mRNA_S-ischiensis_contig8.19706.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19706.1
Unique NamemRNA_S-ischiensis_contig8.19706.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3270449..3271989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size783
Cds size765
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19706.1prot_S-ischiensis_contig8.19706.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3270467..3271989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.347526-UTR-S-ischiensis_contig8:3270448..32704661622817263.347526-UTR-S-ischiensis_contig8:3270448..3270466Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3270449..3270466 +
1695740979.1428227-UTR-S-ischiensis_contig8:3270448..32704661695740979.1428227-UTR-S-ischiensis_contig8:3270448..3270466Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3270449..3270466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.3591468-CDS-S-ischiensis_contig8:3270466..32711861622817263.3591468-CDS-S-ischiensis_contig8:3270466..3271186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3270467..3271186 +
1695740979.1530223-CDS-S-ischiensis_contig8:3270466..32711861695740979.1530223-CDS-S-ischiensis_contig8:3270466..3271186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3270467..3271186 +
1622817263.3699765-CDS-S-ischiensis_contig8:3271944..32719891622817263.3699765-CDS-S-ischiensis_contig8:3271944..3271989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3271945..3271989 +
1695740979.1711302-CDS-S-ischiensis_contig8:3271944..32719891695740979.1711302-CDS-S-ischiensis_contig8:3271944..3271989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3271945..3271989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19706.1

>prot_S-ischiensis_contig8.19706.1 ID=prot_S-ischiensis_contig8.19706.1|Name=mRNA_S-ischiensis_contig8.19706.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=255bp
MLPVQVQDDGGSGDRGTENFPGGTAAPPSGRAAPANTAPEERVSDATASA
PTGNNAPDRANVSSLARPSVRIREEGSSGNKSSLLKPGSSIQPRFKPRSG
GGSGGTNIIRPGSSFTGRAPAQAVAGGEGSARGFGTGTPVPRPVRGSVAS
LNGNGHSGRGSTLIRPGSSIGGRGGGGGGGGGNGTSLATNDSSRASVLGT
GRIGGGGQWTARPHPSSAQGGVVGGSDSRAGLSSPGRSLDGAGVVGGAAA
AKAKG
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mRNA from alignment at S-ischiensis_contig8:3270449..3271989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19706.1 ID=mRNA_S-ischiensis_contig8.19706.1|Name=mRNA_S-ischiensis_contig8.19706.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1541bp|location=Sequence derived from alignment at S-ischiensis_contig8:3270449..3271989+ (Schizocladia ischiensis KU_0333)
CGACAAGACCGACCCGCGATGCTACCAGTCCAGGTGCAAGACGATGGGGG
GAGTGGGGACCGTGGAACGGAGAATTTTCCCGGCGGAACCGCTGCGCCGC
CTTCCGGACGTGCCGCTCCCGCCAACACTGCGCCTGAGGAGCGGGTTTCC
GACGCGACGGCGAGCGCACCTACGGGCAACAATGCGCCCGACAGAGCTAA
CGTCTCGAGCCTCGCCCGGCCGAGTGTGAGAATCCGTGAGGAAGGAAGCT
CTGGCAACAAATCCAGCTTGCTGAAGCCAGGGTCTAGTATTCAACCTCGT
TTCAAGCCCCGCAGCGGCGGCGGCAGCGGTGGCACCAACATCATCCGGCC
CGGGTCCAGCTTCACGGGGCGAGCACCAGCGCAAGCGGTGGCGGGGGGCG
AAGGATCGGCGCGGGGTTTCGGGACAGGCACGCCCGTGCCCCGACCCGTC
