mRNA_S-ischiensis_contig81.19856.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig81.19856.1
Unique NamemRNA_S-ischiensis_contig81.19856.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig81contigS-ischiensis_contig81:44590..47125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2177
Cds size2070
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig81.19856.1prot_S-ischiensis_contig81.19856.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig81 45056..47125 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817310.9271624-UTR-S-ischiensis_contig81:44589..446851622817310.9271624-UTR-S-ischiensis_contig81:44589..44685Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 44590..44685 +
1695741016.6317084-UTR-S-ischiensis_contig81:44589..446851695741016.6317084-UTR-S-ischiensis_contig81:44589..44685Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 44590..44685 +
1622817310.9435556-UTR-S-ischiensis_contig81:45045..450551622817310.9435556-UTR-S-ischiensis_contig81:45045..45055Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 45046..45055 +
1695741016.648853-UTR-S-ischiensis_contig81:45045..450551695741016.648853-UTR-S-ischiensis_contig81:45045..45055Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 45046..45055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817310.9585752-CDS-S-ischiensis_contig81:45055..471251622817310.9585752-CDS-S-ischiensis_contig81:45055..47125Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 45056..47125 +
1695741016.6708317-CDS-S-ischiensis_contig81:45055..471251695741016.6708317-CDS-S-ischiensis_contig81:45055..47125Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 45056..47125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig81.19856.1

>prot_S-ischiensis_contig81.19856.1 ID=prot_S-ischiensis_contig81.19856.1|Name=mRNA_S-ischiensis_contig81.19856.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=690bp
MMGKIMQRSGIHYLLGYGGTCPTLGGRPGSGGGGGSGSSSETAAHPAPQG
SGASTPTLMPGIGPSWPAGDNPEEWSDRTASASRQSETGRQEESHTAGAA
AAAAIDLERVNPPAAGATTGTRHAQPRRRSLQALRIRLLGKGKTTAPCSQ
