mRNA_S-ischiensis_contig81.19877.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig81.19877.1
Unique NamemRNA_S-ischiensis_contig81.19877.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig81contigS-ischiensis_contig81:300755..302567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size472
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817310.6004066-CDS-S-ischiensis_contig81:300755..3010381622817310.6004066-CDS-S-ischiensis_contig81:300755..301038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 300756..301038 -
1695741016.428064-CDS-S-ischiensis_contig81:300755..3010381695741016.428064-CDS-S-ischiensis_contig81:300755..301038Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 300756..301038 -
1622817310.6126053-CDS-S-ischiensis_contig81:302379..3025671622817310.6126053-CDS-S-ischiensis_contig81:302379..302567Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 302380..302567 -
1695741016.441009-CDS-S-ischiensis_contig81:302379..3025671695741016.441009-CDS-S-ischiensis_contig81:302379..302567Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 302380..302567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig81.19877.1prot_S-ischiensis_contig81.19877.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig81 300756..302567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig81.19877.1

>prot_S-ischiensis_contig81.19877.1 ID=prot_S-ischiensis_contig81.19877.1|Name=mRNA_S-ischiensis_contig81.19877.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
SAAATAPNTATRAAGASSSPAAAAAAAAVVAGTAASARAPSRHPLPATPA
CCGRGGFGERLPTALAAYTAGPQACRARLRAPRWTLVLPHAAPSHRLGGW
RRRRRRRPCRSRGARPSRAAGVATPGSRSRSGASLPPRPGAPRRCSSSPS
PCRGCRR
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mRNA from alignment at S-ischiensis_contig81:300755..302567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig81.19877.1 ID=mRNA_S-ischiensis_contig81.19877.1|Name=mRNA_S-ischiensis_contig81.19877.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1813bp|location=Sequence derived from alignment at S-ischiensis_contig81:300755..302567- (Schizocladia ischiensis KU_0333)
TCAGCGGCAGCCACAGCACCCAACACAGCCACCAGAGCAGCGGGGGCTTC
GTCATCGCCGGCGGCGGCAGCGGCGGCGGCGGCGGTGGTGGCGGGGACGG
CGGCCTCGGCGCGAGCACCCTCACGCCATCCTCTTCCAGCGACGCCAGCC
TGCTGTGGCCGCGGGGGTTTCGGGGAACGCCTTCCCACGTGAGTGAGGCA
GTGGTCCATCTGGCGGTCGTGATGTGATGTGATGTGCAACTACTGGATTT
TCGAGTGCACATAGCATCACATCACATGACACTGTGGACGTGGTGTCGAG
GTGGTGAGGGTGTGTGTTTTGGGGGGGGGTCTGTGTGTATGCGTGTGTTG
CATCCGTGCTCGGAGCGGTGGCAAGCCGGCTGTGTTGTGATGTGATGTGA
TGTGATGTGATGCCACGCTTAGCACTTCTCCGCTGCAGGTACGCGGTGTG
GTGGTTCTGCCTGCTCTGTTACTGCCTGCCGCGCCGTCGCCTGCCACAGC
