mRNA_S-ischiensis_contig8.19454.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19454.1
Unique NamemRNA_S-ischiensis_contig8.19454.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.550e-56
Identity = 112/255 (43.92%), Postives = 154/255 (60.39%), Query Frame = 2
Query:  215 PCPWLSDLLKKPLDVKEVEEAGEDLAPFKGASDASRQLTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCTVCSMRIKRTNSYWITGDGIRVWCQRCHIASPAEIPNHVGLEGATAD 979
            P P L+ +  + +D +E+E A  D       S ASR++T LS   P +L+ HVQALRL+ Y+V  +  +L   M+ G    RG+FNVPVDP + G+PDYF R+P PMDLGT+KS LL+M Y T + FA+DVRL ++NA+ FN + + V+ WA Q L  F+    +          K+  HSC +C G+  C LCG+ CL+LEPP+I C  C+ R+ R   Y IT DG R+WC RCH   P E+P     EG  A+
Sbjct:  526 PSPSLAAIFGRQVDKEELETA-HDGTEHVQTSLASRRVTALSAAAPKELASHVQALRLD-YLVQKVRPILTKLMSSGTGPQRGLFNVPVDPLKLGIPDYFKRVPHPMDLGTIKSRLLSMSYATPEEFASDVRLVFKNAIGFNPETHFVHTWAVQLLNEFDQEYSKQIGKLDEGWAKSLSHSCQLCQGQ-TCTLCGDKCLKLEPPVIICHHCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPTDGDPEGIVAE 777          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: D7FK57_ECTSI (Zinc finger, TAZ-type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK57_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 4.310e-56
Identity = 112/255 (43.92%), Postives = 153/255 (60.00%), Query Frame = 2
Query:  215 PCPWLSDLLKKPLDVKEVEEAGEDLAPFKGASDASRQLTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCTVCSMRIKRTNSYWITGDGIRVWCQRCHIASPAEIPNHVGLEGATAD 979
            P P L+ +  + +D  E+E A  D       S ASR++T LS   P +L+ HVQALRL+ Y+V  +  +L   M+ G    RG+FNVPVDP + G+PDYF R+P PMDLGT+KS LL+M Y T + FA+DVRL ++NA+ FN + + V+ WA Q L  F+    +          K+  HSC +C G+  C LCG+ CL+LEPP+I C  C+ R+ R   Y IT DG R+WC RCH   P E+P     EG  A+
Sbjct:  538 PSPSLAAIFGRQVDKGELETA-HDGTEHVQTSLASRRVTALSAAAPKELASHVQALRLD-YLVQKVRPILTKLMSSGTGPQRGLFNVPVDPLKLGIPDYFKRVPHPMDLGTIKSRLLSMSYTTPEEFASDVRLVFKNAIGFNPETHFVHTWAVQLLNEFDQEYSKQIGKLDEGWAKSLSHSCQLCQGQ-TCTLCGDKCLKLEPPVIICHHCNKRVVRGGVYHITRDGCRLWCSRCHPGLPPELPTDGDPEGIVAE 789          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 9.510e-41
Identity = 90/215 (41.86%), Postives = 126/215 (58.60%), Query Frame = 2
Query:  305 ASDASRQLTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCT-VCSMRIKRTNSYWITGDGIRVWCQRCHIASPAEIP 946
            A+DAS  L+ LS  TP  L  H+QALR + +++  +  VL   M+   N N G+FN PVDP    +P+Y   I +PMD GTVK  L ++ Y    AFAAD RL   NA++FN  ++ V+  A      F+A   + +    R+  K  +H C +C G+  C LCG+ CLRLEPP++ C   CS RIKR   ++++ D  RVWCQ+CH   PAE+P
