mRNA_S-ischiensis_contig8.19662.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19662.1
Unique NamemRNA_S-ischiensis_contig8.19662.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2958715..2961185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size641
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19662.1prot_S-ischiensis_contig8.19662.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2958717..2961185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.4243727-CDS-S-ischiensis_contig8:2958716..29589191622817262.4243727-CDS-S-ischiensis_contig8:2958716..2958919Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2958717..2958919 -
1695740978.476542-CDS-S-ischiensis_contig8:2958716..29589191695740978.476542-CDS-S-ischiensis_contig8:2958716..2958919Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2958717..2958919 -
1622817262.4382367-CDS-S-ischiensis_contig8:2959474..29596291622817262.4382367-CDS-S-ischiensis_contig8:2959474..2959629Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2959475..2959629 -
1695740978.4859202-CDS-S-ischiensis_contig8:2959474..29596291695740978.4859202-CDS-S-ischiensis_contig8:2959474..2959629Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2959475..2959629 -
1622817262.4522007-CDS-S-ischiensis_contig8:2960020..29601291622817262.4522007-CDS-S-ischiensis_contig8:2960020..2960129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2960021..2960129 -
1695740978.4954839-CDS-S-ischiensis_contig8:2960020..29601291695740978.4954839-CDS-S-ischiensis_contig8:2960020..2960129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2960021..2960129 -
1622817262.4669783-CDS-S-ischiensis_contig8:2960624..29607361622817262.4669783-CDS-S-ischiensis_contig8:2960624..2960736Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2960625..2960736 -
1695740978.505309-CDS-S-ischiensis_contig8:2960624..29607361695740978.505309-CDS-S-ischiensis_contig8:2960624..2960736Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2960625..2960736 -
1622817262.479223-CDS-S-ischiensis_contig8:2961125..29611851622817262.479223-CDS-S-ischiensis_contig8:2961125..2961185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2961126..2961185 -
1695740978.5207033-CDS-S-ischiensis_contig8:2961125..29611851695740978.5207033-CDS-S-ischiensis_contig8:2961125..2961185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2961126..2961185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19662.1

