mRNA_S-ischiensis_contig84.20054.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20054.1
Unique NamemRNA_S-ischiensis_contig84.20054.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20054.1 vs. uniprot
Match: D8LEC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC3_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 5.310e-51
Identity = 90/223 (40.36%), Postives = 137/223 (61.43%), Query Frame = 2 
Query:  224 LLFFAGGSWLGSRRSSVVRADPLGLLTQIKGTYTHPVDDTMSVSVSYDLENESNLPTSVIRRVSLTKTQEISLEGDKINPGARVSVTGAYLPAERAPAGSLIVETEDRLAGVDVNGASQQAHFHFGRGFLDDRLRFVLSPVATYSRLRHRRINFAHWVPRHRPLGAGGGLPSMYLDQADLRCDWTQSFPPNSRMEGVGVSLSLRTGAGGGLTCRVLDGRPTRR 892
            LL     S   + RS+    DP+ LL+ + GTYTH VDD +SV+VSYDL+++S++P S +  VS+TK Q++  +     P AR+++TG+ L  +R P+G  +++T ++  G+++N A+++A F F R F+D R +  L+PV TY  LR RR+NF+  VP +RP  +  GLPSM L Q  +  DW Q  P  S + G+GV+L L TG    L+  + DG    R
Sbjct:   11 LLALLSCSTTNAGRSTGGSGDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYLTGVSVTKAQDLYRKTAPTEPLARLTLTGSALIKQRLPSGGAMIDTGNKTVGININHAARRAQFRFTRAFMDGRFKVGLNPVVTYGALRRRRVNFSTLVPPYRPFLSESGLPSMSLQQRSVVWDWAQGMPSISPLHGLGVALRLHTGRRALLSATLFDGTDRSR 233
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BLAST of mRNA_S-ischiensis_contig84.20054.1 vs. uniprot
Match: A0A6H5JDN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.220e-6
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:  224 LLFFAGGSWLGSRRSSVVRADPLGLLTQIKGTYTHPVDDTMSVSVSYDLENESNLPTSVI 403
            LL     S   + RS+    DP+ LL+ + GTYTH VDD +SV+VSYDL+++S++P S +
Sbjct:   11 LLALLSCSTTNAGRSTAGSNDPMDLLSSVSGTYTHFVDDDLSVTVSYDLQDDSSIPFSYL 70
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEC3_ECTSI5.310e-5140.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDN2_9PHAE2.220e-645.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:226838..231671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001710.1
Exons5
Model size898
Cds size693
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20054.1prot_S-ischiensis_contig84.20054.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 227043..231671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.3028984-UTR-S-ischiensis_contig84:226837..2270421622817335.3028984-UTR-S-ischiensis_contig84:226837..227042Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 226838..227042 +