Sbjct:    2 ATDASLSLSALSVATPEDLVSHLQALRRD-FILRVLRPVLNRLMSHTSNRN-GLFNTPVDPVALNIPNYLDVISQPMDFGTVKCRLFSLEYDEADAFAADARLVLSNAITFNPPSHPVHQCAVALQAEFDAEYSKAQTRLVRDAQKKDEHHCTLCQGQ-TCALCGDKCLRLEPPVLICHGPCSARIKRGCVFYVSPDACRVWCQKCHAQLPAELP 213          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A812UDS9_9DINO (GTE12 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UDS9_9DINO)

HSP 1 Score: 150 bits (378), Expect = 1.470e-36
Identity = 80/198 (40.40%), Postives = 118/198 (59.60%), Query Frame = 2
Query:  326 LTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCTVCSMRIKRTNSYWITGDGIRVWCQRC 919
            LT L+R+ P  +++HV ALR E +       +L   M   +NG  GVFN PVDP R G+PDY   +  PMDLGT++  L A+RY +  +FAAD+RL + NA+ +N   +QV+V A +    F+  +    A + ++  + A HSC  C G  VC LCGE CL+ +PP++ C  C  RI+R ++++   DG R WC +C
Sbjct:  121 LTPLARLDPPAIARHVHALRAEVFA-RRFRPLLARVMENPLNG--GVFNSPVDPVRLGIPDYPTIVRNPMDLGTIRQRLEALRYTSTDSFAADIRLVFANAIRYNPATHQVHVTATKMREDFDRTITRHEAKADQDAARKASHSCGFCHGS-VCGLCGEKCLKFDPPVLSCDCCGGRIRRGDTFYRASDGHR-WCVKC 313          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A5A8E306_CAFRO (Histone acetyltransferase n=8 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E306_CAFRO)

HSP 1 Score: 150 bits (378), Expect = 3.650e-36
Identity = 80/198 (40.40%), Postives = 118/198 (59.60%), Query Frame = 2
Query:  326 LTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCTVCSMRIKRTNSYWITGDGIRVWCQRC 919
            LT L+R+ P  +++HV ALR E +       +L   M   +NG  GVFN PVDP R G+PDY   +  PMDLGT++  L A+RY +  +FAAD+RL + NA+ +N   +QV+V A +    F+  +    A + ++  + A HSC  C G  VC LCGE CL+ +PP++ C  C  RI+R ++++   DG R WC +C
Sbjct:  578 LTPLARLDPPAIARHVHALRAEVFA-RRFRPLLARVMENPLNG--GVFNSPVDPVRLGIPDYPTIVRNPMDLGTIRQRLEALRYTSTDSFAADIRLVFANAIRYNPATHQVHVTATKMREDFDRTITRHEAKADQDAARKASHSCGFCHGS-VCGLCGEKCLKFDPPVLSCDCCGGRIRRGDTFYRASDGHR-WCVKC 770          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A7S3HI12_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HI12_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.240e-33
Identity = 77/211 (36.49%), Postives = 121/211 (57.35%), Query Frame = 2
Query:  311 DASRQLTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCTVCSMRIKRTNSYWITGDGIRVWCQRCHIASPAEI 943
            D      +L+ ++  ++ +++ A+R E YV+     VL+  M    + NR VFN PVDPE  G+P+Y   I +PMDLGTV S L   +Y T +A  AD+ L +QNA+ FN   ++V+  A+         + +      +E  K + HSC +C+G   C+LCGE CL+ EPP ++C  C  R+K+  ++++  DG  +WCQ+C+IA P  I
Sbjct:   96 DTRNSSNILNTMSFNKILRNICAVRSE-YVMKICKPVLQKLMAH--DRNRAVFNHPVDPEELGIPNYRIVIKQPMDLGTVMSNLRGGQYYTAKACFADMELVFQNAMLFNPLPHEVHKMAKDLNAVLHDEIAQAEEKCLKENEKKSNHSCTLCSGS-TCQLCGEKCLKFEPPSLNCQQCGTRVKKNANFFVCADGSALWCQKCYIALPPVI 302          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A7S3YAC7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAC7_HETAK)

HSP 1 Score: 134 bits (338), Expect = 2.270e-33