CGAGGAAGCGTCGCCAGCCTCAATGGCAACGGGCATTCCGGCAGAGGCTC
CACCCTGATCCGCCCCGGGTCCAGCATCGGCGGGCGTGGGGGTGGCGGCG
GCGGCGGCGGTGGCAACGGTACGTCCCTTGCCACAAATGATTCGTCACGA
GCCAGTGTCTTGGGGACGGGCAGAATCGGCGGCGGTGGACAGTGGACAGC
CCGGCCCCATCCCTCCTCCGCCCAAGGCGGCGTCGTTGGCGGCAGTGACA
GCAGGGCGGGGCTGAGCTCACCGGGCCGTTCCCTTGATGTGGGTGTCTGT
CCTGCCCACTTCTCGTGGCGCATCTCGTGTGTGTATGGGGGGGAAGTAAG
GGTGAAGGCAAGCTTCAGCTTTCGCTGCAACAGGGGCCGTCAGCAATGCC
TATGTGACTGCACGCTTTGCTACTCAACCTCTCGGCGGATTCGGTGGGCT
ATGCTACTTAAGCGGACCGCGCTTGTCTTGGCCGTTTCCCCCGGGCAAAG
CGGTAGCCACGGTTTGATTGCTTGTGCGCGTACTTACTGCTGTAGCACAT
ATGTGGTCAGTTGAGGTCCTCGGCGACGTTGCCCGCACCTCGCCTCGTGC
TGTTCCTGTTGGTACGGCCAGCAATTTATCACGCAAGCACAGTGCATAAA
TAGTATGGTGCTTGAGTATGTAGTTGTGGCAGCAGTACATATTATTGTGC
TGTGAGTGCTTTAGTAGTACGTACGTACTAGTACCAGCAGTACTGTTGTA
CTATACTCGAGTACTTTGAAGCGTGCGCACTTGTGCTCGCAACCCGGAAA
AGCCCCCACCCGTAGTTTGTATGACCCCCACGTTTTAACCCCGTCTGGGT
GGTTTTTCATCCACCACCCGGCGTCTTTTTTTTAACCGCGCCCGCCCACC
CCCCCCAAATCGGCCGCAATCCCCCCAAAGGACCGCCATGCTCGGCTCAC
CCATTGTGCATGCTTGCGTGCCTGTGTGCTCGCCCGTGTCTGCGTGCCGT
GCGCCCACGCCACGGAACACATCCGTACTCGTGCTGCCCGCCGCAGGGAG
CCGGGGTTGTTGGAGGGGCGGCCGCGGCCAAGGCGAAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3270449..3271989+

>mRNA_S-ischiensis_contig8.19706.1 ID=mRNA_S-ischiensis_contig8.19706.1|Name=mRNA_S-ischiensis_contig8.19706.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1530bp|location=Sequence derived from alignment at S-ischiensis_contig8:3270449..3271989+ (Schizocladia ischiensis KU_0333)
ATGCTACCAGTCCAGGTGCAAGACGATGGGGGGAGTGGGGACCGTGGAAC
GGAGAATTTTCCCGGCGGAACCGCTGCGCCGCCTTCCGGACGTGCCGCTC
CCGCCAACACTGCGCCTGAGGAGCGGGTTTCCGACGCGACGGCGAGCGCA
CCTACGGGCAACAATGCGCCCGACAGAGCTAACGTCTCGAGCCTCGCCCG
GCCGAGTGTGAGAATCCGTGAGGAAGGAAGCTCTGGCAACAAATCCAGCT
TGCTGAAGCCAGGGTCTAGTATTCAACCTCGTTTCAAGCCCCGCAGCGGC
GGCGGCAGCGGTGGCACCAACATCATCCGGCCCGGGTCCAGCTTCACGGG
GCGAGCACCAGCGCAAGCGGTGGCGGGGGGCGAAGGATCGGCGCGGGGTT
TCGGGACAGGCACGCCCGTGCCCCGACCCGTCCGAGGAAGCGTCGCCAGC
CTCAATGGCAACGGGCATTCCGGCAGAGGCTCCACCCTGATCCGCCCCGG
GTCCAGCATCGGCGGGCGTGGGGGTGGCGGCGGCGGCGGCGGTGGCAACG
GTACGTCCCTTGCCACAAATGATTCGTCACGAGCCAGTGTCTTGGGGACG
GGCAGAATCGGCGGCGGTGGACAGTGGACAGCCCGGCCCCATCCCTCCTC
CGCCCAAGGCGGCGTCGTTGGCGGCAGTGACAGCAGGGCGGGGCTGAGCT
CACCGGGCCGTTCCCTTGATATGCTACCAGTCCAGGTGCAAGACGATGGG
GGGAGTGGGGACCGTGGAACGGAGAATTTTCCCGGCGGAACCGCTGCGCC
GCCTTCCGGACGTGCCGCTCCCGCCAACACTGCGCCTGAGGAGCGGGTTT
CCGACGCGACGGCGAGCGCACCTACGGGCAACAATGCGCCCGACAGAGCT
AACGTCTCGAGCCTCGCCCGGCCGAGTGTGAGAATCCGTGAGGAAGGAAG
CTCTGGCAACAAATCCAGCTTGCTGAAGCCAGGGTCTAGTATTCAACCTC
GTTTCAAGCCCCGCAGCGGCGGCGGCAGCGGTGGCACCAACATCATCCGG
CCCGGGTCCAGCTTCACGGGGCGAGCACCAGCGCAAGCGGTGGCGGGGGG
CGAAGGATCGGCGCGGGGTTTCGGGACAGGCACGCCCGTGCCCCGACCCG
TCCGAGGAAGCGTCGCCAGCCTCAATGGCAACGGGCATTCCGGCAGAGGC
TCCACCCTGATCCGCCCCGGGTCCAGCATCGGCGGGCGTGGGGGTGGCGG
CGGCGGCGGCGGTGGCAACGGTACGTCCCTTGCCACAAATGATTCGTCAC
GAGCCAGTGTCTTGGGGACGGGCAGAATCGGCGGCGGTGGACAGTGGACA
GCCCGGCCCCATCCCTCCTCCGCCCAAGGCGGCGTCGTTGGCGGCAGTGA
CAGCAGGGCGGGGCTGAGCTCACCGGGCCGTTCCCTTGATGGAGCCGGGG
TTGTTGGAGGGGCGGCCGCGGCCAAGGCGAAGGGGGGAGCCGGGGTTGTT
GGAGGGGCGGCCGCGGCCAAGGCGAAGGGG
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