QAVFPAPRPHTCRAGDAAGGGGSWSGGVHSPGRRFHSDAGLQPSPFVQSK
TSGSPAMVAPHAALAAAGSSSSFSSSSAPWSLPPPTRGSGRSVALLSGAS
SAVSLLPSPLGQTAPSLDGEEGDVGEDSEDTDGGADDAAGVVGFSASAAA
AAAGAGELSPSPPASPLPALLLPRPSLPQPPSLLSPPEPQRASGGQLPHP
PPPPSVPPRQFHTSSPHPEDRRHREAADAAPLRLPPAKPWAVRLGGGGTM
VAPAWETGATCTYMSASAVAQEERGEAVSDAAAPGDGLDKARSSSDRELT
NASELSTAAVSISSPAPPSPPTRAHRSATITSANTTAPDLSTAAAFVSCS
APSTPPSRAHRNATASTNAVATATTVSTATSPPPPTQSPPPCPASPPPAT
SDLTTSTAAAAACAGAAAVATAATTISTTTTSPPPPTPPPPRPTPPPPAA
SDSPPALMSTSWLSYDEASMERPRFPPRVGLEHVLVVPEARAAFHNLCRS
AFCHESLAFIGDVTRYRAGILGQVGLEQGGGQLRGGMSTG
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mRNA from alignment at S-ischiensis_contig81:44590..47125+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig81.19856.1 ID=mRNA_S-ischiensis_contig81.19856.1|Name=mRNA_S-ischiensis_contig81.19856.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2536bp|location=Sequence derived from alignment at S-ischiensis_contig81:44590..47125+ (Schizocladia ischiensis KU_0333)
ATTCCCTGTGGTGCTTAGGCCCCTACATTATTAACAAGGGGAGCCGCTCG
TAGGGTGGGATCGTCACGGGGAGCCCGAATCTGTGGGGCGAATAACGTGA
GTCGTAGGAGCTGCAGCGACGAGGGTGCTTGTGGAGTCTTTGACGTCGGA
CAATATGTATGCGAACTCTGGGTTTGTCTCTCCGGGAAAGGTTCGGCCAA
AGCTGTTTTCTCCTGCGTCGTCAGGGAACCCCAACCGGGTGCCCAGTAGA
GCGGCCAAATGCCAACGACCTCGCCGCCCTTGCTTTCCGCTGGCCGACCT
GATGCTCCACGCTCATGTATCCGTAGATACATACGACCCTTGAGACGTTG
TTTCGTCCACAAAACGCCAAGACCGAGGATGCTTCTGTTGCTTTACGCGA
TGAAACCTGCCGTGTTTCACACGTTGCGATCCTGGCCCCCGCTTTGCGCC
AACCAGGTACGGGAAGATGATGGGGAAAATCATGCAACGCTCGGGCATCC
ACTACTTGCTCGGCTACGGTGGCACCTGCCCCACCCTGGGCGGCCGCCCC
GGCAGCGGCGGCGGCGGCGGCAGCGGCAGCAGCAGTGAAACTGCCGCACA
CCCAGCCCCCCAAGGCAGCGGTGCCTCGACCCCAACGTTGATGCCTGGCA
TTGGCCCCAGCTGGCCCGCGGGCGACAACCCAGAGGAGTGGAGCGACCGC
ACTGCTTCAGCTTCCAGGCAATCCGAGACTGGGCGGCAAGAAGAATCACA
CACGGCGGGCGCCGCCGCCGCCGCCGCCATCGACTTGGAGCGTGTGAACC
CGCCTGCCGCGGGCGCAACAACCGGGACCCGACACGCTCAGCCGCGGCGG
CGTTCCCTGCAGGCCCTGCGCATTCGCCTCCTGGGCAAAGGCAAAACAAC
CGCCCCGTGCTCCCAGCAGGCCGTTTTCCCGGCGCCTCGGCCCCACACCT
GCAGGGCCGGGGACGCTGCAGGAGGTGGCGGAAGCTGGAGTGGGGGGGTC
CACAGCCCTGGCAGGCGTTTCCATAGTGATGCGGGGCTGCAGCCCTCGCC
