mRNA_S-ischiensis_contig8.19561.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19561.1
Unique NamemRNA_S-ischiensis_contig8.19561.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19561.1 vs. uniprot
Match: A0A6H5KU01_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU01_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.390e-25
Identity = 58/96 (60.42%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:   10 VRRLRRRAQATVLEAAQRLEEGLEGFDQPYKRYDWRRTGRVPPAEFRRATASAGFPFSRGEAACLAFAFGDGRTVGYSKFLAWATPEGPGKDALYA 297
            V +L RRAQAT++EAAQR++   E FD+PY RYDWRRTGRV  A F R+TA  GFPF+R +AA LA  FGDG  V Y  FL+WATP   G D L A
Sbjct:  144 VGKLLRRAQATIVEAAQRMDSDFEAFDRPYLRYDWRRTGRVGTAAFVRSTARCGFPFTRAQAAFLAGVFGDGSDVSYPTFLSWATP---GPDGLAA 236
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BLAST of mRNA_S-ischiensis_contig8.19561.1 vs. uniprot
Match: D8LSF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF6_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.360e-24
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   10 VRRLRRRAQATVLEAAQRLEEGLEGFDQPYKRYDWRRTGRVPPAEFRRATASAGFPFSRGEAACLAFAFGDGRTVGYSKFLAWATPEGPGKDALYA 297
            V +L RRAQAT++EAAQR++   E FD+PY  YDWRRTGRV  AEF R+T   GFPF+R +AA LA  FGDG  V Y  FL+WATP   G D L A
Sbjct:  137 VGKLLRRAQATIVEAAQRMDSDFEAFDRPYLCYDWRRTGRVGTAEFVRSTVRCGFPFTRAQAAFLAGVFGDGSDVSYPTFLSWATP---GPDGLAA 229
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BLAST of mRNA_S-ischiensis_contig8.19561.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.540e-17
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 EVDVRRLRRRAQATVLEAAQRLEEGLEGFDQPYKRYDWRRTGRVPPAEFRRATASAGFPFSRGEAACLAFAFGDGRTVGYSKFLAWATPEG 273
            E+D   LRRRA+A V EAAQR    L      +  YDWR TGR        A  +AGFPF+R E A LA  FGDG TV Y +FLAWATP+G
Sbjct: 1922 EIDAAALRRRAKAAVAEAAQRCGGDLSELTAAFSHYDWRETGR--------ALQTAGFPFTRAEGAALAGRFGDGATVAYPQFLAWATPQG 2004
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KU01_9PHAE3.390e-2560.42EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LSF6_ECTSI2.360e-2459.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CCF4_9STRA6.540e-1752.75EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2207737..2208665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size319
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19561.1prot_S-ischiensis_contig8.19561.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2207737..2208664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.0846674-CDS-S-ischiensis_contig8:2207736..22077961622817289.0846674-CDS-S-ischiensis_contig8:2207736..2207796Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2207737..2207796 +
1695740998.8385131-CDS-S-ischiensis_contig8:2207736..22077961695740998.8385131-CDS-S-ischiensis_contig8:2207736..2207796Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2207737..2207796 +
1622817289.0961716-CDS-S-ischiensis_contig8:2208148..22082161622817289.0961716-CDS-S-ischiensis_contig8:2208148..2208216Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2208149..2208216 +
1695740998.8513372-CDS-S-ischiensis_contig8:2208148..22082161695740998.8513372-CDS-S-ischiensis_contig8:2208148..2208216Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2208149..2208216 +
