contig85.20128.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1194bp|location=Sequence derived from alignment at S-ischiensis_contig85:240135..242070- (Schizocladia ischiensis KU_0333)
ATGTTCCCGTTTGAGGAAGGGGACGTCACTGTGGGAAACATATCCATCGC
GGGCCTGGGCCTGGCGGTCTCTGCCAGTGCCGCCGCCGGGGGGCAGGGAC
AGGCGCAGCGCAGGGCGGGCTACGGCTGCACGCGTCCGTACGTCGTGGTG
AATGTGGCGGGACGGGAAGCCCGCTCTGGAGTTCAGCCGGTGGGAGGCGG
TGGCCGTCGTGACCGCCTCAGCGACCCTACTGCGTATGCATGTGGCGCCG
CCTGCCCCGGTGACGAGTGGAAGAGTGGGCAGATGTTCCCGTTTGAGGAA
GGGGACGTCACTGTGGGAAACATATCCATCGCGGGCCTGGGCCTGGCGGT
CTCTGCCAGTGCCGCCGCCGGGGGGCAGGGACAGGCGCAGCGCAGGGCGG
GCTACGGCTGCACGCGTCCGTACGTCGTGGTGAATGTGGCGGGACGGGAA
GCCCGCTCTGGAGTTCAGCCGGTGGGAGGCGGTGGCCGTCGTGACCGCCT
CAGCGACCCTACTGCGTATGCATGTGGCGCCGCCTGCCCCGGTGACGAGT
GGAAGAGTGGGCAGGGCACGGTGTTCCCCGAGGTGTTTGTCTTTGACGGG
GTGGCGGTGCTTGGGGAGCTGGTGTTGGTGACTCTCATGGACTGGGCACG
GTGTTCCCCGAGGTGTTTGTCTTTGACGGGGTGGCGGTGCTTGGGGAGCT
GGTGTTGGTGACTCTCATGGACTGGCAGGGGATGGGCCGGGCAGACTGCG
TGGTGGGGCAGGTAGCCATCGCCATGGAGACCGCCAGAAGAGTCCCCCCT
CCGCCGGACACACGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCCCCGT
CAGGGATGGAGGGCGTTCGTCCCCCATGTCTCAATCCGAACTAGTCTACC
GCCTGACCGGGACCTGGCTGCTCACTCAACCGGGGCCGGGCAGCCCCCGG
CCCATTCCCGCAGGGGATGGGCCGGGCAGACTGCGTGGTGGGGCAGGTAG
CCATCGCCATGGAGACCGCCAGAAGAGTCCCCCCTCCGCCGGACACACGC
AGCAGCAGCAGCAGCAGCAACAACAGCAGCCCCGTCAGGGATGGAGGGCG
TTCGTCCCCCATGTCTCAATCCGAACTAGTCTACCGCCTGACCGGGACCT
GGCTGCTCACTCAACCGGGGCCGGGCAGCCCCCGGCCCATTCCC
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