1695741036.1965177-UTR-S-ischiensis_contig84:226837..2270421695741036.1965177-UTR-S-ischiensis_contig84:226837..227042Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 226838..227042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.3155024-CDS-S-ischiensis_contig84:227042..2272451622817335.3155024-CDS-S-ischiensis_contig84:227042..227245Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 227043..227245 +
1695741036.2065306-CDS-S-ischiensis_contig84:227042..2272451695741036.2065306-CDS-S-ischiensis_contig84:227042..227245Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 227043..227245 +
1622817335.3257792-CDS-S-ischiensis_contig84:228639..2287491622817335.3257792-CDS-S-ischiensis_contig84:228639..228749Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 228640..228749 +
1695741036.2255173-CDS-S-ischiensis_contig84:228639..2287491695741036.2255173-CDS-S-ischiensis_contig84:228639..228749Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 228640..228749 +
1622817335.3362198-CDS-S-ischiensis_contig84:229379..2294881622817335.3362198-CDS-S-ischiensis_contig84:229379..229488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 229380..229488 +
1695741036.241039-CDS-S-ischiensis_contig84:229379..2294881695741036.241039-CDS-S-ischiensis_contig84:229379..229488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 229380..229488 +
1622817335.350008-CDS-S-ischiensis_contig84:230968..2310791622817335.350008-CDS-S-ischiensis_contig84:230968..231079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 230969..231079 +
1695741036.2523723-CDS-S-ischiensis_contig84:230968..2310791695741036.2523723-CDS-S-ischiensis_contig84:230968..231079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 230969..231079 +
1622817335.3619263-CDS-S-ischiensis_contig84:231511..2316711622817335.3619263-CDS-S-ischiensis_contig84:231511..231671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 231512..231671 +
1695741036.2676759-CDS-S-ischiensis_contig84:231511..2316711695741036.2676759-CDS-S-ischiensis_contig84:231511..231671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 231512..231671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20054.1

>prot_S-ischiensis_contig84.20054.1 ID=prot_S-ischiensis_contig84.20054.1|Name=mRNA_S-ischiensis_contig84.20054.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=231bp
MARHVALLFFAGGSWLGSRRSSVVRADPLGLLTQIKGTYTHPVDDTMSVS
VSYDLENESNLPTSVIRRVSLTKTQEISLEGDKINPGARVSVTGAYLPAE
RAPAGSLIVETEDRLAGVDVNGASQQAHFHFGRGFLDDRLRFVLSPVATY
SRLRHRRINFAHWVPRHRPLGAGGGLPSMYLDQADLRCDWTQSFPPNSRM
