mRNA_S-ischiensis_contig11.2081.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2081.1
Unique NamemRNA_S-ischiensis_contig11.2081.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1036821..1038087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size467
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2081.1prot_S-ischiensis_contig11.2081.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1036821..1038085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.2140026-CDS-S-ischiensis_contig11:1036820..10369251622815577.2140026-CDS-S-ischiensis_contig11:1036820..1036925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1036821..1036925 +
1695739781.3245964-CDS-S-ischiensis_contig11:1036820..10369251695739781.3245964-CDS-S-ischiensis_contig11:1036820..1036925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1036821..1036925 +
1622815577.2293396-CDS-S-ischiensis_contig11:1037034..10371351622815577.2293396-CDS-S-ischiensis_contig11:1037034..1037135Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1037035..1037135 +
1695739781.33358-CDS-S-ischiensis_contig11:1037034..10371351695739781.33358-CDS-S-ischiensis_contig11:1037034..1037135Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1037035..1037135 +
1622815577.2406135-CDS-S-ischiensis_contig11:1037426..10376131622815577.2406135-CDS-S-ischiensis_contig11:1037426..1037613Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1037427..1037613 +
1695739781.3425503-CDS-S-ischiensis_contig11:1037426..10376131695739781.3425503-CDS-S-ischiensis_contig11:1037426..1037613Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1037427..1037613 +
1622815577.2529411-CDS-S-ischiensis_contig11:1038013..10380851622815577.2529411-CDS-S-ischiensis_contig11:1038013..1038085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1038014..1038085 +
1695739781.3518224-CDS-S-ischiensis_contig11:1038013..10380851695739781.3518224-CDS-S-ischiensis_contig11:1038013..1038085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1038014..1038085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2081.1

>prot_S-ischiensis_contig11.2081.1 ID=prot_S-ischiensis_contig11.2081.1|Name=mRNA_S-ischiensis_contig11.2081.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
SAGKPPQFVFGRGYGHTGENCIYHTGDPCIVAAVQLPGSALRARGLHHLW
RVDIAGGTCHKTRLGHSHSCVSPAGWGQVGRSGGAYDCGAGPLLVGHGGL
ERLPRERGRHARRHDRNRAENPPAPVERGQEPASPRGRVASGVAGEGDPA
AGAPQ
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mRNA from alignment at S-ischiensis_contig11:1036821..1038087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2081.1 ID=mRNA_S-ischiensis_contig11.2081.1|Name=mRNA_S-ischiensis_contig11.2081.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1267bp|location=Sequence derived from alignment at S-ischiensis_contig11:1036821..1038087+ (Schizocladia ischiensis KU_0333)
