mRNA_S-ischiensis_contig84.20074.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20074.1
Unique NamemRNA_S-ischiensis_contig84.20074.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:446496..447736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_002570.1
Exons2
Model size294
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.3440082-CDS-S-ischiensis_contig84:446496..4466491622817337.3440082-CDS-S-ischiensis_contig84:446496..446649Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 446497..446649 -
1695741038.00145-CDS-S-ischiensis_contig84:446496..4466491695741038.00145-CDS-S-ischiensis_contig84:446496..446649Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 446497..446649 -
1622817337.3553684-CDS-S-ischiensis_contig84:447598..4477361622817337.3553684-CDS-S-ischiensis_contig84:447598..447736Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 447599..447736 -
1695741038.011919-CDS-S-ischiensis_contig84:447598..4477361695741038.011919-CDS-S-ischiensis_contig84:447598..447736Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 447599..447736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20074.1prot_S-ischiensis_contig84.20074.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 446497..447736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20074.1

>prot_S-ischiensis_contig84.20074.1 ID=prot_S-ischiensis_contig84.20074.1|Name=mRNA_S-ischiensis_contig84.20074.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=97bp
ALEAVYLEAEARGVHTQLKGTRHFDHMVAFLVRAGRAQGLVRLCLQAGHL
KDAQKLCALHYRHHLHSEAESHGAAAAAGATGRENDSDSEPEEGEDA
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mRNA from alignment at S-ischiensis_contig84:446496..447736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20074.1 ID=mRNA_S-ischiensis_contig84.20074.1|Name=mRNA_S-ischiensis_contig84.20074.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1241bp|location=Sequence derived from alignment at S-ischiensis_contig84:446496..447736- (Schizocladia ischiensis KU_0333)
GCCCTGGAGGCAGTATACCTGGAGGCCGAGGCCAGGGGGGTCCACACCCA
GCTAAAGGGCACCCGGCACTTTGACCACATGGTGGCGTTCCTTGTCCGCG
CTGGGCGTGCCCAAGGCCTGGTGCGCCTCTGCCTGCAGGTGATTTCGTGG
GACTTCAAGTGCACTTGTATAGCACTCGTAGTCTAGCATGGAACTCACCG
CTTATCTACCACTCAAATATGCAGCATGTCTTGCTAAGTGCATGTACTTG
TAGAAGTATGTATGTCCGCGGCCTGGTGCGCCTCTGCCTGCAGGTGATTT
CACGGACTTGAGATAAGGTACTGCCACGAGTACGTAGTATATATGCTCGT
GTATATATATCGACGCACACTCATATAGCTGGTCTTGCGACCTGTTTTGT
TGAAGTATGTATGCCCGCGGCCTGGTGCGCCTCTGCCTGCAGCTGATTTC
GCTCGCGCGACTTCGAGTGCACTTGTAAAAGTAAGTTAGCATGGAACTTA
CCGCTTATCTACCACTCAAATAGGTTGTCTTGCTAAGTGCATGTACTTGT
ATTGTAGAAATATGTATGCCCAAGGCCTGGTGCGCCTCTGGCTGCAGGTG
ATTTCGCGGGACTTCGGCGTACACTCGTATAGCATGTCTTGCTCTTGTCA
GGCAGGTACTTGTACCCAGACTGTACTCGAGTACCGTCATCGTCCGAGAG
ATGTTGCCCCCACGGGACAATTTTCGGGGGCATATTTCTAGCTGGGAAGG
TCATCAATTGTCCCAAAACTCTTAGAACAGTTCCCCCAGGTCCTGAGGGA
GATTTTCGGAGTTTTCCTGCGCGAATCCAGCCAGTAATCGGCAAGACCAG
TTCTCCCGAAAATTGGCCTGGGGGGGCAAGATCTCTCTGACGATTACGGT
AGTACTACTGTACTGCACATGCTCCATCGCTGGCACAAGAAGCTTTGCAG
TGCGCGGCCCGCAAGTCCCATACTACTGCACATGCATGCGTCGTGCTCAC
AAGTACTGTACAATGTACACACAAGGCCTGCAGTAAATTGAGTACCGGTA
CGGCCGCCGCCACCACCGCCCCCCGGTCCACCTGTAGGCGGGCCATCTCA
AGGACGCTCAGAAGCTGTGCGCCCTGCACTACCGCCACCATCTCCACTCG
GAGGCAGAGTCACACGGGGCGGCGGCGGCGGCGGGGGCCACTGGCAGGGA
GAACGACTCAGACTCAGAGCCTGAGGAGGGAGAAGACGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:446496..447736-

>mRNA_S-ischiensis_contig84.20074.1 ID=mRNA_S-ischiensis_contig84.20074.1|Name=mRNA_S-ischiensis_contig84.20074.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=582bp|location=Sequence derived from alignment at S-ischiensis_contig84:446496..447736- (Schizocladia ischiensis KU_0333)
GCCCTGGAGGCAGTATACCTGGAGGCCGAGGCCAGGGGGGTCCACACCCA
GCTAAAGGGCACCCGGCACTTTGACCACATGGTGGCGTTCCTTGTCCGCG
CTGGGCGTGCCCAAGGCCTGGTGCGCCTCTGCCTGCAGGCCCTGGAGGCA
GTATACCTGGAGGCCGAGGCCAGGGGGGTCCACACCCAGCTAAAGGGCAC
CCGGCACTTTGACCACATGGTGGCGTTCCTTGTCCGCGCTGGGCGTGCCC
AAGGCCTGGTGCGCCTCTGCCTGCAGGCGGGCCATCTCAAGGACGCTCAG
AAGCTGTGCGCCCTGCACTACCGCCACCATCTCCACTCGGAGGCAGAGTC
ACACGGGGCGGCGGCGGCGGCGGGGGCCACTGGCAGGGAGAACGACTCAG
ACTCAGAGCCTGAGGAGGGAGAAGACGCCGCGGGCCATCTCAAGGACGCT
CAGAAGCTGTGCGCCCTGCACTACCGCCACCATCTCCACTCGGAGGCAGA
GTCACACGGGGCGGCGGCGGCGGCGGGGGCCACTGGCAGGGAGAACGACT
CAGACTCAGAGCCTGAGGAGGGAGAAGACGCC
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