GTTTGTCCAGAGCAAGACCTCCGGCTCGCCTGCCATGGTGGCGCCACACG
CGGCGCTGGCGGCGGCGGGGTCCTCCTCCTCCTTCTCCTCCTCCTCAGCC
CCATGGTCGCTGCCGCCGCCGACGCGCGGGTCGGGCAGGTCAGTGGCACT
GCTTTCGGGGGCGTCATCCGCGGTGTCGCTGCTGCCGTCCCCGCTCGGGC
AAACCGCGCCGAGTCTGGACGGCGAAGAGGGTGATGTGGGCGAAGATAGC
GAGGATACTGATGGCGGTGCAGACGACGCGGCAGGTGTGGTGGGCTTCAG
CGCGTCGGCCGCCGCAGCTGCCGCAGGGGCGGGCGAGCTATCGCCTTCAC
CACCCGCATCACCGCTGCCAGCGCTGCTGCTGCCACGGCCCTCACTACCA
CAACCACCATCGCTGCTGTCGCCGCCTGAGCCGCAGCGAGCTTCGGGCGG
GCAGTTGCCTCATCCTCCTCCTCCTCCTTCGGTGCCGCCGCGGCAGTTCC
ATACGTCCTCTCCCCACCCCGAAGACCGCCGCCACCGTGAGGCGGCGGAC
GCGGCCCCCCTGCGCCTACCGCCTGCCAAGCCATGGGCCGTGCGATTGGG
CGGCGGCGGCACGATGGTGGCACCAGCGTGGGAAACAGGAGCTACTTGTA
CTTACATGAGTGCGAGTGCGGTCGCGCAAGAAGAGAGGGGAGAAGCGGTT
TCGGACGCTGCGGCCCCTGGGGACGGCTTGGACAAGGCGAGGAGCAGCAG
TGACAGGGAACTGACAAACGCCTCCGAGCTGTCCACAGCCGCCGTCTCCA
TCTCCTCTCCCGCTCCCCCTTCCCCGCCCACTCGGGCCCACCGCAGTGCC
ACCATCACCAGCGCCAACACCACCGCCCCCGACCTGTCCACAGCCGCCGC
CTTCGTCTCCTGTTCCGCTCCGTCTACCCCGCCTAGTCGCGCCCACCGCA
ACGCCACCGCCAGCACCAACGCCGTCGCCACCGCCACCACCGTCTCCACC
GCAACCTCACCCCCGCCGCCAACACAGTCGCCACCGCCGTGCCCTGCATC
GCCACCGCCAGCTACTTCCGATCTCACCACCAGCACCGCCGCCGCCGCCG
CCTGCGCCGGCGCCGCCGCCGTTGCCACTGCCGCCACCACCATTTCCACC
ACAACAACCTCGCCCCCGCCGCCGACACCGCCACCGCCGCGCCCTACACC
ACCACCGCCAGCTGCTTCCGATTCCCCCCCTGCCCTCATGTCAACCTCGT
GGCTGTCCTACGATGAGGCGTCCATGGAACGGCCCAGGTTCCCACCTAGG
GTGGGGCTGGAGCACGTCCTGGTGGTCCCGGAGGCCAGGGCGGCATTCCA
CAATCTGTGCAGAAGTGCCTTCTGCCACGAGTCGCTCGCGTTCATCGGGG
ATGTGACGCGCTACAGGGCGGGCATACTAGGACAGGTTGGGCTGGAGCAG
GGTGGGGGGCAGTTGCGAGGGGGCATGAGCACAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig81:44590..47125+

>mRNA_S-ischiensis_contig81.19856.1 ID=mRNA_S-ischiensis_contig81.19856.1|Name=mRNA_S-ischiensis_contig81.19856.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=4140bp|location=Sequence derived from alignment at S-ischiensis_contig81:44590..47125+ (Schizocladia ischiensis KU_0333)
ATGATGGGGAAAATCATGCAACGCTCGGGCATCCACTACTTGCTCGGCTA
CGGTGGCACCTGCCCCACCCTGGGCGGCCGCCCCGGCAGCGGCGGCGGCG
GCGGCAGCGGCAGCAGCAGTGAAACTGCCGCACACCCAGCCCCCCAAGGC