>prot_S-ischiensis_contig8.19662.1 ID=prot_S-ischiensis_contig8.19662.1|Name=mRNA_S-ischiensis_contig8.19662.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=213bp
DYGYGVPLWSPYYREGGDRERATRRPNVVGNRLLPGFYRDSDRRELHRGL
DALYGESAEVKLGWDLHQTSEGQRLRDYGSGIPAWSPIYSGHLRTSTAAP
AAATPGTEAKPKKGEIARKVGGGSTDKLAQALVKPSRRARAPGMAGETGG
APLVAGADAGRARRAPRPQSAAPTRRRRHLGSSVPPGPRAALAMCRDIAA
ATAGPACKTSLRP
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mRNA from alignment at S-ischiensis_contig8:2958715..2961185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19662.1 ID=mRNA_S-ischiensis_contig8.19662.1|Name=mRNA_S-ischiensis_contig8.19662.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2471bp|location=Sequence derived from alignment at S-ischiensis_contig8:2958715..2961185- (Schizocladia ischiensis KU_0333)
GACTACGGCTACGGTGTCCCGCTGTGGTCACCATACTACCGGGAAGGGGG
CGACCGTGAGGTCAGGAAATCGTCAAAACACGCTCGCAGGAGCCCACAGC
GTGTGTGCCCCTTGTCACGGCGACGACGATGCTCTCATCATTGTAGGGCA
GAGTGGGCGGGGTACAGGCCCTGTCCATGCCGGTTGAGCCATACACAAAA
ATCGCCCGTTCCAACTCGGTGTGCTGCTGATACTCGAGTACTCCTCACTG
GCATGGTCACCCACTGCCCGCGGCGCAAGCGGAGACTCTCCACCAGCTCC
ACAGCAACGGGAACCCTTAGCACGACCGGGTCTCTCACAGCCCCCACAAG
TTTGTGCTTGCTGAGCTTGGTCGGCAACCGAAACGTCACTCGAGTATTTG
AGCTTTGGCAAGCTAACCCCAAGGGCCTCGGCTGCTTGTTCGCGTCCAGA
GAGCCACCCGAAGGCCCAACGTGGTTGGCAATCGATTGCTGCCTGGATTC
TACCGTGACAGCGACCGCCGAGAGCTTCACAGAGGTCTGGACGCTTTGTA
CGGTGAAAGCGGTGAGTGAATGACGGGAGAGGGGGGGGTGGGGGAGAGAC
ACGGGAAGAGAGAGAGCCTCCTGAGTTTGCATGTCCACTCAGTACTGTCT
ACTCAGTACTCAGGAGCAGTGCCGCAAGCCGCATGTGCACGAGTAGGTGC
TCCAAAGTGCTTGAACAAAAAGCAAGTGAGCACAGAAAAGCCACAACTAG
CACGATGCAGATGACAGAAACGTACGACTGTCGCAGGGACACCGACCAAA
TGCCAAGGGTACAAGTACTGCAACAGCAAGCTACTAACCTTGCAAGTGGC
ACAACATCACACCAACAAAAAAAGATGGCGATGGCAACCACAAGAGCGCC
AACAGCGACGATGACAGCGACACGAGCCAGGAACAGCGACAGCCGTCGCC
GCCGCTGCCACGGCCACCAGTCCAAAACCTCTTCGAGCTGCTCTTTGCCA
GATTCCCCCATCCTGATCTGACATGCCCTGTGCTCGTTCTTGCCCGTGCA
ATCCAGCCGAGGTAAAGCTGGGTTGGGATTTGCACCAGACCTCTGAGGGT
CAGCGGCTGCGTGACTATGGCTCGGGGATTCCCGCATGGTCTCCCATCTA
CTCCGGGCACCTACGGTGAGTGTGGGGTGCCGACACCCCCGCACCGCGGA
CGTCTCGGGGACGTGCTCCTCTGAGACCAGCGGCAGCGTGGGCGGCGCAG
ACCGTGTGTCAAGGACATCAAGCGTTTCGGCAGCGCAGTCCTTTGAAGCG
CTCGGAAGTTGCAAGAATGAAGTAGAGAAGAACGGTCTCAGCGCATTCTA
CAACAGGTGCATTTACAGTAGAAGGCTTTCAAAGTACTTCGACGTAGGTA
AGTGCTGTACTTCGTGCACCTAGTCGGACAGACGACTGCAAGTGGCCTAA
ACATGCCCAAACACGACTTAAATGCCTGCGCTCCCCCCCCCCCCCCCCCC
CCGGTCCCAAACCACCCCATCCACTTGATCCCCTGTGCCTCCTGCCCCGG
CGTCAGCACCTCGACGGCGGCCCCCGCCGCCGCCACACCCGGCACTGAAG
CCAAGCCAAAAAAGGGGGAGATTGCCAGAAAGGTCGGGGGCGGTAGCACG
GACAAGCTTGCTCAGGCACTGGTGAAACCGTCCAGGAGGGCCCGGGCCCC