EGVGVSLSLRTGAGGGLTCRVLDGRPTRRGS
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mRNA from alignment at S-ischiensis_contig84:226838..231671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20054.1 ID=mRNA_S-ischiensis_contig84.20054.1|Name=mRNA_S-ischiensis_contig84.20054.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4834bp|location=Sequence derived from alignment at S-ischiensis_contig84:226838..231671+ (Schizocladia ischiensis KU_0333)
TGCAGATCCCAGCTGCCGCGCCCGCCATAGTCGGCGGTGCGCCATTCCGA
CGAGTTTCTCGCCCATCCTAGAGCTTTGGGGTCGGTTGACGTCCGCTGAT
TTCGGCCCTTCTGCCGCCCTTTGGGTCTGTCCAGCTCACGGGGTCGGAAG
TGCGCCTTTCGCCAAGGGGTCGCGGGAACCTGCAGCTGCGAGCCTTGCTT
GAGGCATGGCGCGGCACGTGGCCCTGCTGTTCTTTGCTGGGGGCTCTTGG
CTTGGCAGCCGACGGTCGAGCGTGGTCAGGGCTGATCCGCTGGGGCTCCT
TACGCAGATCAAGGGCACGTACACGCACCCGGTGGACGACACAATGTCCG
TGAGCGTGAGCTATGACCTGGAAAACGAGTCCAACCTGCCCACGAGCGTC
ATCAGAAGGTGTGTGACCCGGGCGCGATTCCTGCCACCTTGTCAGTCCGA
GGCTCTTTAGTCTCTGGGGGATCAAGAGGCCCCTGTCGCAGTTGTCCCTG
GGTCACCCCTCTGTGGTTGATGTGACGGGGTGTTATGTACGGGAGTACTG
TGCAGTAGATGCAGTAAATGGAAGATGCAACAACCATGGCAGGGAGGCGT
TGGTGCCAATGAGCACTGCCGCTTCTCTTCTGACGGGCAGCGTGTAGCAG
GGACCCCGGTGCATCTCTGCGAGCGCCTGCATGACAACGTGCGGGTCTGT
GAGAGGCAATGAGACGAGGTTGAAATAACCGAGCGCAGCCGCGGGGATAT
GGCTAGCGGCAGGGAATGCACAAAACGGAAGACAAAATCCATTCGAACAA
GCTTGCAGGGGGGCGGGCATCAGCGCTCCGGCTACCCTCTTCGGGGGCGG
CGTCGGATTGGACCTCACTGCTTGGAAAACTACTCGAGTACTGTACTTCA
AAGTACCATAGTACAATTGTCCAGTACTAGTGTAATTTTCTACTCGAGTA
CAGTACAGTACAGTTGCACTCAGCACAGTACTACTGTACTTCGAAGTACC
ATGGTACAATTGTACAGTACTACTGTACTCGAAGTAGTAGTAGGACCTCG
CTGCTTGATGAGGCCGGCGAGGTTTCCGAACACAGCAGTACCAGCGGTCC
CTGGGACTTGAGACAAAGAACCCGCTGCACTTGCCTAGAATTGACCTGCC
GCCCCAAGGCGGGGCTGACGGGGTGGCTGCTGACATTGCAAGCCCACGCC
TGTCCATGTACAAGGGTGGTGTTAGTTGGAAGATGTTGCATGCCTCGGTT
TCTCTCACGGGATTTGACCGTTTGGGCCTTGGAAAACCATTGCCCTGCTT
GGTGTGCAGTGGTCTCGGGACTGCGGGTAGGCAAGAGGAACTTGATTACC
CGCAAGTGCAGCCTTCGTAGGGCGATCTCGACTTTTGCTCCTTGCCTGGT
GGTTGTTTTAGTACTTCGCAACAATCTCCGTATGGAGTACTGGATAGAAC
ATTCAAGTATCCATATCTAGCCTGCTCGTAGTGTTGTACTCTACTTCTGA
GTTCTGGTAGGCTCCTCCCGCTGCTGCTGCGGACGCTGCGCCAAGCGATT
CTCGTGGGATGAGCTCGCTGCTTGACCGTGCTCTGCACCGGGACGGCGAT
GACTGGCAGCAGTGATGGAATATCTACTAGTAAGCAAATCAACCTATGTA
TCGACAGCACTGATCTATACATCTATCGATAGTCGATATTCGATAGTTTG
ACCCACACTAAATATATCGAAGTTGTCAGCAGCGCCACCCACCAATGCAG
TAGAGCCTGATAGCTATCTGCTGATTGATATTCTATCACTGATGACTGTC
AGGGTGTCCTTGACCAAGACACAAGAGATCAGCCTGGAGGGTGACAAGAT
CAACCCCGGGGCACGCGTCTCGGTCACGGGCGCCTACTTGCCAGCGGAAC