AGTGCGGGGAAGCCCCCTCAATTCGTGTTTGGGCGAGGGTATGGCCATAC
TGGGGAAAACTGCATTTACCATACTGGGGACCCTTGCATCGTTGCTGCTG
TACAGGTGAATTGATATCTGGTACATACTTGCAGGCACAGCCCCGCGATG
CGCCGATGCCATGTTCTTGGGAGGGTTCCCGTCCTGACGCGCTGCCCCTG
CCCGTTACATCCAGCTACCTGGATCTGCTCTTCGGGCCCGTGGGCTTCAT
CATCTCTGGCGCGTTGATATTGCTGGTGGTACGTGTCACAAGACGCGGCT
GGGGCACAGCCACAGGTACGGCCATAGGCCCACAGAGATACACTGGCAAC
TGGTGCACCATTCCCCGCGCAAGAGCTCGTAATTTTACAAGACGAACGGA
GTACCCCGCACGCCCTGAAGCCTGAGACTCAGGCTGAGAGAGTCATGGGC
CGACGGTGGAGTCGTCTCCTGCCTACTCGTGTGCTGTTTCTTCGTTTGTA
CCACGGCGTGTTGGCAGCCATTTGTCCCTTCCCCCGCCAAGGTGCCTCTC
GCTCCCCCCTCGCTCCCTATGCAATTCCCGTCCGCCCGCCATTGCCCTGT
CTGAAGCTGTGTTAGCCCTGCTGGGTGGGGCCAAGTGGGCAGGAGTGGAG
GCGCTTATGATTGCGGTGCTGGTCCTCTACTTGTGGGCCATGGGGGCCTC
GAGCGTCTTCCGCGAGAAAGAGGACGACACGCACGTCGACATGACAGAAA
TCGAGCAGAAAATCCGCCAGCTCCTGTGGAAAGAGGACAAGAGGCGAGTG
TATATGTGTGTGTGTGTCTGCGTGCGTGCGTGCGCGAGTGTGCATGCGCT
GAGGTTGTGCATGCCATGGCATAATCGCGCCCCATGCGACATTTGGACCA
TCGCTTGTGTTGTCATGTTTTGAATGGCAGGGACTCCTCTGCTGGTCTTT
ACGTTGGTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCCTCCTCGTCC
TCCCCCTCCTCCCCCTCCTCCTCTTCCCCACCCCCCCCCCTCGTCCGCAT
CGCGCCGCGTCGTGGCTTGCCCCTCCGGCCTTGCCTTGCCTCCACCCCGC
ACGGTCACCTGGCCATGGTCGTCCGCCAATCGCCGCTGGGACGTCCGTCT
GTTCATCGTGATCCGTCGGGATGGATGCGCTGAGGAAGTTCAGCCAGCTT
CACCGCGTGGACGGGTGGCTTCAGGAGTGGCGGGGGAGGGAGATCCAGCT
GCTGGCGCACCTCAAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1036821..1038087+

>mRNA_S-ischiensis_contig11.2081.1 ID=mRNA_S-ischiensis_contig11.2081.1|Name=mRNA_S-ischiensis_contig11.2081.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig11:1036821..1038087+ (Schizocladia ischiensis KU_0333)
AGTGCGGGGAAGCCCCCTCAATTCGTGTTTGGGCGAGGGTATGGCCATAC
TGGGGAAAACTGCATTTACCATACTGGGGACCCTTGCATCGTTGCTGCTG
TACAGAGTGCGGGGAAGCCCCCTCAATTCGTGTTTGGGCGAGGGTATGGC
CATACTGGGGAAAACTGCATTTACCATACTGGGGACCCTTGCATCGTTGC
TGCTGTACAGCTACCTGGATCTGCTCTTCGGGCCCGTGGGCTTCATCATC
TCTGGCGCGTTGATATTGCTGGTGGTACGTGTCACAAGACGCGGCTGGGG
CACAGCCACAGCTACCTGGATCTGCTCTTCGGGCCCGTGGGCTTCATCAT
CTCTGGCGCGTTGATATTGCTGGTGGTACGTGTCACAAGACGCGGCTGGG
GCACAGCCACAGCTGTGTTAGCCCTGCTGGGTGGGGCCAAGTGGGCAGGA
GTGGAGGCGCTTATGATTGCGGTGCTGGTCCTCTACTTGTGGGCCATGGG
GGCCTCGAGCGTCTTCCGCGAGAAAGAGGACGACACGCACGTCGACATGA
CAGAAATCGAGCAGAAAATCCGCCAGCTCCTGTGGAAAGAGGACAAGAGC
TGTGTTAGCCCTGCTGGGTGGGGCCAAGTGGGCAGGAGTGGAGGCGCTTA
TGATTGCGGTGCTGGTCCTCTACTTGTGGGCCATGGGGGCCTCGAGCGTC
TTCCGCGAGAAAGAGGACGACACGCACGTCGACATGACAGAAATCGAGCA
GAAAATCCGCCAGCTCCTGTGGAAAGAGGACAAGAGCCAGCTTCACCGCG
TGGACGGGTGGCTTCAGGAGTGGCGGGGGAGGGAGATCCAGCTGCTGGCG
CACCTCAACCAGCTTCACCGCGTGGACGGGTGGCTTCAGGAGTGGCGGGG
GAGGGAGATCCAGCTGCTGGCGCACCTCAA
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