mRNA_S-ischiensis_contig8.19796.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19796.1
Unique NamemRNA_S-ischiensis_contig8.19796.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:4086817..4087333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19796.1prot_S-ischiensis_contig8.19796.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 4086817..4087260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.8021104-CDS-S-ischiensis_contig8:4086816..40869551622817264.8021104-CDS-S-ischiensis_contig8:4086816..4086955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4086817..4086955 -
1695740979.9871912-CDS-S-ischiensis_contig8:4086816..40869551695740979.9871912-CDS-S-ischiensis_contig8:4086816..4086955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4086817..4086955 -
1622817264.8131053-CDS-S-ischiensis_contig8:4087087..40872601622817264.8131053-CDS-S-ischiensis_contig8:4087087..4087260Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087088..4087260 -
1695740979.9967763-CDS-S-ischiensis_contig8:4087087..40872601695740979.9967763-CDS-S-ischiensis_contig8:4087087..4087260Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087088..4087260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.8241045-UTR-S-ischiensis_contig8:4087260..40873331622817264.8241045-UTR-S-ischiensis_contig8:4087260..4087333Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 4087261..4087333 -
1695740980.0066664-UTR-S-ischiensis_contig8:4087260..40873331695740980.0066664-UTR-S-ischiensis_contig8:4087260..4087333Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 4087261..4087333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19796.1

>prot_S-ischiensis_contig8.19796.1 ID=prot_S-ischiensis_contig8.19796.1|Name=mRNA_S-ischiensis_contig8.19796.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
MDVFTALTFMAFESFRDRVIRRFRGTQQADGPTAGAAAEPASAFSGFSFG
AQGGSGQGLSSSGPSESTLPNPAFSGFSFTPSSTLGGGNAVPGGAKPASG
AFRV
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mRNA from alignment at S-ischiensis_contig8:4086817..4087333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19796.1 ID=mRNA_S-ischiensis_contig8.19796.1|Name=mRNA_S-ischiensis_contig8.19796.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=517bp|location=Sequence derived from alignment at S-ischiensis_contig8:4086817..4087333- (Schizocladia ischiensis KU_0333)
CCGAAAGAGGCGGACAATCAGGGCCGCCCGGTGAGAGCATGCCCTTGGGC
GTTCGAGAGATAGGCGCAGGCTCATGGATGTGTTCACTGCTCTGACTTTC
ATGGCCTTTGAATCGTTCCGCGACCGGGTGATCAGGCGTTTCAGGGGTAC
TCAACAAGCTGATGGGCCAACGGCTGGGGCAGCGGCTGAACCCGCATCCG
CTTTCTCGGGCTTCTCGTTTGGAGCACAAGGCGGGTCAGGCCAAGGGTGA
GTGCTTCAGACTCGACGTTCCTGTTTCGGCTGACCGCAGAGACTTGCGCA
TGTATGTACACGTAGAAAAGTTGTTGCCGCCAGTCATCGGCCTTGCTCAC
ACACCCTCCAACATGTTTTTTTTTTCAGGTTGAGCTCGAGCGGCCCTTCG
GAGAGCACTTTGCCCAATCCAGCATTTTCTGGCTTCTCTTTCACCCCATC
ATCTACTCTGGGCGGGGGAAACGCTGTTCCGGGCGGAGCGAAGCCTGCCA
GCGGGGCATTCAGGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:4086817..4087333-

>mRNA_S-ischiensis_contig8.19796.1 ID=mRNA_S-ischiensis_contig8.19796.1|Name=mRNA_S-ischiensis_contig8.19796.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig8:4086817..4087333- (Schizocladia ischiensis KU_0333)
ATGGATGTGTTCACTGCTCTGACTTTCATGGCCTTTGAATCGTTCCGCGA
CCGGGTGATCAGGCGTTTCAGGGGTACTCAACAAGCTGATGGGCCAACGG
CTGGGGCAGCGGCTGAACCCGCATCCGCTTTCTCGGGCTTCTCGTTTGGA
GCACAAGGCGGGTCAGGCCAAGGATGGATGTGTTCACTGCTCTGACTTTC
ATGGCCTTTGAATCGTTCCGCGACCGGGTGATCAGGCGTTTCAGGGGTAC
TCAACAAGCTGATGGGCCAACGGCTGGGGCAGCGGCTGAACCCGCATCCG
CTTTCTCGGGCTTCTCGTTTGGAGCACAAGGCGGGTCAGGCCAAGGGTTG
AGCTCGAGCGGCCCTTCGGAGAGCACTTTGCCCAATCCAGCATTTTCTGG
CTTCTCTTTCACCCCATCATCTACTCTGGGCGGGGGAAACGCTGTTCCGG
GCGGAGCGAAGCCTGCCAGCGGGGCATTCAGGGTGGTTGAGCTCGAGCGG
CCCTTCGGAGAGCACTTTGCCCAATCCAGCATTTTCTGGCTTCTCTTTCA
CCCCATCATCTACTCTGGGCGGGGGAAACGCTGTTCCGGGCGGAGCGAAG
CCTGCCAGCGGGGCATTCAGGGTG
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