mRNA_S-ischiensis_contig84.20073.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20073.1
Unique NamemRNA_S-ischiensis_contig84.20073.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:445780..446407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size629
Cds size591
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.8355937-CDS-S-ischiensis_contig84:445779..4463701622817333.8355937-CDS-S-ischiensis_contig84:445779..446370Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 445780..446370 +
1695741035.051796-CDS-S-ischiensis_contig84:445779..4463701695741035.051796-CDS-S-ischiensis_contig84:445779..446370Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 445780..446370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.8490276-UTR-S-ischiensis_contig84:446370..4464071622817333.8490276-UTR-S-ischiensis_contig84:446370..446407Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 446371..446407 +
1695741035.0629117-UTR-S-ischiensis_contig84:446370..4464071695741035.0629117-UTR-S-ischiensis_contig84:446370..446407Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 446371..446407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20073.1prot_S-ischiensis_contig84.20073.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 445780..446370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20073.1

>prot_S-ischiensis_contig84.20073.1 ID=prot_S-ischiensis_contig84.20073.1|Name=mRNA_S-ischiensis_contig84.20073.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp
PLPPTHTIPCKHGHSRVLKVRSRLRSLGSGPQLAQAFISTTSSTSTCSTR
AQVATSTTSPPPPLLPFPTPLSPGELSGRATAEVCSDVARTPPCVVPANP
AAPAKFPLVSYRQGPLLRSLVTWLAPRPVLFLVVLQHLQCLLYAAAASSP
AAVRPNSDKYLSKVAHNSPVCFPTRALQALAAHTSSSHHLQCLLAR*
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mRNA from alignment at S-ischiensis_contig84:445780..446407+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20073.1 ID=mRNA_S-ischiensis_contig84.20073.1|Name=mRNA_S-ischiensis_contig84.20073.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=628bp|location=Sequence derived from alignment at S-ischiensis_contig84:445780..446407+ (Schizocladia ischiensis KU_0333)
CCACTCCCTCCTACTCATACAATACCCTGCAAGCACGGCCACAGTAGAGT
CCTGAAAGTCCGTTCGCGATTGAGGTCCCTCGGGAGTGGCCCGCAACTCG
CCCAGGCTTTTATCTCTACCACGAGCTCTACAAGCACTTGCAGCACACGA
GCTCAAGTCGCCACAAGTACCACATCTCCTCCTCCTCCTCTTCTCCCCTT
CCCCACACCACTTTCCCCTGGCGAGCTATCAGGAAGGGCCACTGCTGAGG
TCTGTAGTGACGTGGCCCGCACGCCGCCCTGTGTTGTTCCTGCTAACCCT
GCAGCACCTGCAAAATTTCCCCTGGTGAGCTATAGGCAAGGGCCACTCCT
GAGGTCTTTAGTGACGTGGCTTGCACCTCGCCCTGTGTTGTTCCTGGTAG
TACTGCAGCACCTGCAGTGCCTACTTTACGCGGCCGCTGCGTCCTCCCCC
GCGGCGGTCAGGCCGAACTCGGACAAATACCTATCGAAAGTGGCCCACAA
CTCGCCTGTGTGTTTCCCTACCAGAGCCCTACAAGCACTTGCAGCTCATA
CGAGCTCAAGTCACCACCTGCAGTGCCTACTTGCGCGGTAATTGCGCGGC
CGCCGCGTCCTCCCCCGTGTTGGTCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:445780..446407+

>mRNA_S-ischiensis_contig84.20073.1 ID=mRNA_S-ischiensis_contig84.20073.1|Name=mRNA_S-ischiensis_contig84.20073.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig84:445780..446407+ (Schizocladia ischiensis KU_0333)
CCACTCCCTCCTACTCATACAATACCCTGCAAGCACGGCCACAGTAGAGT
CCTGAAAGTCCGTTCGCGATTGAGGTCCCTCGGGAGTGGCCCGCAACTCG
CCCAGGCTTTTATCTCTACCACGAGCTCTACAAGCACTTGCAGCACACGA
GCTCAAGTCGCCACAAGTACCACATCTCCTCCTCCTCCTCTTCTCCCCTT
CCCCACACCACTTTCCCCTGGCGAGCTATCAGGAAGGGCCACTGCTGAGG
TCTGTAGTGACGTGGCCCGCACGCCGCCCTGTGTTGTTCCTGCTAACCCT
GCAGCACCTGCAAAATTTCCCCTGGTGAGCTATAGGCAAGGGCCACTCCT
GAGGTCTTTAGTGACGTGGCTTGCACCTCGCCCTGTGTTGTTCCTGGTAG
TACTGCAGCACCTGCAGTGCCTACTTTACGCGGCCGCTGCGTCCTCCCCC
GCGGCGGTCAGGCCGAACTCGGACAAATACCTATCGAAAGTGGCCCACAA
CTCGCCTGTGTGTTTCCCTACCAGAGCCCTACAAGCACTTGCAGCTCATA
CGAGCTCAAGTCACCACCTGCAGTGCCTACTTGCGCGGTAACCACTCCCT
CCTACTCATACAATACCCTGCAAGCACGGCCACAGTAGAGTCCTGAAAGT
CCGTTCGCGATTGAGGTCCCTCGGGAGTGGCCCGCAACTCGCCCAGGCTT
TTATCTCTACCACGAGCTCTACAAGCACTTGCAGCACACGAGCTCAAGTC
GCCACAAGTACCACATCTCCTCCTCCTCCTCTTCTCCCCTTCCCCACACC
ACTTTCCCCTGGCGAGCTATCAGGAAGGGCCACTGCTGAGGTCTGTAGTG
ACGTGGCCCGCACGCCGCCCTGTGTTGTTCCTGCTAACCCTGCAGCACCT
GCAAAATTTCCCCTGGTGAGCTATAGGCAAGGGCCACTCCTGAGGTCTTT
AGTGACGTGGCTTGCACCTCGCCCTGTGTTGTTCCTGGTAGTACTGCAGC
ACCTGCAGTGCCTACTTTACGCGGCCGCTGCGTCCTCCCCCGCGGCGGTC
AGGCCGAACTCGGACAAATACCTATCGAAAGTGGCCCACAACTCGCCTGT
GTGTTTCCCTACCAGAGCCCTACAAGCACTTGCAGCTCATACGAGCTCAA
GTCACCACCTGCAGTGCCTACTTGCGCGGTAA
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