prot_S-ischiensis_contig84.20054.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig84.20054.1
Unique Nameprot_S-ischiensis_contig84.20054.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length231
Homology
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BLAST of mRNA_S-ischiensis_contig84.20054.1 vs. uniprot
Match: D8LEC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC3_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 4.100e-52
Identity = 90/223 (40.36%), Postives = 137/223 (61.43%), Query Frame = 0 
Query:    7 LLFFAGGSWLGSRRSSVVRADPLGLLTQIKGTYTHPVDDTMSVSVSYDLENESNLPTSVIRRVSLTKTQEISLEGDKINPGARVSVTGAYLPAERAPAGSLIVETEDRLAGVDVNGASQQAHFHFGRGFLDDRLRFVLSPVATYSRLRHRRINFAHWVPRHRPLGAGGGLPSMYLDQADLRCDWTQSFPPNSRMEGVGVSLSLRTGAGGGLTCRVLDGRPTRR 229
            LL     S   + RS+    DP+ LL+ + GTYTH VDD +SV+VSYDL+++S++P S +  VS+TK Q++  +     P AR+++TG+ L  +R P+G  +++T ++  G+++N A+++A F F R F+D R +  L+PV TY  LR RR+NF+  VP +RP  +  GLPSM L Q  +  DW Q  P  S + G+GV+L L TG    L+  + DG    R
Sbjct:   11 LLALLSCSTTNAGRSTGGSGDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTLTGSALIKQRLPSGGAMIDTGNKTVGININHAARRAQFRFTRAFMDGRFKVGLNPVVTYGALRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSR 233
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BLAST of mRNA_S-ischiensis_contig84.20054.1 vs. uniprot
Match: A0A6H5JDN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.980e-7
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:    7 LLFFAGGSWLGSRRSSVVRADPLGLLTQIKGTYTHPVDDTMSVSVSYDLENESNLPTSVI 66
            LL     S   + RS+    DP+ LL+ + GTYTH VDD +SV+VSYDL+++S++P S +
Sbjct:   11 LLALLSCSTTNAGRSTAGSNDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYL 70
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEC3_ECTSI4.100e-5240.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDN2_9PHAE8.980e-745.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..231
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:227043..231671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20054.1mRNA_S-ischiensis_contig84.20054.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig84 226838..231671 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig84.20054.1 ID=prot_S-ischiensis_contig84.20054.1|Name=mRNA_S-ischiensis_contig84.20054.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=231bp
MARHVALLFFAGGSWLGSRRSSVVRADPLGLLTQIKGTYTHPVDDTMSVS
VSYDLENESNLPTSVIRRVSLTKTQEISLEGDKINPGARVSVTGAYLPAE
RAPAGSLIVETEDRLAGVDVNGASQQAHFHFGRGFLDDRLRFVLSPVATY
SRLRHRRINFAHWVPRHRPLGAGGGLPSMYLDQADLRCDWTQSFPPNSRM
EGVGVSLSLRTGAGGGLTCRVLDGRPTRRGS
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