Identity = 74/157 (47.13%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  455 NRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCTV-CSMRIKRTNSYWITGDGIRVWCQRCH 922
            NRGVFN PVDP   G+P Y   + RP+DLGTVK+ LL   Y    AFAADVRL + NAL+FN   + V   A      FEA L        R+  +A +H+C  CAG+  C LCG+ CLRLEPP++ CT  C  R+KR   Y+++ +G+ VWCQ+C+
Sbjct:   42 NRGVFNRPVDPVALGLPTYREVVRRPLDLGTVKTRLLRFEYPGVAAFAADVRLVFANALAFNPAGHPVAKAARALGGEFEAELARAADKVRRDHARAGRHACGRCAGRS-CGLCGDKCLRLEPPLVTCTGRCRGRVKRGALYYVSSEGL-VWCQKCY 196          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A7S1U9I3_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9I3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.160e-31
Identity = 78/208 (37.50%), Postives = 116/208 (55.77%), Query Frame = 2
Query:  326 LTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCT-VCSMRIKRTNSYWITGDGIRVWCQRCHIASPAEIP 946
            ++ L ++    L  H+  LR E  +  S+ A+L   M      NRG FN PVD     +PDY   I +PMDLGT+K  L ++ Y+   +FAADVRLT+ NA+ +N   N V+  A+  L  FE    ++ +   +E  +  +H C  C G   C +CG+ CL+ EP ++ C   CS RIK+  +Y++  DG R+WCQRC+ + P  IP
Sbjct:  225 ISPLEQLDRLALEAHIVGLRREG-MQRSLKAILSKIMLH--TANRGTFNAPVDSVALRLPDYTRIITKPMDLGTIKLRLQSLAYRDMDSFAADVRLTFGNAMRYNPAKNNVHEAAKTLLGEFEHEFAKLLSKLDKEDGRREKHECEHCHGH-TCVVCGDKCLKFEPAVLICQGPCSQRIKKAQTYYMAPDGARLWCQRCYGSLPTVIP 428          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: T0R8A1_SAPDV (Histone acetyltransferase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8A1_SAPDV)

HSP 1 Score: 124 bits (310), Expect = 2.620e-27
Identity = 82/207 (39.61%), Postives = 114/207 (55.07%), Query Frame = 2
Query:  329 TVLSRVTPA------QLSQHVQALRLEAYVVHSMAAV-LKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAFEA--ALEEVRAASHRERTKAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCTV-CSMRIKRTNSYWITGDGIRVWCQRC 919
            T L+RV P       Q++ HV+ LR ++ +      V L   + +     +G+FN PVDP    +P Y   I RPMDLGT+K TL A +Y +  AFAADVRL ++NA+ FN K + V+  A+     F+     E V+A +  E  KAA H+C VCAG   C LC +GCL L  P   C   C    ++  SY++T DG R+WC +C
Sbjct:  349 TPLTRVQPLANLSRDQIALHVETLRCDSRLTRFRRLVPLLTRLMEHARNTKGLFNAPVDPVALDLPTYNDIIARPMDLGTIKKTLDAGKYVSLDAFAADVRLVFENAMLFNGKDHWVHGNAKLLRQCFDDLWVAELVKAGADGE--KAAAHACSVCAGH-TCALCDDGCLELTLPHYQCFGNCGTVFRKGMSYYVTRDGTRMWCMKC 552          
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Match: A0A7S3P7Q9_9STRA (Histone acetyltransferase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7Q9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.630e-27
Identity = 83/263 (31.56%), Postives = 123/263 (46.77%), Query Frame = 2