CCCCCCCCCCCCCCCGGGGCGTACACACGCACCCCATCCCATTCCTGTCC
CTCCTCTTCCTTTCCCCCCCCCCCCCCTCCTCCTCCTCTGGCGAGCTAAG
GAAGGGCCGCTGCCGAGGTCTCTAGTAGCACGGCCCGCACCTCGCCCCGT
GTTGTTACTGTCAATACAGTACATTAGAGCGCATATCACATCACATCGCG
TCGCATCACACCACACCATCACATCAAATCGGTTTCTGCGCTGCCATGGA
ACCCGGTACATGTATGTGATCAGGGAGGGACGCGTGCCCGATGGCCTGCA
TGGGCGGTCAATGTGTGGCGCCTGTCCCGCGGTGCTCCGAGAAACACAAA
CACACGCATACACACACAGGCGCACAGCAATGGCATATCCATCAGCGCAT
AGTTGCCGGGCTTGACTGATTTTGTGGGTGGCGTTACTACAGAGACCCCT
CCTCCACTGTTGTTCCTTCCTGCCCTCTTCCTCCTTTGTTTTTCTTTGTC
TTTCTGCTCTATGTGCCCTGCGTGTGAAGGCGAGTGAAAAGACGGGCTTC
GGGCGCAGGGGGCCCTGAACTCGCGTAAGAAGGAACACCTCCTCTTTTCC
ACTCGCTTTTTATATTCATGCCAAAAACTACTTGGATTTAGTGTGGGTCA
AACTATCGAATATCGACTATCGATAGGTCGACGGCCTCGCCCCCGTCTGC
CCTACCCGCATGCCCCGCTGTGAGCACAAGAGACTCCCCTTCCCCGCCCC
TTCCCTTTCCCTGCCCGCCCCGTTCTTTCCTTATTTGTGTTTTCTGTTTG
CCCTGCGAGGGGAAGAAGGGCTTCGTTGAGTCCCGTTTCGGGACGAGCCT
TTTGGCACGGGGCCTGGAACTCGCCGCTTCTCTACCACCCAAAATAGATC
AGCACTGTCGATAAATAGGTTGATTTGCGTAGATATTCCATCAATGCATA
CAGATGGGACACCGCCCCAGCCCGGCCTCCTCCTCCTCCGTCCCCGCTGC
CACCACCCCGTCGTAACCCCCCTCCGCAGGGCTCTGGCGGCTTATACGGC
AGGGCCGCAAGCATGTCGGGCCCGTCTCCGCGCACCTCGTTGGACCCTGG
TGCTGCCTCACGCCGCGCCCAGCCACCGCCTGGGGGGCTGGCGGCGGCGG
CGGCGCCGGCGCCCCTGTCGGTCTCGGGGGGCTCGACCGTCTCGGGCAGC
AGGAGTAGCAACCCCTGGCAGTCGCAGTCGGAGCGGGGCTTCCCTTCCCC
CGCGGCCTGGGGCGCCTCGCCGATGCAGCAGCAGTCCCAGTCCTTGCCGG
GGATGCCGGCGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig81:300755..302567-

>mRNA_S-ischiensis_contig81.19877.1 ID=mRNA_S-ischiensis_contig81.19877.1|Name=mRNA_S-ischiensis_contig81.19877.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig81:300755..302567- (Schizocladia ischiensis KU_0333)
TCAGCGGCAGCCACAGCACCCAACACAGCCACCAGAGCAGCGGGGGCTTC
GTCATCGCCGGCGGCGGCAGCGGCGGCGGCGGCGGTGGTGGCGGGGACGG
CGGCCTCGGCGCGAGCACCCTCACGCCATCCTCTTCCAGCGACGCCAGCC
TGCTGTGGCCGCGGGGGTTTCGGGGAACGCCTTCCCACTCAGCGGCAGCC
ACAGCACCCAACACAGCCACCAGAGCAGCGGGGGCTTCGTCATCGCCGGC
GGCGGCAGCGGCGGCGGCGGCGGTGGTGGCGGGGACGGCGGCCTCGGCGC
GAGCACCCTCACGCCATCCTCTTCCAGCGACGCCAGCCTGCTGTGGCCGC
GGGGGTTTCGGGGAACGCCTTCCCACGGCTCTGGCGGCTTATACGGCAGG
GCCGCAAGCATGTCGGGCCCGTCTCCGCGCACCTCGTTGGACCCTGGTGC
TGCCTCACGCCGCGCCCAGCCACCGCCTGGGGGGCTGGCGGCGGCGGCGG
CGCCGGCGCCCCTGTCGGTCTCGGGGGGCTCGACCGTCTCGGGCAGCAGG
AGTAGCAACCCCTGGCAGTCGCAGTCGGAGCGGGGCTTCCCTTCCCCCGC
GGCCTGGGGCGCCTCGCCGATGCAGCAGCAGTCCCAGTCCTTGCCGGGGA
TGCCGGCGCGGCTCTGGCGGCTTATACGGCAGGGCCGCAAGCATGTCGGG
CCCGTCTCCGCGCACCTCGTTGGACCCTGGTGCTGCCTCACGCCGCGCCC
AGCCACCGCCTGGGGGGCTGGCGGCGGCGGCGGCGCCGGCGCCCCTGTCG
GTCTCGGGGGGCTCGACCGTCTCGGGCAGCAGGAGTAGCAACCCCTGGCA
GTCGCAGTCGGAGCGGGGCTTCCCTTCCCCCGCGGCCTGGGGCGCCTCGC
CGATGCAGCAGCAGTCCCAGTCCTTGCCGGGGATGCCGGCGC
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