mRNA_S-ischiensis_contig8.19460.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19460.1
Unique NamemRNA_S-ischiensis_contig8.19460.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A453FVP7_AEGTS (Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FVP7_AEGTS)

HSP 1 Score: 204 bits (520), Expect = 2.830e-66
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 SVFAQQATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            S +++QA MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   18 SSYSEQAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 128
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A2P5A853_PARAD (Histone H4 (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5A853_PARAD)

HSP 1 Score: 202 bits (515), Expect = 3.830e-65
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 SVFAQQATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            S+F   + MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   44 SIFRPSSAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 154
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A7S3CDM2_9CHLO (Histone H4 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S3CDM2_9CHLO)

HSP 1 Score: 201 bits (512), Expect = 5.350e-65
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:   19 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   28 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 132
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A453MYX0_AEGTS (Histone H4 n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MYX0_AEGTS)

HSP 1 Score: 201 bits (512), Expect = 5.530e-65
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:   13 QQATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            +++TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   27 EESTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 133
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A452ZB17_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZB17_AEGTS)

HSP 1 Score: 201 bits (511), Expect = 6.260e-65
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:   19 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A6P3GRU7_BISBI (Histone H4 n=2 Tax=Metazoa TaxID=33208 RepID=A0A6P3GRU7_BISBI)

HSP 1 Score: 200 bits (509), Expect = 7.540e-65
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:   19 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A453J6R2_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J6R2_AEGTS)

HSP 1 Score: 201 bits (511), Expect = 8.660e-65
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:   13 QQATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            QQ  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   30 QQPAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A6P6D7E2_OCTDE (Histone H4 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6D7E2_OCTDE)

HSP 1 Score: 201 bits (511), Expect = 9.250e-65
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 SVFAQQATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            S F   A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   28 SCFTSCAVMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 138
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BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A445HFY4_GLYSO (Histone H4 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HFY4_GLYSO)

HSP 1 Score: 202 bits (513), Expect = 9.390e-65
Identity = 103/107 (96.26%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:   13 QQATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            ++ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   54 RRATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 160
[Close]
BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Match: A0A6J0X074_ODOVR (Histone H4 n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A6J0X074_ODOVR)

HSP 1 Score: 200 bits (509), Expect = 1.040e-64
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:   19 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 333
            ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 120
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453FVP7_AEGTS2.830e-6693.69Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=... [more]
A0A2P5A853_PARAD3.830e-6592.79Histone H4 (Fragment) n=1 Tax=Parasponia andersoni... [more]
A0A7S3CDM2_9CHLO5.350e-6599.05Histone H4 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7... [more]
A0A453MYX0_AEGTS5.530e-6595.33Histone H4 n=4 Tax=Aegilops tauschii subsp. strang... [more]
A0A452ZB17_AEGTS6.260e-6598.10Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A6P3GRU7_BISBI7.540e-6598.10Histone H4 n=2 Tax=Metazoa TaxID=33208 RepID=A0A6P... [more]
A0A453J6R2_AEGTS8.660e-6596.26Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A6P6D7E2_OCTDE9.250e-6593.69Histone H4 n=1 Tax=Octodon degus TaxID=10160 RepID... [more]
A0A445HFY4_GLYSO9.390e-6596.26Histone H4 n=1 Tax=Glycine soja TaxID=3848 RepID=A... [more]
A0A6J0X074_ODOVR1.040e-6498.10Histone H4 n=2 Tax=Laurasiatheria TaxID=314145 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1582439..1582774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
Ec32 ortholog descriptionHistone H4
Ec32 orthologEc-07_000480.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817282.9041886-CDS-S-ischiensis_contig8:1582438..15827501622817282.9041886-CDS-S-ischiensis_contig8:1582438..1582750Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1582439..1582750 -
1695740994.081003-CDS-S-ischiensis_contig8:1582438..15827501695740994.081003-CDS-S-ischiensis_contig8:1582438..1582750Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1582439..1582750 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817282.917772-UTR-S-ischiensis_contig8:1582750..15827741622817282.917772-UTR-S-ischiensis_contig8:1582750..1582774Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1582751..1582774 -
1695740994.0953574-UTR-S-ischiensis_contig8:1582750..15827741695740994.0953574-UTR-S-ischiensis_contig8:1582750..1582774Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1582751..1582774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19460.1prot_S-ischiensis_contig8.19460.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1582439..1582750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19460.1

>prot_S-ischiensis_contig8.19460.1 ID=prot_S-ischiensis_contig8.19460.1|Name=mRNA_S-ischiensis_contig8.19460.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at S-ischiensis_contig8:1582439..1582774-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19460.1 ID=mRNA_S-ischiensis_contig8.19460.1|Name=mRNA_S-ischiensis_contig8.19460.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=336bp|location=Sequence derived from alignment at S-ischiensis_contig8:1582439..1582774- (Schizocladia ischiensis KU_0333)
AGCGTCTTCGCACAACAAGCAACAATGTCTGGCCGTGGCAAGGGAGGCAA
GGGTCTGGGCAAGGGCGGCGCCAAGCGCCACCGCAAGGTGCTGCGCGACA
ACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGCCGTGGC
GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACCCGCGGCGTGCT
CAAGGTGTTCCTCGAGAACGTGATCCGCGACTCCGTGACCTACACCGAGC
ACGCCCGCCGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTCAAG
CGCCAGGGCCGCACCCTGTACGGCTTCGGTGGGTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1582439..1582774-

>mRNA_S-ischiensis_contig8.19460.1 ID=mRNA_S-ischiensis_contig8.19460.1|Name=mRNA_S-ischiensis_contig8.19460.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig8:1582439..1582774- (Schizocladia ischiensis KU_0333)
ATGTCTGGCCGTGGCAAGGGAGGCAAGGGTCTGGGCAAGGGCGGCGCCAA
GCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTCAAGCGCATCTCGGGCCTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTGAT
CCGCGACTCCGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTCACCG
CCATGGACGTCGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGC
TTCGGTGGGTAAATGTCTGGCCGTGGCAAGGGAGGCAAGGGTCTGGGCAA
GGGCGGCGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCA
TCACCAAGCCGGCCATCCGCCGCCTGGCTCGCCGTGGCGGTGTCAAGCGC
ATCTCGGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCT
CGAGAACGTGATCCGCGACTCCGTGACCTACACCGAGCACGCCCGCCGGA
AGACCGTCACCGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGGGCCGC
ACCCTGTACGGCTTCGGTGGGTAA
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