Query:  350 PAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVFNVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTYQNALSFNDKANQVYVWAEQGLVAF---------------------------------------------------------EAALEEVRAASHRERT---KAAQHSCVVCAGKGVCRLCGEGCLRLEPPIIHCT---VCSMRIKRTNSYWITGDGIRVWCQRCHIASPAEIPN 949
            P    QHV ALRLE  + H    +L   M+      +G+FNVPVDP    +PDY+  I RPMDLG++K+ L A+ Y +++    D+RL + NA+++N  +N V++ AE GL+AF                                                         E+ L+     S R++    K   HSC  C G+  C +C +GCL+LEP ++ C        RI++  SY+I  DG R +C+RCHI  P+ +PN
Sbjct:   88 PLMYCQHVSALRLEVEL-HPYRLILSRLMSHTTLNKKGIFNVPVDPIAQNLPDYYSVIKRPMDLGSIKTKLYAVEYSSQEDLVEDIRLVFFNAMTYNPPSNAVHMAAE-GLLAFFEDQLSAFVPDLQENSARTSFTPADIPKLHHAQDSSGAPTLDAAYTPNLPTRKAISAESLLKVTSPDSKRKKRGTKKNDAHSCQWCEGRK-CSICEQGCLQLEPTLLICNGPQCAGSRIRKGASYFIAPDGSRQYCERCHIGLPSVLPN 347          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4V8_9PHAE2.550e-5643.92Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
D7FK57_ECTSI4.310e-5643.92Zinc finger, TAZ-type n=1 Tax=Ectocarpus siliculos... [more]
A0A835ZGH1_9STRA9.510e-4141.86Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A812UDS9_9DINO1.470e-3640.40GTE12 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A5A8E306_CAFRO3.650e-3640.40Histone acetyltransferase n=8 Tax=Cafeteria roenbe... [more]
A0A7S3HI12_9STRA2.240e-3336.49Histone acetyltransferase (Fragment) n=1 Tax=Spume... [more]
A0A7S3YAC7_HETAK2.270e-3347.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1U9I3_9STRA1.160e-3137.50Histone acetyltransferase (Fragment) n=1 Tax=Phaeo... [more]
T0R8A1_SAPDV2.620e-2739.61Histone acetyltransferase n=1 Tax=Saprolegnia dicl... [more]
A0A7S3P7Q9_9STRA2.630e-2731.56Histone acetyltransferase n=1 Tax=Amphora coffeifo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1559339..1562292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue2.3e-52
Seed eggNOG ortholog2880.D7FK57
KEGG koko:K04498,ko:K11684,ko:K22261
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0030674,GO:0043621,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0060090,GO:0061919
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCBP-type histone acetylase, bromodomain and PHD zinc finger protein
Ec32 orthologEc-04_005740.1
Exons3
Model size1079
Cds size1059
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19454.1prot_S-ischiensis_contig8.19454.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1559358..1562292 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817282.633136-UTR-S-ischiensis_contig8:1559338..15593571622817282.633136-UTR-S-ischiensis_contig8:1559338..1559357Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1559339..1559357 +
