mRNA_S-ischiensis_contig1.100.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.100.1
Unique NamemRNA_S-ischiensis_contig1.100.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:688674..691212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.9368725-CDS-S-ischiensis_contig1:688673..6887761622815343.9368725-CDS-S-ischiensis_contig1:688673..688776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 688674..688776 -
1695739647.7966638-CDS-S-ischiensis_contig1:688673..6887761695739647.7966638-CDS-S-ischiensis_contig1:688673..688776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 688674..688776 -
1622815343.950421-CDS-S-ischiensis_contig1:691135..6912121622815343.950421-CDS-S-ischiensis_contig1:691135..691212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 691136..691212 -
1695739647.8092225-CDS-S-ischiensis_contig1:691135..6912121695739647.8092225-CDS-S-ischiensis_contig1:691135..691212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 691136..691212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.100.1prot_S-ischiensis_contig1.100.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 688674..691212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.100.1

>prot_S-ischiensis_contig1.100.1 ID=prot_S-ischiensis_contig1.100.1|Name=mRNA_S-ischiensis_contig1.100.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=60bp
EEEDRQDGVGEEQECGQWPRPLPRQRPPPCSPWQAVWALDRSASPRLWRA
RLRRPRPRRP
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mRNA from alignment at S-ischiensis_contig1:688674..691212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.100.1 ID=mRNA_S-ischiensis_contig1.100.1|Name=mRNA_S-ischiensis_contig1.100.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2539bp|location=Sequence derived from alignment at S-ischiensis_contig1:688674..691212- (Schizocladia ischiensis KU_0333)
GAGGAGGAGGATCGGCAGGACGGGGTGGGGGAGGAGCAGGAATGTGGGCA
GTGGCCACGACCACTGCCTCGTCAAAGGTGAGGACTGCGTTAGCCCTTTT
ACCCCTGCTGAATTGGACTTACGCACTACAACCCTGTGACTATACGGACC
CCAGGGGTAAAAGGGTTAAGCCAAGGGGTGTGCGACTGCAAGTACCTGCG
CCCCCGCCCCTCCACACACACACACACATACACGCCGCCTGGAGTGGGCG
TTCCTCCCAGCATGTGTGTGGAGCGCTGTAGCACGGTTGAGACGGAGCTG
CAGCCCCGCCTATAGTTAAGTTATAACTTCGGGTTCGCCCTCCTGCTGGA
GTAGGTACCTATTTTGCAGTCTACTCTCAGTGCAAATACAAGCATGTTCT
AGTACGTACGAGTACAGCACTAACAGGGACGGCATGGGGCGAGGTGCGGG
CCATGTGACTAAAGACCCCAAGGATGGCTGTTCCTTAGGTCACAAGGAAA
GGAGTGCGTGTGTGTGTGTATGTCCGTAGCATGTACTATGTAGTATACTG
CTACAGTAAATGCTCTGTACTTGGGAACTACTGTACGCCTCGAGATATCT
ACAGTACACAGTACATGGCCATGACGGTGACGGGCGACGGCACGGCATCT
GAACGGCCACATGGGCCGTGTTGAGGGTCAAGGGTTTCCGCACCGGTCAC
CGGTCGTTGCATCCTATGCGGAACAACGCCCGATTTTACGCTCGCCTGCA
