|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 570 |
| Cds size | 381 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817260.9890919-CDS-S-ischiensis_contig8:2412940..2412988 | 1622817260.9890919-CDS-S-ischiensis_contig8:2412940..2412988 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2412941..2412988 - |
| 1695740977.4737866-CDS-S-ischiensis_contig8:2412940..2412988 | 1695740977.4737866-CDS-S-ischiensis_contig8:2412940..2412988 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2412941..2412988 - |
| 1622817261.0029385-CDS-S-ischiensis_contig8:2413842..2414175 | 1622817261.0029385-CDS-S-ischiensis_contig8:2413842..2414175 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2413843..2414175 - |
| 1695740977.4837875-CDS-S-ischiensis_contig8:2413842..2414175 | 1695740977.4837875-CDS-S-ischiensis_contig8:2413842..2414175 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2413843..2414175 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817261.0139954-UTR-S-ischiensis_contig8:2414175..2414363 | 1622817261.0139954-UTR-S-ischiensis_contig8:2414175..2414363 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2414176..2414363 - |
| 1695740977.4939477-UTR-S-ischiensis_contig8:2414175..2414363 | 1695740977.4939477-UTR-S-ischiensis_contig8:2414175..2414363 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2414176..2414363 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19599.1 >prot_S-ischiensis_contig8.19599.1 ID=prot_S-ischiensis_contig8.19599.1|Name=mRNA_S-ischiensis_contig8.19599.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
MEGSPGVIGGPLPASNPRPRRRRLWSTGRSVNAPSSPDDEPESSWGPGMA
SDGYATAPELHRHKTVKPKRTRSRRRKGGSNLSEAGSGRVSGAKAPGGSR
RRRLKAMLRRKTVAAYKTAHSSFHSAW back to topmRNA from alignment at S-ischiensis_contig8:2412941..2414363- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19599.1 ID=mRNA_S-ischiensis_contig8.19599.1|Name=mRNA_S-ischiensis_contig8.19599.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1423bp|location=Sequence derived from alignment at S-ischiensis_contig8:2412941..2414363- (Schizocladia ischiensis KU_0333)
GGTCGCGCCGCAAACCTGGGATTCGCGACTGCCCCGCAGGCGTTGCCTGA
AAACTGGTGGGGAGGGGCGCGCCCCACCATCCTGTCCCAGGCCTACCTAC
CCAGTTGTAGGTTGCAAGAACCCCGCGCAACAGTGGGCAGAATGGGAAGG
ATTTAATTCGGGTGCGATCTCAGGCAGGGCACATTGAGATGGAGGGTTCG
CCTGGCGTGATTGGGGGACCCCTTCCCGCTTCAAATCCCAGGCCAAGACG
GCGCCGGCTGTGGAGCACGGGGAGGAGCGTAAATGCCCCGTCCTCCCCTG
ATGACGAGCCCGAGAGTTCCTGGGGACCTGGCATGGCTAGTGACGGTTAT
GCCACGGCGCCCGAGCTTCACAGACACAAGACCGTGAAGCCCAAGCGTAC
AAGGAGTCGCAGACGCAAGGGGGGTTCAAACCTTTCTGAGGCTGGCAGTG
GGCGTGTTTCCGGCGCTAAGGCTCCTGGGGGGTCGCGCCGTCGGAGGTTG
AAGGCGATGCTTCGGCGGAAGGTATGTCTGTAAGGGCTCACTGGATGTTC
AGCCGCGACTGTGCTAGCTAGAGCTAGCCCAAATTGTAGAGTTGTGAATT
GCTGCCAACTTGTACCTTTCTCTCGACGACCCGGGTATTCCATGTTCTTA
TAAGTGGGCACGGAGGTGTTTTCGGGAAGGGTTACAGTCGAGGTCGACGT
GAATGGCAAATATCAGAGGCCGAATGTGCACGAATTTGAAATACACATAC
GGTCCAAACCCAGCCGCAAGCTAAGCCCGGCTTCCCTTTGTACATATATG
CCAAGTGGCGAGCTGGGGATCGGTGTGCAACCCATCGCCTGGCCGGTGAG
AACGCGGTGTGCTCCATCCCGGCGTAATTTTAGGGACGCGTGGCCAACGG
CAGAAGGCTACCCCGGGGGCTGGCCGGCGGTCCAGCAAGTACCTAGTACA
CTGGGCCGACGGTCGGTGGCATGCACAGGATGGGGTGTCCCCTGTCCAAC
GTGAGTAAACACATGTAAGCACGCCCCCCTCAGACTGTGCTACACCCCCA
GCCCCCGCAACACACGCCTCGCCCACAAGTATTGGTGCGTGGCGCAAACA
GGGGGCCACCTCTCTGACCACATCCACCGTGCCCGCCGAGCTGGCCAGGT
CGTTCTACACCCCTGGTCGCAGCAGAGTCGTGGCGCTATCATCCATCCTC
CGGCGTGTGCCGCCGCCCTGACTCCCAGGGGGCACGGTCCTCTCGTCCCT
AACCGTAACCCTAGCCCTAACCTAACCCTAACCCTAACCCTAGCCTAGCC
CTAACCCTAACACTAACCCTTTTCTGCCCCCCACCGGCCCACCTCCCTGC
CCGCCCATCTGCCTTCGCTTGGCAGACCGTGGCGGCGTATAAAACGGCAC
ACAGCAGTTTCCACTCCGCCTGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:2412941..2414363- >mRNA_S-ischiensis_contig8.19599.1 ID=mRNA_S-ischiensis_contig8.19599.1|Name=mRNA_S-ischiensis_contig8.19599.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig8:2412941..2414363- (Schizocladia ischiensis KU_0333)
ATGGAGGGTTCGCCTGGCGTGATTGGGGGACCCCTTCCCGCTTCAAATCC
CAGGCCAAGACGGCGCCGGCTGTGGAGCACGGGGAGGAGCGTAAATGCCC
CGTCCTCCCCTGATGACGAGCCCGAGAGTTCCTGGGGACCTGGCATGGCT
AGTGACGGTTATGCCACGGCGCCCGAGCTTCACAGACACAAGACCGTGAA
GCCCAAGCGTACAAGGAGTCGCAGACGCAAGGGGGGTTCAAACCTTTCTG
AGGCTGGCAGTGGGCGTGTTTCCGGCGCTAAGGCTCCTGGGGGGTCGCGC
CGTCGGAGGTTGAAGGCGATGCTTCGGCGGAAGATGGAGGGTTCGCCTGG
CGTGATTGGGGGACCCCTTCCCGCTTCAAATCCCAGGCCAAGACGGCGCC
GGCTGTGGAGCACGGGGAGGAGCGTAAATGCCCCGTCCTCCCCTGATGAC
GAGCCCGAGAGTTCCTGGGGACCTGGCATGGCTAGTGACGGTTATGCCAC
GGCGCCCGAGCTTCACAGACACAAGACCGTGAAGCCCAAGCGTACAAGGA
GTCGCAGACGCAAGGGGGGTTCAAACCTTTCTGAGGCTGGCAGTGGGCGT
GTTTCCGGCGCTAAGGCTCCTGGGGGGTCGCGCCGTCGGAGGTTGAAGGC
GATGCTTCGGCGGAAGACCGTGGCGGCGTATAAAACGGCACACAGCAGTT
TCCACTCCGCCTGGACCGTGGCGGCGTATAAAACGGCACACAGCAGTTTC
CACTCCGCCTGG back to top
|