1695740993.9217403-UTR-S-ischiensis_contig8:1559338..15593571695740993.9217403-UTR-S-ischiensis_contig8:1559338..1559357Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1559339..1559357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817282.6503465-CDS-S-ischiensis_contig8:1559357..15597141622817282.6503465-CDS-S-ischiensis_contig8:1559357..1559714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1559358..1559714 +
1695740993.9348109-CDS-S-ischiensis_contig8:1559357..15597141695740993.9348109-CDS-S-ischiensis_contig8:1559357..1559714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1559358..1559714 +
1622817282.6664023-CDS-S-ischiensis_contig8:1561051..15615481622817282.6664023-CDS-S-ischiensis_contig8:1561051..1561548Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1561052..1561548 +
1695740993.9450996-CDS-S-ischiensis_contig8:1561051..15615481695740993.9450996-CDS-S-ischiensis_contig8:1561051..1561548Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1561052..1561548 +
1622817282.6799808-CDS-S-ischiensis_contig8:1562087..15622921622817282.6799808-CDS-S-ischiensis_contig8:1562087..1562292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1562088..1562292 +
1695740993.9575298-CDS-S-ischiensis_contig8:1562087..15622921695740993.9575298-CDS-S-ischiensis_contig8:1562087..1562292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1562088..1562292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19454.1

>prot_S-ischiensis_contig8.19454.1 ID=prot_S-ischiensis_contig8.19454.1|Name=mRNA_S-ischiensis_contig8.19454.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=353bp
MRITFGGGLVAKAQVGSAGKPSAAKGKGKAGAKRPCPGAGAGGAAAGAGA
ATPMDEEAGETKLWAPCPWLSDLLKKPLDVKEVEEAGEDLAPFKGASDAS
RQLTVLSRVTPAQLSQHVQALRLEAYVVHSMAAVLKDAMTKGINGNRGVF
NVPVDPERDGVPDYFHRIPRPMDLGTVKSTLLAMRYKTEQAFAADVRLTY
QNALSFNDKANQVYVWAEQGLVAFEAALEEVRAASHRERTKAAQHSCVVC
AGKGVCRLCGEGCLRLEPPIIHCTVCSMRIKRTNSYWITGDGIRVWCQRC
HIASPAEIPNHVGLEGATADPASATAAHPANGPGGSASSDTSCGGPGAEP
KAR
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mRNA from alignment at S-ischiensis_contig8:1559339..1562292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19454.1 ID=mRNA_S-ischiensis_contig8.19454.1|Name=mRNA_S-ischiensis_contig8.19454.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2954bp|location=Sequence derived from alignment at S-ischiensis_contig8:1559339..1562292+ (Schizocladia ischiensis KU_0333)
