mRNA_S-ischiensis_contig1.1045.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1045.1
Unique NamemRNA_S-ischiensis_contig1.1045.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7226557..7227181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1045.1prot_S-ischiensis_contig1.1045.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7226587..7227181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.1046882-UTR-S-ischiensis_contig1:7226556..72265861622815359.1046882-UTR-S-ischiensis_contig1:7226556..7226586Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7226557..7226586 +
1695739659.0398328-UTR-S-ischiensis_contig1:7226556..72265861695739659.0398328-UTR-S-ischiensis_contig1:7226556..7226586Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7226557..7226586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.115834-CDS-S-ischiensis_contig1:7226586..72266881622815359.115834-CDS-S-ischiensis_contig1:7226586..7226688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7226587..7226688 +
1695739659.056931-CDS-S-ischiensis_contig1:7226586..72266881695739659.056931-CDS-S-ischiensis_contig1:7226586..7226688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7226587..7226688 +
1622815359.1268706-CDS-S-ischiensis_contig1:7227001..72271811622815359.1268706-CDS-S-ischiensis_contig1:7227001..7227181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7227002..7227181 +
1695739659.0653572-CDS-S-ischiensis_contig1:7227001..72271811695739659.0653572-CDS-S-ischiensis_contig1:7227001..7227181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7227002..7227181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1045.1

>prot_S-ischiensis_contig1.1045.1 ID=prot_S-ischiensis_contig1.1045.1|Name=mRNA_S-ischiensis_contig1.1045.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=94bp
MQARVFVQSAKMAKTTSGGRQADDDDGIVVFAKQLTVALDRMSGNMRKNR
HFSAPCRQWGGAGKASSAGGAAALGGSGGGGVKGSGGGGGSGAT
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mRNA from alignment at S-ischiensis_contig1:7226557..7227181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1045.1 ID=mRNA_S-ischiensis_contig1.1045.1|Name=mRNA_S-ischiensis_contig1.1045.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=625bp|location=Sequence derived from alignment at S-ischiensis_contig1:7226557..7227181+ (Schizocladia ischiensis KU_0333)
TCATTGGTGGATCTTCTGGAGAGTATCAACATGCAGGCCAGGGTGTTTGT
GCAGTCGGCCAAGATGGCCAAAACTACGAGCGGCGGGCGCCAGGCGGATG
ACGATGATGGCATCGTGGTCTTTGCCAAGCAGGTACCGCGGTGTGTACAG
AGTGTGTGTGTGTGCATGCACGCGTGCGCGGGCAGGCGTGTGTTTTTGTG
TTTGGGTCTGTGCACCCGAGTGTGTGTGCGCGTGTCTGCATGTGTTTGTG
GGCATGCTTGAAGTACAATGTGCTTACTTCTCAAGCATGCCGTGGCGTGT
GACCATCGACTTGCCAAAGTAGTAGCCATACATCAATGCCCTGCCCCCAG
GGCGGGGGGCACATCTCTCTTTGCGCACTAGCACACAACAACAATAGTAA
ATAGCCCACATCGCCCCCCACCCGCCGGCACATCGCCTGCTATAGCTCAC
CGTGGCGTTGGACCGCATGAGCGGAAACATGCGCAAGAACCGCCATTTCT
CCGCTCCCTGCCGCCAGTGGGGCGGCGCCGGGAAAGCATCGAGCGCGGGG
GGGGCTGCAGCCCTGGGTGGCAGCGGTGGCGGCGGTGTCAAGGGGAGCGG
TGGCGGCGGTGGTAGCGGGGCCACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7226557..7227181+

>mRNA_S-ischiensis_contig1.1045.1 ID=mRNA_S-ischiensis_contig1.1045.1|Name=mRNA_S-ischiensis_contig1.1045.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=564bp|location=Sequence derived from alignment at S-ischiensis_contig1:7226557..7227181+ (Schizocladia ischiensis KU_0333)
ATGCAGGCCAGGGTGTTTGTGCAGTCGGCCAAGATGGCCAAAACTACGAG
CGGCGGGCGCCAGGCGGATGACGATGATGGCATCGTGGTCTTTGCCAAGC
AGATGCAGGCCAGGGTGTTTGTGCAGTCGGCCAAGATGGCCAAAACTACG
AGCGGCGGGCGCCAGGCGGATGACGATGATGGCATCGTGGTCTTTGCCAA
GCAGCTCACCGTGGCGTTGGACCGCATGAGCGGAAACATGCGCAAGAACC
GCCATTTCTCCGCTCCCTGCCGCCAGTGGGGCGGCGCCGGGAAAGCATCG
AGCGCGGGGGGGGCTGCAGCCCTGGGTGGCAGCGGTGGCGGCGGTGTCAA
GGGGAGCGGTGGCGGCGGTGGTAGCGGGGCCACCCTCACCGTGGCGTTGG
ACCGCATGAGCGGAAACATGCGCAAGAACCGCCATTTCTCCGCTCCCTGC
CGCCAGTGGGGCGGCGCCGGGAAAGCATCGAGCGCGGGGGGGGCTGCAGC
CCTGGGTGGCAGCGGTGGCGGCGGTGTCAAGGGGAGCGGTGGCGGCGGTG
GTAGCGGGGCCACC
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