GAGCGCCGGCAGGCAAGCTGCCGATTGTAGCATTGCCGCATGACTCTTTC
CCGCGCTATTACGTACTCGAGTACAGTACAGTACAGTACAGTACATTGTG
CGTGTGCTTTATTTGTACTTCCGAGTATACGCCTACACTTACCGGCGGAA
CAAGGGCCGGCAGGCAAGTATGCTTGCCTAAGTAGCAATACCACAATGAC
TCTTTCCCACGCTAGTGCTGTACGTACTCGTTCTACTTCGAAGCGTACTT
CGAAGTACATGATTGCAGTGCAGCACATTACCCGTGTGCTACCATGTGCT
TTACGACACTTTTCACGCAAGGTTATGTCGCAAGGCAAGCCAATGAGTAC
ACACACACATATACTCGTACTTCGAAGTACTTGAAGTACTTCGTGTAGTG
CTCGTATGCTTTGAAGTACTTGGAAGTACTTGGCGAGCTCCAGCAAAGCG
GGTGAGCTGCGCGCGACAACTACCGCACTTTACTGTCTGATTTGCCGCAG
TGCGGTGCGGTGACACATCGCTTGCTCTGCGCGCTCCCTGCGCAGGCTCC
TTGATAGTGGAGATGGAGGACCGTTTGTGACTGTTTGTGTGGTGACACAC
CACTTGCTCTGCGCGCTTCTATCCCCTGCGATTGCCGCCCAGGCTCGTTG
ATAGTGGAGACAGAGGACCGGTTGGCCGGCGTGGATGTCAACGGCGCGTC
GCAGCAGGCGCACTTCCACTTTGGGAGGGGCTTCCTTGATGACCGCCTCA
GGTAGGATCCAAGTACTTCCAGGTTTCAATCTGCCCATCAATGCAGTACT
CGTGCAGTGCACTACTTGGCAGCAACCCGGAGGTTGACTTTGGGCGGTCG
ACTAAGCACGCAAGGGCTTCCACTGGGAAGGTAGACCATGGTGCTTGGTG
CTTGCGGCCCAGCCGTAGCCACGCCACTCGTACGTCTTCCCCCCAGCCCT
CCCCCTCCTCCTCCTCCTCCTCCCCCTCTTCCTGCCCGTCCACCTTCCCT
TCCCCACACAACTTTCCCTGGCGAGCTAGGGAAGGGCCATTGTTGAGGTC
TCGAGTGACGTGGCCCGCACCTCGCCCCGTGTTGTTCCTTAAAATACTCG
TACGTGCACTGGGATACGATACGTTGGCAGTGACAACCCTTGCACCGTGT
CAGGCCGCCATTAACCACACGCAGTACGCGTACACCCGACCCTTGCGTGG
CAGTTGTATACTACAGTTACATGCTACAGTTACATCCTACCGTTACATCC
AGCGGTTCACAACCACCCGGAAGAAACTGGGCGGCCCGGGCGCCTGGTCC
GCCTATCGGCATCGCGAAGTTGGGCATCGCCAGACCGATGTCCGAGCCTG
GGCGGTGGATTTACCCCAAATGGCCCCGCAGGGTGAAAATTTTGGCCTCG
TCCGCCCAAATGGGGGCTCCCGGGCACTATTTTGTGGGCGGAGGAGCCAC
AAAATTAGGCGGCGGTGCCGCCTACGGCGCCGCAAAAGTTAGGCGGCTTT
GGGCCCATAACCGATTCTTTAGGCGGGCCGCCTAAATCGTACCTTGTTTG
TGAAGCACTGGTTACATCCCCTCCACGAACCCCGCTCTTCCACGTGATGG
CGGGCTGCTGCGAGCTGCGATGGTTGCCGCGCCGACGGGCTTGTCCTGAG
GTAGTATCATGCTACAGTTGCATCCTACAGCTACGGTACCCTCCACTAAC
CTGTTTAGTGCCTCCATTCCCGTGATAGCGGGCTTCTGCAATGGTTGCCG
TGCCGACAGGCTTGTCCTGAGTGGCAGTTACATGCTACAGTTACATCTTA
CAGTTCCCCTCCACTATTCTAGCGCTTCCCTTCCCGTGATGGGCTGCTGC
GATGGTTGCCGTGGCGACCGACAGGCTTGTCCTGAGCCCCGTGGCCACGT
ACGGTGTGGCAGTTACATGCTACAGTTACACCCTACAGTTGCCCTCCACT
AACCTACTTGGCTCTTCCGTTCCCGTGATGGCGGGCTGTGATGGTTGCCG
TGCTCACAGGCTTGATACATCATGCTACAGATACACCCTGCAGTTTCCCT
CCACTAGCCTACGTAGCGCTTCCATTCCCGTGATGGCGGGCTGCGATGGT
TGCCGTGCCGACCGACAGGGTTGTCCTGAGTGGCATTTACATGCTACAGT
TACACCCTACAGATACCCTCCACTAACCAGCGCTTACCTTCCCGGGATGG
CGGGCTGCTGCGATTGTTGCCGTGGTGACAGGTTTGTCCTGAGCCCCGTG
GCCACGTACAGCCGTCTACGCCACCGCCGCATCAACTTTGCCCACTGGGT
GCCTCGCCACAGGCCGCTGGGCGCCGGGGGAGGCCTTCCAAGGTGAGCGT