GCGGAAGAACCGCCCTGTGATGCGAATCACGTTTGGGGGGGGGCTTGTCG CGAAAGCCCAGGTGGGGAGCGCGGGCAAGCCGTCAGCTGCCAAAGGGAAG GGGAAGGCTGGCGCCAAGCGCCCTTGCCCCGGCGCCGGCGCGGGAGGCGC GGCGGCGGGAGCGGGAGCGGCGACGCCAATGGACGAGGAGGCCGGCGAGA CCAAGCTCTGGGCGCCCTGCCCGTGGCTGAGCGATTTGCTGAAGAAGCCG CTGGATGTGAAGGAGGTGGAGGAGGCGGGGGAGGACCTGGCCCCCTTCAA GGGGGCTTCAGACGCGTCGAGGCAGCTGACGGTGCTGAGCCGGGTTACGC CCGCGCAGCTCTCGCAGCATGTCCAGGTGGGCTGCCTGTGGTGTCTTTTC TATTGACCCTGTTCCCTCAGCCGTATAGTTCTAGTACATCTCTATCGTTG TTGGTTTTGGGGAGGAGTTGGCACCGTAGCATTCTGGGACTCGGGTCCCA GGTGTACAGTACAGTGTTTGATGAAGTGTTGGTATCTGCGACAGTGTGGT GTACGGCGTCTTGGCGTTGTTGAGTGCCGTCGGCTCTGTCATCATCATTG TTGTTGTTGTGGTGGTGGTGGTGTGTGATGGTGTGGTGTAGTACCGCAGT CGTTGGAGAGACCTTGGGGGCCTTAGCGCTTTTGCCGCAACACCACTGTT TAAAAGGCATTTTCTTCATGAAATTTAAGCGGTTTTGCACGTCGTAGCGG TTTTCGCCCCGCCCCGATGTTTTACTTTCGTACATTTTGCCCCCCCCGGG CCTGGGCAACAAGTGCGATGATGAGGCCATTTTCGTGTCGACCGTGAAGG TTTTGTTCTTTAAGCTTGCCTCCCCTTTTGTACGTGAGCTCGAACGACCG TGGGGCAGGGTGCTTCGCGCCCGCTTGCCCCCCCGGATCCACCATTCCGC TTTGAAATACTCCCCTCCACGCGCCGATCCTCGCCGGGAGGGTTTTGCGT GTCGGAGGCGTTTTGCCCTCGGGCAGATGGTGTACCAAACTCGGGCCCCG ACCGGCCAATGCCTTTTGCATGTCGGAGCGGTTTTGCCTTCCGAAGTTTA TGTAGTAAACTTGGCCTAGCAGGGAAGGGGGCCCCGCACCCGGACTCTCA CAAGTCGCGGATGTGGGGGGGTATGGACTTGGCCACCCCTCCGCTTCTTG CGGGGGGGTGGCCACCCCCTCCCCCCCTGGCTCTGCCAGGGGAGGGAGGG GTCCTGCTCCGTCTCGACAGAGGCACGTGGTCGATGGTCTCGGGACTACG GCAAGCACCACGTGAATACATATAAACTCGACACCAGTTTTTGTACATTT TGCACGCAAGGTCTCTCCGACGATTATGGTAGTTGTTTTGCTGCTGCGGC TGTTGGTGGTGTGGTGGTGCTGGTGGTGTTCAACGGTTGCTGGTGCTGGT ACGCTTCTGTTGTTGCTGCTGGTGTTGTTGTCGTTGCTGTCATTGTTTTG TTGTTGTTGTTGTTTTGTTGTTGCTGCAGCTTCCGCCGCGCCGCCGCCGC CGCCGCGCCCGATGTCAAGCGACCCAACACCCCCACCAACAGGCAGACGT CTGACAGCACACCCATCCTCACTCACTTGCGTGAATGCCCGGGCGACCAA CTGACCAACCAACCTACAATCGGTCTTCCCCCACCCCTTCCCCGCGCGCT TCGCGTCTGGCAGGCGCTGCGCCTGGAGGCGTACGTGGTGCACAGCATGG CAGCTGTCCTCAAGGATGCCATGACCAAGGGCATCAACGGCAACCGGGGG GTGTTCAACGTCCCGGTGGACCCGGAGCGGGATGGCGTGCCCGACTACTT CCATCGCATCCCCCGCCCCATGGACCTGGGCACCGTCAAGTCAACGCTGC TCGCCATGCGGTACAAGACCGAGCAGGCGTTCGCGGCGGACGTGCGCCTC ACGTACCAGAACGCCCTCTCCTTCAATGACAAGGCCAACCAGGTGTACGT GTGGGCGGAGCAGGGGCTGGTGGCGTTTGAGGCCGCGCTGGAGGAGGTGC GGGCTGCGTCGCACAGGGAGCGGACCAAGGCGGCGCAGCACAGCTGCGTT GTCTGTGCGGGCAAGGGCGTGTGCCGGCTATGCGGGGAAGGGTGCCTCAG GCTGGAGCCGCCCATCATTCACTGCACGGTGTGCAGCATGCGCATCAAGC GCACCAACTCGTGAGTTCTGTTGCTCGCCCCCCCCCGCCGCGCGAGTGTA TTTGGAATTTGTGTGTGTGTGTGTGCATGCGTGTGTGCACGTGCGTGCGT GCGTGCGTGTGTGTGTGCGTGAGTGCGTGCGTGCGTGCATGTAAGTGTAT ACGTGTGTGTGTGTGCGTGCTTGTTGTGTGCGTGTGTGTGTGCATTTGTG TGCCTGCATGTGTGTAAGTGTGTGCGTGTGTGTGTGCGTGTTTGTCATGT GGCATGTGTATACGTGCTTGCTCCATGGCACTTCCGTAAGTACTTAGTGT GTACGATATTTGTCTCATCGGCGGCCAGTGTGATGATATGTGCCTGCCTT GGCACCTGCTGTTCTGTACTGAGTACAGCAGTACACTCTGCGGCACTATG AGTCATTCCAGTAAGCGCTTCCGAGCAACACAAGTGCTCCTTCATGTCCA CCGCTGTGCTGCATCCAAGAGCAGCATTTGAACCAGCGCACGCTGCCATC CCCCGCCCTTCCCCCCCCCGGCCGCCTGGTCTTTCCTCGTCTCCCCCAGA TACTGGATCACCGGCGACGGGATCCGTGTGTGGTGCCAGCGGTGCCACAT CGCTTCTCCCGCAGAGATCCCGAACCACGTGGGCCTGGAAGGTGCCACGG CGGACCCGGCCTCGGCCACTGCCGCACACCCTGCCAATGGGCCTGGCGGC AGCGCCAGCAGCGACACCTCCTGCGGAGGCCCAGGGGCCGAGCCCAAGGC CCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1559339..1562292+

