mRNA_S-ischiensis_contig11.2172.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2172.1
Unique NamemRNA_S-ischiensis_contig11.2172.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1769744..1771178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2172.1prot_S-ischiensis_contig11.2172.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1769750..1771178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.2585917-UTR-S-ischiensis_contig11:1769743..17697491622815578.2585917-UTR-S-ischiensis_contig11:1769743..1769749Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1769744..1769749 +
1695739781.931042-UTR-S-ischiensis_contig11:1769743..17697491695739781.931042-UTR-S-ischiensis_contig11:1769743..1769749Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1769744..1769749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.2685144-CDS-S-ischiensis_contig11:1769749..17698771622815578.2685144-CDS-S-ischiensis_contig11:1769749..1769877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1769750..1769877 +
1695739781.9415238-CDS-S-ischiensis_contig11:1769749..17698771695739781.9415238-CDS-S-ischiensis_contig11:1769749..1769877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1769750..1769877 +
1622815578.2781236-CDS-S-ischiensis_contig11:1771117..17711781622815578.2781236-CDS-S-ischiensis_contig11:1771117..1771178Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1771118..1771178 +
1695739781.9504893-CDS-S-ischiensis_contig11:1771117..17711781695739781.9504893-CDS-S-ischiensis_contig11:1771117..1771178Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1771118..1771178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2172.1

>prot_S-ischiensis_contig11.2172.1 ID=prot_S-ischiensis_contig11.2172.1|Name=mRNA_S-ischiensis_contig11.2172.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=63bp
MACQRDGTANQQGRPKLLDGFTYEYGSLSTSDLASLDSHEEQGGPDGGFG
FTGKALLPDGGAA
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mRNA from alignment at S-ischiensis_contig11:1769744..1771178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2172.1 ID=mRNA_S-ischiensis_contig11.2172.1|Name=mRNA_S-ischiensis_contig11.2172.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1435bp|location=Sequence derived from alignment at S-ischiensis_contig11:1769744..1771178+ (Schizocladia ischiensis KU_0333)
GGCTCCATGGCTTGCCAAAGGGATGGGACTGCCAACCAGCAGGGGCGCCC
AAAGCTGCTGGACGGGTTCACCTATGAATATGGCTCTCTGTCGACAAGCG
ACTTGGCGTCACTGGACAGCCACGAGGAGCAAGGGTGCGTATTGTAGTTG
ATGGGCAAACCGAGCTTTGAAACTCCGCCTTTGCAAGATAGTGTAGGCGC
ATGTGCGGTCATCGTGCCGCTCGTACGACAGTCTCTCCCTGGAAAGTGTT
CCAGGTGCCTGGTGGCCGAGGAATTGCCGGCTCATTGAGAGCAAGCCGTG
GGCAACACACACTGGAGGAACACCAACGACGTTTGTGTGCCATGAACTGT
GTTTGAATATACCACATGCAAATAGGTGGCGCTGAGACCGGTTCGATTCT
TGTTTTCATTTCCCCATTTCTCGCAACAGCTGCTTTCCCGTGACAATGTA
TCCAGCAAGATATGGCAAGATAGTGTACGCAATCTTCCAACAAGTGCCCC
ATCCCGCCAGAGTTGCGGCAACATCGAAACACCAACACATTTGTTTCAGT
ATTGCCTCCCGGCTCGCCCTCTGCGGCAGCTTCCCCTCCTGCGGAGAAGG
TTGCATGAAAGCAAACCGGTTCAAACTATAGGGGGAAGCGCCAGCGGAAC
CACCAGCAGCAGCTGGGAGGCATTTGCCAAGCACTTGCTCGTGCTGCTCC
AATTAGCTCGATAGGCACAGTACTTAGTCAGCCCCTGCACAGCGGAAGAG
TTTGCCCCGCTATTGCTGATTTGTCTTCGCGATTTCCGTGCCCGCCTGTG
CAACTCTCGGTGGCTGATCGGGCTCAGAACAGCACGCGCCGGCAGCGGTC
TGATGTTCGTTTCTCGAGTACTCCGAAGTACATATTTTCCCATCCCCCTC
GAGAAGGCGGTGGTTCAGTAAACCACATGAGCGTTTGGCGTCCCGTCGGT
GGGCCGCCATATTTGGGGACACGTCGACAGTAGGTACGCCATTGTACGGG
CGCCTTAAGCTTAGCGCAGGATTGGCATGTGATCGCGTCGCCCGCCCAGG
GTGGAGTATTCTGTGCATGCGTACGCGCTTCCAAGTAGTCGACGTCGGAC
AATCGATTGCCTCTACAATAGATTGGGGGCGGACATGTACTTGGGGAGTT
TACGCTGGCACCGACTGACTACTGGTAGGTTGCACGAGCAGACGGCAACA
ACCCACCCGGAACTGCGGGAGTTCTTAGCGTGGGGTTGCTGTACTCGTAC
TTGGTAGTTTTGCCGCCGACCGTCCACAAAGGGATAAGGCACTGTATGTT
AAATGAGACACTGAGACGCTGGCCTCTGCCCATGCGGCCGCCTGCCCTGC
CCCTTTGCCCCAACCGTGAGCCAGGGGGCCGGACGGGGGGTTTGGTTTCA
CAGGGAAGGCCTTGTTGCCGGACGGAGGAGCAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1769744..1771178+

>mRNA_S-ischiensis_contig11.2172.1 ID=mRNA_S-ischiensis_contig11.2172.1|Name=mRNA_S-ischiensis_contig11.2172.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=378bp|location=Sequence derived from alignment at S-ischiensis_contig11:1769744..1771178+ (Schizocladia ischiensis KU_0333)
ATGGCTTGCCAAAGGGATGGGACTGCCAACCAGCAGGGGCGCCCAAAGCT
GCTGGACGGGTTCACCTATGAATATGGCTCTCTGTCGACAAGCGACTTGG
CGTCACTGGACAGCCACGAGGAGCAAGGATGGCTTGCCAAAGGGATGGGA
CTGCCAACCAGCAGGGGCGCCCAAAGCTGCTGGACGGGTTCACCTATGAA
TATGGCTCTCTGTCGACAAGCGACTTGGCGTCACTGGACAGCCACGAGGA
GCAAGGGGGGCCGGACGGGGGGTTTGGTTTCACAGGGAAGGCCTTGTTGC
CGGACGGAGGAGCAGCCGGGGCCGGACGGGGGGTTTGGTTTCACAGGGAA
GGCCTTGTTGCCGGACGGAGGAGCAGCC
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