mRNA_S-ischiensis_contig11.2067.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2067.1
Unique NamemRNA_S-ischiensis_contig11.2067.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:874199..874632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.11953-CDS-S-ischiensis_contig11:874198..8743211622815577.11953-CDS-S-ischiensis_contig11:874198..874321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 874199..874321 +
1695739781.2849746-CDS-S-ischiensis_contig11:874198..8743211695739781.2849746-CDS-S-ischiensis_contig11:874198..874321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 874199..874321 +
1622815577.1352904-CDS-S-ischiensis_contig11:874477..8746301622815577.1352904-CDS-S-ischiensis_contig11:874477..874630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 874478..874630 +
1695739781.2964377-CDS-S-ischiensis_contig11:874477..8746301695739781.2964377-CDS-S-ischiensis_contig11:874477..874630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 874478..874630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2067.1prot_S-ischiensis_contig11.2067.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 874199..874630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2067.1

>prot_S-ischiensis_contig11.2067.1 ID=prot_S-ischiensis_contig11.2067.1|Name=mRNA_S-ischiensis_contig11.2067.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=92bp
SSRGKWAAWGRTRCFWASSWLLSLRPGDSPQDNHTTLSQLERVSSAAIRG
VLPTDGSTVGHGGHWGCGHNLAGVEQEAKEEGIRLTWEGKTV
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mRNA from alignment at S-ischiensis_contig11:874199..874632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2067.1 ID=mRNA_S-ischiensis_contig11.2067.1|Name=mRNA_S-ischiensis_contig11.2067.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=434bp|location=Sequence derived from alignment at S-ischiensis_contig11:874199..874632+ (Schizocladia ischiensis KU_0333)
AGCAGCAGAGGGAAATGGGCGGCTTGGGGGAGAACCCGCTGCTTCTGGGC
GTCGTCTTGGCTTCTCTCGCTACGGCCAGGGGATTCCCCACAGGACAATC
ACACCACCCTTTCCCAGCTCGAGGTAGGGAGCAGTTTCCCTTGCGTTTTT
TCGTGCATGTTTCGCAGCCCTGGTTTGAGCGCCGCCCATCTGTTTTTTTC
GAGCCGCCCGCGTTTTGCCGCCGATCATGGAACGTGCGCCCCTTGATCAT
CCCGCTGGATGATTTTCCCCGTCATGCAGCGTGTTTCCAGCGCGGCCATC
CGCGGCGTCCTCCCCACGGACGGGAGCACGGTGGGTCACGGAGGGCACTG
GGGATGTGGCCACAACCTTGCAGGTGTGGAGCAAGAGGCAAAAGAAGAAG
GAATTCGCCTTACATGGGAGGGAAAAACCGTGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:874199..874632+

>mRNA_S-ischiensis_contig11.2067.1 ID=mRNA_S-ischiensis_contig11.2067.1|Name=mRNA_S-ischiensis_contig11.2067.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig11:874199..874632+ (Schizocladia ischiensis KU_0333)
AGCAGCAGAGGGAAATGGGCGGCTTGGGGGAGAACCCGCTGCTTCTGGGC
GTCGTCTTGGCTTCTCTCGCTACGGCCAGGGGATTCCCCACAGGACAATC
ACACCACCCTTTCCCAGCTCGAGAGCAGCAGAGGGAAATGGGCGGCTTGG
GGGAGAACCCGCTGCTTCTGGGCGTCGTCTTGGCTTCTCTCGCTACGGCC
AGGGGATTCCCCACAGGACAATCACACCACCCTTTCCCAGCTCGAGCGTG
TTTCCAGCGCGGCCATCCGCGGCGTCCTCCCCACGGACGGGAGCACGGTG
GGTCACGGAGGGCACTGGGGATGTGGCCACAACCTTGCAGGTGTGGAGCA
AGAGGCAAAAGAAGAAGGAATTCGCCTTACATGGGAGGGAAAAACCGTGC
GTGTTTCCAGCGCGGCCATCCGCGGCGTCCTCCCCACGGACGGGAGCACG
GTGGGTCACGGAGGGCACTGGGGATGTGGCCACAACCTTGCAGGTGTGGA
GCAAGAGGCAAAAGAAGAAGGAATTCGCCTTACATGGGAGGGAAAAACCG
TG
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