>mRNA_S-ischiensis_contig8.19454.1 ID=mRNA_S-ischiensis_contig8.19454.1|Name=mRNA_S-ischiensis_contig8.19454.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2118bp|location=Sequence derived from alignment at S-ischiensis_contig8:1559339..1562292+ (Schizocladia ischiensis KU_0333)
ATGCGAATCACGTTTGGGGGGGGGCTTGTCGCGAAAGCCCAGGTGGGGAG
CGCGGGCAAGCCGTCAGCTGCCAAAGGGAAGGGGAAGGCTGGCGCCAAGC
GCCCTTGCCCCGGCGCCGGCGCGGGAGGCGCGGCGGCGGGAGCGGGAGCG
GCGACGCCAATGGACGAGGAGGCCGGCGAGACCAAGCTCTGGGCGCCCTG
CCCGTGGCTGAGCGATTTGCTGAAGAAGCCGCTGGATGTGAAGGAGGTGG
AGGAGGCGGGGGAGGACCTGGCCCCCTTCAAGGGGGCTTCAGACGCGTCG
AGGCAGCTGACGGTGCTGAGCCGGGTTACGCCCGCGCAGCTCTCGCAGCA
TGTCCAGATGCGAATCACGTTTGGGGGGGGGCTTGTCGCGAAAGCCCAGG
TGGGGAGCGCGGGCAAGCCGTCAGCTGCCAAAGGGAAGGGGAAGGCTGGC
GCCAAGCGCCCTTGCCCCGGCGCCGGCGCGGGAGGCGCGGCGGCGGGAGC
GGGAGCGGCGACGCCAATGGACGAGGAGGCCGGCGAGACCAAGCTCTGGG
CGCCCTGCCCGTGGCTGAGCGATTTGCTGAAGAAGCCGCTGGATGTGAAG
GAGGTGGAGGAGGCGGGGGAGGACCTGGCCCCCTTCAAGGGGGCTTCAGA
CGCGTCGAGGCAGCTGACGGTGCTGAGCCGGGTTACGCCCGCGCAGCTCT
CGCAGCATGTCCAGGCGCTGCGCCTGGAGGCGTACGTGGTGCACAGCATG
GCAGCTGTCCTCAAGGATGCCATGACCAAGGGCATCAACGGCAACCGGGG
GGTGTTCAACGTCCCGGTGGACCCGGAGCGGGATGGCGTGCCCGACTACT
TCCATCGCATCCCCCGCCCCATGGACCTGGGCACCGTCAAGTCAACGCTG
CTCGCCATGCGGTACAAGACCGAGCAGGCGTTCGCGGCGGACGTGCGCCT
CACGTACCAGAACGCCCTCTCCTTCAATGACAAGGCCAACCAGGTGTACG
TGTGGGCGGAGCAGGGGCTGGTGGCGTTTGAGGCCGCGCTGGAGGAGGTG
CGGGCTGCGTCGCACAGGGAGCGGACCAAGGCGGCGCAGCACAGCTGCGT
TGTCTGTGCGGGCAAGGGCGTGTGCCGGCTATGCGGGGAAGGGTGCCTCA
GGCTGGAGCCGCCCATCATTCACTGCACGGTGTGCAGCATGCGCATCAAG
CGCACCAACTCGCGCTGCGCCTGGAGGCGTACGTGGTGCACAGCATGGCA
GCTGTCCTCAAGGATGCCATGACCAAGGGCATCAACGGCAACCGGGGGGT
GTTCAACGTCCCGGTGGACCCGGAGCGGGATGGCGTGCCCGACTACTTCC
ATCGCATCCCCCGCCCCATGGACCTGGGCACCGTCAAGTCAACGCTGCTC
GCCATGCGGTACAAGACCGAGCAGGCGTTCGCGGCGGACGTGCGCCTCAC
GTACCAGAACGCCCTCTCCTTCAATGACAAGGCCAACCAGGTGTACGTGT
GGGCGGAGCAGGGGCTGGTGGCGTTTGAGGCCGCGCTGGAGGAGGTGCGG
GCTGCGTCGCACAGGGAGCGGACCAAGGCGGCGCAGCACAGCTGCGTTGT
CTGTGCGGGCAAGGGCGTGTGCCGGCTATGCGGGGAAGGGTGCCTCAGGC
TGGAGCCGCCCATCATTCACTGCACGGTGTGCAGCATGCGCATCAAGCGC
ACCAACTCATACTGGATCACCGGCGACGGGATCCGTGTGTGGTGCCAGCG
GTGCCACATCGCTTCTCCCGCAGAGATCCCGAACCACGTGGGCCTGGAAG
GTGCCACGGCGGACCCGGCCTCGGCCACTGCCGCACACCCTGCCAATGGG
CCTGGCGGCAGCGCCAGCAGCGACACCTCCTGCGGAGGCCCAGGGGCCGA
GCCCAAGGCCCGGATACTGGATCACCGGCGACGGGATCCGTGTGTGGTGC
CAGCGGTGCCACATCGCTTCTCCCGCAGAGATCCCGAACCACGTGGGCCT
GGAAGGTGCCACGGCGGACCCGGCCTCGGCCACTGCCGCACACCCTGCCA
ATGGGCCTGGCGGCAGCGCCAGCAGCGACACCTCCTGCGGAGGCCCAGGG
GCCGAGCCCAAGGCCCGG
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