AGCGGTGCCTCGACCCCAACGTTGATGCCTGGCATTGGCCCCAGCTGGCC
CGCGGGCGACAACCCAGAGGAGTGGAGCGACCGCACTGCTTCAGCTTCCA
GGCAATCCGAGACTGGGCGGCAAGAAGAATCACACACGGCGGGCGCCGCC
GCCGCCGCCGCCATCGACTTGGAGCGTGTGAACCCGCCTGCCGCGGGCGC
AACAACCGGGACCCGACACGCTCAGCCGCGGCGGCGTTCCCTGCAGGCCC
TGCGCATTCGCCTCCTGGGCAAAGGCAAAACAACCGCCCCGTGCTCCCAG
CAGGCCGTTTTCCCGGCGCCTCGGCCCCACACCTGCAGGGCCGGGGACGC
TGCAGGAGGTGGCGGAAGCTGGAGTGGGGGGGTCCACAGCCCTGGCAGGC
GTTTCCATAGTGATGCGGGGCTGCAGCCCTCGCCGTTTGTCCAGAGCAAG
ACCTCCGGCTCGCCTGCCATGGTGGCGCCACACGCGGCGCTGGCGGCGGC
GGGGTCCTCCTCCTCCTTCTCCTCCTCCTCAGCCCCATGGTCGCTGCCGC
CGCCGACGCGCGGGTCGGGCAGGTCAGTGGCACTGCTTTCGGGGGCGTCA
TCCGCGGTGTCGCTGCTGCCGTCCCCGCTCGGGCAAACCGCGCCGAGTCT
GGACGGCGAAGAGGGTGATGTGGGCGAAGATAGCGAGGATACTGATGGCG
GTGCAGACGACGCGGCAGGTGTGGTGGGCTTCAGCGCGTCGGCCGCCGCA
GCTGCCGCAGGGGCGGGCGAGCTATCGCCTTCACCACCCGCATCACCGCT
GCCAGCGCTGCTGCTGCCACGGCCCTCACTACCACAACCACCATCGCTGC
TGTCGCCGCCTGAGCCGCAGCGAGCTTCGGGCGGGCAGTTGCCTCATCCT
CCTCCTCCTCCTTCGGTGCCGCCGCGGCAGTTCCATACGTCCTCTCCCCA
CCCCGAAGACCGCCGCCACCGTGAGGCGGCGGACGCGGCCCCCCTGCGCC
TACCGCCTGCCAAGCCATGGGCCGTGCGATTGGGCGGCGGCGGCACGATG
GTGGCACCAGCGTGGGAAACAGGAGCTACTTGTACTTACATGAGTGCGAG
TGCGGTCGCGCAAGAAGAGAGGGGAGAAGCGGTTTCGGACGCTGCGGCCC
CTGGGGACGGCTTGGACAAGGCGAGGAGCAGCAGTGACAGGGAACTGACA
AACGCCTCCGAGCTGTCCACAGCCGCCGTCTCCATCTCCTCTCCCGCTCC
CCCTTCCCCGCCCACTCGGGCCCACCGCAGTGCCACCATCACCAGCGCCA
ACACCACCGCCCCCGACCTGTCCACAGCCGCCGCCTTCGTCTCCTGTTCC
GCTCCGTCTACCCCGCCTAGTCGCGCCCACCGCAACGCCACCGCCAGCAC
CAACGCCGTCGCCACCGCCACCACCGTCTCCACCGCAACCTCACCCCCGC
CGCCAACACAGTCGCCACCGCCGTGCCCTGCATCGCCACCGCCAGCTACT
TCCGATCTCACCACCAGCACCGCCGCCGCCGCCGCCTGCGCCGGCGCCGC
CGCCGTTGCCACTGCCGCCACCACCATTTCCACCACAACAACCTCGCCCC
CGCCGCCGACACCGCCACCGCCGCGCCCTACACCACCACCGCCAGCTGCT
TCCGATTCCCCCCCTGCCCTCATGTCAACCTCGTGGCTGTCCTACGATGA
GGCGTCCATGGAACGGCCCAGGTTCCCACCTAGGGTGGGGCTGGAGCACG
TCCTGGTGGTCCCGGAGGCCAGGGCGGCATTCCACAATCTGTGCAGAAGT
GCCTTCTGCCACGAGTCGCTCGCGTTCATCGGGGATGTGACGCGCTACAG
GGCGGGCATACTAGGACAGGTTGGGCTGGAGCAGGGTGGGGGGCAGTTGC
GAGGGGGCATGAGCACAGGCATGATGGGGAAAATCATGCAACGCTCGGGC
ATCCACTACTTGCTCGGCTACGGTGGCACCTGCCCCACCCTGGGCGGCCG
CCCCGGCAGCGGCGGCGGCGGCGGCAGCGGCAGCAGCAGTGAAACTGCCG