1622817289.1075804-CDS-S-ischiensis_contig8:2208474..22086641622817289.1075804-CDS-S-ischiensis_contig8:2208474..2208664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2208475..2208664 +
1695740998.889471-CDS-S-ischiensis_contig8:2208474..22086641695740998.889471-CDS-S-ischiensis_contig8:2208474..2208664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2208475..2208664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19561.1

>prot_S-ischiensis_contig8.19561.1 ID=prot_S-ischiensis_contig8.19561.1|Name=mRNA_S-ischiensis_contig8.19561.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
EVDVRRLRRRAQATVLEAAQRLEEGLEGFDQPYKRYDWRRTGRVPPAEFR
RATASAGFPFSRGEAACLAFAFGDGRTVGYSKFLAWATPEGPGKDALYAG
VEDHDG
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mRNA from alignment at S-ischiensis_contig8:2207737..2208665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19561.1 ID=mRNA_S-ischiensis_contig8.19561.1|Name=mRNA_S-ischiensis_contig8.19561.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=929bp|location=Sequence derived from alignment at S-ischiensis_contig8:2207737..2208665+ (Schizocladia ischiensis KU_0333)
GAGGTGGATGTGCGGAGGCTGCGGCGGCGGGCCCAGGCAACGGTACTGGA
AGCGGCGCAGGTGTGTGTGGGCGGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCCTGTATGTGTGCATGTGCGCGTGCCTGCATGCACGCGTGTGCTTGCC
CTGTCTTCCCCTCAGCCTGAGACCTTTTTTTGCCCCACCTCCCCACCCCT
CTGTTCCCCGCCCCCACCCGCCCTCCCGTCCTTCTGTCCGCTCCTCTATC
GCCCGCGCCCCGTCGTGCCGTTGGGCTGCTGGACCCGCGTGCGCTTTCCT
CCTCCTCCTCCTCCTCCTCACCATCATCATCATCATCATCATCCTCCTCC
TCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCCACCGGC
GCCCGTTCGCAGCGCCTCGAGGAGGGCCTGGAAGGCTTCGACCAGCCGTA
CAAGCGCTACGACTGGCGCCGGACTGGCAGGTGCGACAACAACCATTGGC
ACGCGCGCATAGCGCGTCTATTGGGGGGGCGAACAAGACCAGACCCAAAG
GCGGAAGCAGCATGAGTTGTGTGATCGTCGACATAGCCACACAAAGACGA
CGACCACCACCACCACCACCACCACCAAATCGACAACCCTGCCCCTGCCC
TCACCTCCCTTCCCCTCCTTTCCGCCCCCGCTCCCCCCGGGTTCCCCCCT
CATCCCTCCCTCCCCCCTCGCCCCCCGCCACCCCCCAGGGTCCCCCCCGC
AGAGTTCAGACGCGCGACGGCGTCCGCGGGCTTCCCCTTCTCCCGCGGGG
AGGCCGCCTGCCTGGCGTTCGCCTTCGGGGATGGCCGCACCGTTGGGTAC
TCCAAGTTCCTCGCTTGGGCCACCCCGGAGGGCCCCGGCAAGGACGCCCT
GTATGCCGGCGTCGAAGACCACGACGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2207737..2208665+

>mRNA_S-ischiensis_contig8.19561.1 ID=mRNA_S-ischiensis_contig8.19561.1|Name=mRNA_S-ischiensis_contig8.19561.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig8:2207737..2208665+ (Schizocladia ischiensis KU_0333)
GAGGTGGATGTGCGGAGGCTGCGGCGGCGGGCCCAGGCAACGGTACTGGA
AGCGGCGCAGGAGGTGGATGTGCGGAGGCTGCGGCGGCGGGCCCAGGCAA
CGGTACTGGAAGCGGCGCAGCGCCTCGAGGAGGGCCTGGAAGGCTTCGAC
CAGCCGTACAAGCGCTACGACTGGCGCCGGACTGGCAGCGCCTCGAGGAG
GGCCTGGAAGGCTTCGACCAGCCGTACAAGCGCTACGACTGGCGCCGGAC
TGGCAGGGTCCCCCCCGCAGAGTTCAGACGCGCGACGGCGTCCGCGGGCT
TCCCCTTCTCCCGCGGGGAGGCCGCCTGCCTGGCGTTCGCCTTCGGGGAT
GGCCGCACCGTTGGGTACTCCAAGTTCCTCGCTTGGGCCACCCCGGAGGG
CCCCGGCAAGGACGCCCTGTATGCCGGCGTCGAAGACCACGACGGGGGTC
CCCCCCGCAGAGTTCAGACGCGCGACGGCGTCCGCGGGCTTCCCCTTCTC
CCGCGGGGAGGCCGCCTGCCTGGCGTTCGCCTTCGGGGATGGCCGCACCG
TTGGGTACTCCAAGTTCCTCGCTTGGGCCACCCCGGAGGGCCCCGGCAAG
GACGCCCTGTATGCCGGCGTCGAAGACCACGACGGG
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