GTGATTGGGTGGGTTGTATACGTACGTTGTTGGCGTGGCCAGTTGATCGG
TTGGTATTTTAAGGAACAACACGGGGCGAGGTGCGGGCCACGTCACTAGA
GACCTCAACAATGGCCCTTCCTTAGCTCGCCAGGGGAAAGTTGTGTGGGG
AACGGGAGGTGGAAGAGGGGGAGGGGTGGGGGGAAACGAGCGAGGGGAAT
GGTTGGTAGTTTGTATGCGTTGTTGGTCTCGCCAGTAGACTGACGTTAAC
GCTGCGGTGTTACTTCGTGTGGTCTCGACCGAGGCGCGTGGTCAATGGTC
TCGGGGCTATGGCCAAGCACAACATGAGTACATATGTATTACTGTAGCGG
GTGGGTTGTTTACGCGTACCGTCGTTTGCTGTGCTCAACTTGACTGTAGG
GGGTTGGCTGTGGTGTACAATAGGCCCTTGTATCACTGGTACAGGCGACT
ACTAGACTTCAAAGCACTACACCACTTCAGGTGTAACCCCACACCAAATA
TAGTTGGGGGTCAATCCCGGCGCTGAAGAGAAAACTGATAGGGACGCAGA
GCCCCCTCGTGGGAACGATGCTGATTTATCAAGAAGGAATCTCATTACCT
GAGCCGCGGCATTGGCCTGTTTTCTGCCTCGATGATGGATGCGTGCATCG
GGCACCTTGAATCCACTGCTTGTACGAGTTCTTGCATGCGCCTTCTTGCA
TGCGCCTTCCGAGTGTATAGGATGTACTTACAAGTATATATATACGAAGT
ATGTGGTCAATGGTCTCGGGAGTACGGCAAGCACAACGTGAGTACATACT
CGTATATGTACGTAGTACACTACGAGTACTATATGCAGTCATTGGGAATT
GGGGGAGTATGGACGTGGCCACCCCTCCGCCTCTGGCGGTGGGGTGGCCA
CCCCCTCCAACCCTGGCTCTGCCAGGGGAGGGAAGGGGCCTGCTCCGTCT
CGATCGAGTCGTGTGGTCAATGGTTTCGGTACTACGGCAAGCACAACGGG
AGTATATGTTTTTTAATAGGTAGTTGGCGTCGGCAATGCACGCAAGGTTA
TTTCGCAAGACAAGCCAATGAGTGCAGAGAGAGAGGGAGAGAGAGACAGA
GAGTTCGGTATACGTCAAAGCGCGGGGTCAATGGTCTCGGGACTACGGCA
AGCATAGCGCGAATACATGCTGTATATACTTCTGGAAGTACCTGGTACTT
CGAAGTATGTATATAGAGCATACTGTACTGTAGTTATGAGGCTTCACTTC
ACAATGCCCAAGCAATTAGTTCGAGGTACACAGTAGTAGAGTAGTCAGGA
GACTATAACGGGAAGTATGCGCGTCAACAGTCGCGCTGTACGTGCCGTCA
ACTAGCCCAGAGACCATTGGCCACGCACAACTTGCACGAGGCCTCTGGAA
CATGGCCACTCCCGACGCCGCTAGGTTACTCCCGGCACTGGGCAACCCTT
GAGAAACTTGCCGCCCCCCGGCCGGCCATGCACACGCACTTTGGCGCACA
CCGAACAACGGTGCGCAGTTCACGAGGTCATTTGCCTCCAAGTTCATGCA
GTACTCATACATGGTCAGGCCTTTCGCGTTCCCCCCCAAATGGCACGCGT
CCTTTGGTCCATGGTCGTGTGGCCAAGTAAGAACTGTAGCAAGCAGCTCA
TGAGTGCAGCCCCCCCCCCCCACCCCCCCCCCCCAGGCCTCCCCCGTGCT
CCCCATGGCAGGCGGTGTGGGCTTTGGATCGCTCAGCATCTCCAAGGTTG
TGGCGCGCACGCCTCCGTCGTCCGCGGCCGCGGCGGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:688674..691212-

>mRNA_S-ischiensis_contig1.100.1 ID=mRNA_S-ischiensis_contig1.100.1|Name=mRNA_S-ischiensis_contig1.100.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=360bp|location=Sequence derived from alignment at S-ischiensis_contig1:688674..691212- (Schizocladia ischiensis KU_0333)
GAGGAGGAGGATCGGCAGGACGGGGTGGGGGAGGAGCAGGAATGTGGGCA
GTGGCCACGACCACTGCCTCGTCAAAGGAGGAGGAGGATCGGCAGGACGG
GGTGGGGGAGGAGCAGGAATGTGGGCAGTGGCCACGACCACTGCCTCGTC
AAAGGCCTCCCCCGTGCTCCCCATGGCAGGCGGTGTGGGCTTTGGATCGC
TCAGCATCTCCAAGGTTGTGGCGCGCACGCCTCCGTCGTCCGCGGCCGCG
GCGGCCCGCCTCCCCCGTGCTCCCCATGGCAGGCGGTGTGGGCTTTGGAT
CGCTCAGCATCTCCAAGGTTGTGGCGCGCACGCCTCCGTCGTCCGCGGCC
GCGGCGGCCC
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