CACACCCAGCCCCCCAAGGCAGCGGTGCCTCGACCCCAACGTTGATGCCT
GGCATTGGCCCCAGCTGGCCCGCGGGCGACAACCCAGAGGAGTGGAGCGA
CCGCACTGCTTCAGCTTCCAGGCAATCCGAGACTGGGCGGCAAGAAGAAT
CACACACGGCGGGCGCCGCCGCCGCCGCCGCCATCGACTTGGAGCGTGTG
AACCCGCCTGCCGCGGGCGCAACAACCGGGACCCGACACGCTCAGCCGCG
GCGGCGTTCCCTGCAGGCCCTGCGCATTCGCCTCCTGGGCAAAGGCAAAA
CAACCGCCCCGTGCTCCCAGCAGGCCGTTTTCCCGGCGCCTCGGCCCCAC
ACCTGCAGGGCCGGGGACGCTGCAGGAGGTGGCGGAAGCTGGAGTGGGGG
GGTCCACAGCCCTGGCAGGCGTTTCCATAGTGATGCGGGGCTGCAGCCCT
CGCCGTTTGTCCAGAGCAAGACCTCCGGCTCGCCTGCCATGGTGGCGCCA
CACGCGGCGCTGGCGGCGGCGGGGTCCTCCTCCTCCTTCTCCTCCTCCTC
AGCCCCATGGTCGCTGCCGCCGCCGACGCGCGGGTCGGGCAGGTCAGTGG
CACTGCTTTCGGGGGCGTCATCCGCGGTGTCGCTGCTGCCGTCCCCGCTC
GGGCAAACCGCGCCGAGTCTGGACGGCGAAGAGGGTGATGTGGGCGAAGA
TAGCGAGGATACTGATGGCGGTGCAGACGACGCGGCAGGTGTGGTGGGCT
TCAGCGCGTCGGCCGCCGCAGCTGCCGCAGGGGCGGGCGAGCTATCGCCT
TCACCACCCGCATCACCGCTGCCAGCGCTGCTGCTGCCACGGCCCTCACT
ACCACAACCACCATCGCTGCTGTCGCCGCCTGAGCCGCAGCGAGCTTCGG
GCGGGCAGTTGCCTCATCCTCCTCCTCCTCCTTCGGTGCCGCCGCGGCAG
TTCCATACGTCCTCTCCCCACCCCGAAGACCGCCGCCACCGTGAGGCGGC
GGACGCGGCCCCCCTGCGCCTACCGCCTGCCAAGCCATGGGCCGTGCGAT
TGGGCGGCGGCGGCACGATGGTGGCACCAGCGTGGGAAACAGGAGCTACT
TGTACTTACATGAGTGCGAGTGCGGTCGCGCAAGAAGAGAGGGGAGAAGC
GGTTTCGGACGCTGCGGCCCCTGGGGACGGCTTGGACAAGGCGAGGAGCA
GCAGTGACAGGGAACTGACAAACGCCTCCGAGCTGTCCACAGCCGCCGTC
TCCATCTCCTCTCCCGCTCCCCCTTCCCCGCCCACTCGGGCCCACCGCAG
TGCCACCATCACCAGCGCCAACACCACCGCCCCCGACCTGTCCACAGCCG
CCGCCTTCGTCTCCTGTTCCGCTCCGTCTACCCCGCCTAGTCGCGCCCAC
CGCAACGCCACCGCCAGCACCAACGCCGTCGCCACCGCCACCACCGTCTC
CACCGCAACCTCACCCCCGCCGCCAACACAGTCGCCACCGCCGTGCCCTG
CATCGCCACCGCCAGCTACTTCCGATCTCACCACCAGCACCGCCGCCGCC
GCCGCCTGCGCCGGCGCCGCCGCCGTTGCCACTGCCGCCACCACCATTTC
CACCACAACAACCTCGCCCCCGCCGCCGACACCGCCACCGCCGCGCCCTA
CACCACCACCGCCAGCTGCTTCCGATTCCCCCCCTGCCCTCATGTCAACC
TCGTGGCTGTCCTACGATGAGGCGTCCATGGAACGGCCCAGGTTCCCACC
TAGGGTGGGGCTGGAGCACGTCCTGGTGGTCCCGGAGGCCAGGGCGGCAT
TCCACAATCTGTGCAGAAGTGCCTTCTGCCACGAGTCGCTCGCGTTCATC
GGGGATGTGACGCGCTACAGGGCGGGCATACTAGGACAGGTTGGGCTGGA
GCAGGGTGGGGGGCAGTTGCGAGGGGGCATGAGCACAGGC
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