GTGCATTCACTACCAGGCCAGCAAGATTTGGTGCGCCGTTCCAAGTAGTA
TACATGCACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATGGACCATGC
GCCTCGGGCGAGACGGAGCAGTAGTAGTAGCAGGGCAAAACACAGTGCGA
GGTGCAGGCCACGTGGCCGCCAAAGATCTCCACGGTGGATCCTTCCTTAG
CTCGCCAGGGAAGGATTGTGTGGGGAAGGGGAGGGGGGGGAGGACGAGGA
GGTGGCGGAGGAGGAGGAGGAGGACCCCCCCAGTACCCTGAAGCAACCAT
CTCTACCGAGTCATGCCACAGATGCAAAGCGCATGTCTCTGCGACCCGAC
CGAGCTTCAGCAGTGGCACTTGCCCCAAAGGCCCCTAAAGCGCATACCCC
CCCCCCCCCACCCCCTGCCCGCAGCATGTACCTCGACCAGGCCGACCTCC
GCTGCGACTGGACCCAGTCCTTCCCGCCCAACTCCCGCATGGAAGGTGTG
GGCGTCTCCCTCTCCCTCCGCACCGGGGCGGGCGGCGGGCTCACCTGCCG
GGTCCTCGACGGCCGCCCGACCCGCCGGGGCAGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:226838..231671+

>mRNA_S-ischiensis_contig84.20054.1 ID=mRNA_S-ischiensis_contig84.20054.1|Name=mRNA_S-ischiensis_contig84.20054.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1386bp|location=Sequence derived from alignment at S-ischiensis_contig84:226838..231671+ (Schizocladia ischiensis KU_0333)
ATGGCGCGGCACGTGGCCCTGCTGTTCTTTGCTGGGGGCTCTTGGCTTGG
CAGCCGACGGTCGAGCGTGGTCAGGGCTGATCCGCTGGGGCTCCTTACGC
AGATCAAGGGCACGTACACGCACCCGGTGGACGACACAATGTCCGTGAGC
GTGAGCTATGACCTGGAAAACGAGTCCAACCTGCCCACGAGCGTCATCAG
AAGATGGCGCGGCACGTGGCCCTGCTGTTCTTTGCTGGGGGCTCTTGGCT
TGGCAGCCGACGGTCGAGCGTGGTCAGGGCTGATCCGCTGGGGCTCCTTA
CGCAGATCAAGGGCACGTACACGCACCCGGTGGACGACACAATGTCCGTG
AGCGTGAGCTATGACCTGGAAAACGAGTCCAACCTGCCCACGAGCGTCAT
CAGAAGGGTGTCCTTGACCAAGACACAAGAGATCAGCCTGGAGGGTGACA
AGATCAACCCCGGGGCACGCGTCTCGGTCACGGGCGCCTACTTGCCAGCG
GAACGAGCGCCGGCAGGGTGTCCTTGACCAAGACACAAGAGATCAGCCTG
GAGGGTGACAAGATCAACCCCGGGGCACGCGTCTCGGTCACGGGCGCCTA
CTTGCCAGCGGAACGAGCGCCGGCAGGCTCGTTGATAGTGGAGACAGAGG
ACCGGTTGGCCGGCGTGGATGTCAACGGCGCGTCGCAGCAGGCGCACTTC
CACTTTGGGAGGGGCTTCCTTGATGACCGCCTCAGGCTCGTTGATAGTGG
AGACAGAGGACCGGTTGGCCGGCGTGGATGTCAACGGCGCGTCGCAGCAG
GCGCACTTCCACTTTGGGAGGGGCTTCCTTGATGACCGCCTCAGGTTTGT
CCTGAGCCCCGTGGCCACGTACAGCCGTCTACGCCACCGCCGCATCAACT
TTGCCCACTGGGTGCCTCGCCACAGGCCGCTGGGCGCCGGGGGAGGCCTT
CCAAGGTTTGTCCTGAGCCCCGTGGCCACGTACAGCCGTCTACGCCACCG
CCGCATCAACTTTGCCCACTGGGTGCCTCGCCACAGGCCGCTGGGCGCCG
GGGGAGGCCTTCCAAGCATGTACCTCGACCAGGCCGACCTCCGCTGCGAC
TGGACCCAGTCCTTCCCGCCCAACTCCCGCATGGAAGGTGTGGGCGTCTC
CCTCTCCCTCCGCACCGGGGCGGGCGGCGGGCTCACCTGCCGGGTCCTCG
ACGGCCGCCCGACCCGCCGGGGCAGTCATGTACCTCGACCAGGCCGACCT
CCGCTGCGACTGGACCCAGTCCTTCCCGCCCAACTCCCGCATGGAAGGTG
TGGGCGTCTCCCTCTCCCTCCGCACCGGGGCGGGCGGCGGGCTCACCTGC
CGGGTCCTCGACGGCCGCCCGACCCGCCGGGGCAGT
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