GGGGATGGCAGGCGAGAAGGACTCTGTGATGTGATGTGATGTGATGTGTT
GTGATGTGATGCGTCCCCTGATGTCATGCAGTTTGACATCACATCACATG
TCAATTAGCAGGACACACGACAACACAGGGCGAGGTGCAGGCCACGTCAC
TGAGGACGTCAACAGTGGCCCTTCCTTAGCTCACCAGGGAAGGATCGTGT
GGGGAAGGTGTCATCACAGTAGTGCTTCGAAGAAGCACACGCTTTGGCGT
ACCAGAGCTACCCTCTGCATGTAGTGGGCACTACTGTACGTAGTAGCTAG
ACATCACTGCTTAGGCCAAGTGGGCTCAATCAATATCCCAGAGATGTCCT
TCGAAGTCTACAAGTACTTCGAAGTACCAGGTACATATAGCCATCCCACG
TCCCTTGCTTCTCTGCTCCGTGAGTGAGCGGAAGGGCTTCTGGTCAGGCC
GTCCCACTTGCGACGGGGCCCCGACCTCCCTCCCAACTCAAACAACAGCT
CCCCTCTCCTGTGTCTCCTCTCTCACCATCTGGTGTCCAACGGGCCACTT
TGCTCGCCTCCCACAGGCGAGACAGGCGGCGCCCCCCTGGTGGCAGGGGC
AGATGCGGGCCGGGCCCGCCGAGCCCCGCGACCGCAGAGCGCGGCCCCTA
CGCGGCGGCGGCGGCACCTGGGGTCCTCCGTTCCGCCGGGGCCCCGGGCT
GCTTTGGCCATGTGTCGCGACATTGCGGCGGCCACCGCAGGCCCTGCCTG
CAAAACGAGCCTCCGACCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2958715..2961185-

>mRNA_S-ischiensis_contig8.19662.1 ID=mRNA_S-ischiensis_contig8.19662.1|Name=mRNA_S-ischiensis_contig8.19662.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1278bp|location=Sequence derived from alignment at S-ischiensis_contig8:2958715..2961185- (Schizocladia ischiensis KU_0333)
GACTACGGCTACGGTGTCCCGCTGTGGTCACCATACTACCGGGAAGGGGG
CGACCGTGAGGACTACGGCTACGGTGTCCCGCTGTGGTCACCATACTACC
GGGAAGGGGGCGACCGTGAGAGAGCCACCCGAAGGCCCAACGTGGTTGGC
AATCGATTGCTGCCTGGATTCTACCGTGACAGCGACCGCCGAGAGCTTCA
CAGAGGTCTGGACGCTTTGTACGGTGAAAGCGAGAGCCACCCGAAGGCCC
AACGTGGTTGGCAATCGATTGCTGCCTGGATTCTACCGTGACAGCGACCG
CCGAGAGCTTCACAGAGGTCTGGACGCTTTGTACGGTGAAAGCGCCGAGG
TAAAGCTGGGTTGGGATTTGCACCAGACCTCTGAGGGTCAGCGGCTGCGT
GACTATGGCTCGGGGATTCCCGCATGGTCTCCCATCTACTCCGGGCACCT
ACGCCGAGGTAAAGCTGGGTTGGGATTTGCACCAGACCTCTGAGGGTCAG
CGGCTGCGTGACTATGGCTCGGGGATTCCCGCATGGTCTCCCATCTACTC
CGGGCACCTACGCACCTCGACGGCGGCCCCCGCCGCCGCCACACCCGGCA
CTGAAGCCAAGCCAAAAAAGGGGGAGATTGCCAGAAAGGTCGGGGGCGGT
AGCACGGACAAGCTTGCTCAGGCACTGGTGAAACCGTCCAGGAGGGCCCG
GGCCCCGGGGATGGCAGCACCTCGACGGCGGCCCCCGCCGCCGCCACACC
CGGCACTGAAGCCAAGCCAAAAAAGGGGGAGATTGCCAGAAAGGTCGGGG
GCGGTAGCACGGACAAGCTTGCTCAGGCACTGGTGAAACCGTCCAGGAGG
GCCCGGGCCCCGGGGATGGCAGGCGAGACAGGCGGCGCCCCCCTGGTGGC
AGGGGCAGATGCGGGCCGGGCCCGCCGAGCCCCGCGACCGCAGAGCGCGG
CCCCTACGCGGCGGCGGCGGCACCTGGGGTCCTCCGTTCCGCCGGGGCCC
CGGGCTGCTTTGGCCATGTGTCGCGACATTGCGGCGGCCACCGCAGGCCC
TGCCTGCAAAACGAGCCTCCGACCCGCGAGACAGGCGGCGCCCCCCTGGT
GGCAGGGGCAGATGCGGGCCGGGCCCGCCGAGCCCCGCGACCGCAGAGCG
CGGCCCCTACGCGGCGGCGGCGGCACCTGGGGTCCTCCGTTCCGCCGGGG
CCCCGGGCTGCTTTGGCCATGTGTCGCGACATTGCGGCGGCCACCGCAGG
CCCTGCCTGCAAAACGAGCCTCCGACCC
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